1OQVA

Structure of tcpa, the type iv pilin subunit from the toxin co-regulated pilus of vibrio cholerae classical biotype
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
171
structure length
171
Chain Sequence
DSQNMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFGNS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords toxin-coregulated pilus subunit
publication title Type IV Pilin Structure and Assembly: X-Ray and EM Analyses of Vibrio cholerae Toxin-Coregulated Pilus and Pseudomonas aeruginosa PAK Pilin
pubmed doi rcsb
source organism Vibrio cholerae
total genus 57
structure length 171
sequence length 171
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2003-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05946 TcpA Toxin-coregulated pilus subunit TcpA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1690.10 Alpha Beta 2-Layer Sandwich TcpA-like pilin TcpA-like pilin 1oqvA00
1Q5FA 3HRVA 3FHVA 3S0TA 3VORA 3FHUA 1ZWTA 1OQVA
chains in the Genus database with same CATH superfamily
4IXJA 1Q5FA 3HRVA 3FHVA 3S0TA 3VORA 3FHUA 1ZWTA 1OQVA
chains in the Genus database with same CATH topology
4IXJA 1Q5FA 3HRVA 3FHVA 3S0TA 3VORA 3FHUA 1ZWTA 1OQVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q5F A;  3HRV A;  3FHV A;  3S0T A;  3VOR A;  3FHU A;  1ZWT A;  1OQV A; 
#chains in the Genus database with same CATH topology
 4IXJ A;  1Q5F A;  3HRV A;  3FHV A;  3S0T A;  3VOR A;  3FHU A;  1ZWT A;  1OQV A; 
#chains in the Genus database with same CATH homology
 4IXJ A;  1Q5F A;  3HRV A;  3FHV A;  3S0T A;  3VOR A;  3FHU A;  1ZWT A;  1OQV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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