1ORNA

Structure of a trapped endonuclease iii-dna covalent intermediate: estranged-guanine complex
Total Genus 79
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
214
structure length
214
Chain Sequence
MLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure of a Trapped Endonuclease III-DNA Covalent Intermediate
pubmed doi rcsb
source organism Geobacillus stearothermophilus
molecule tags Hydrolase/dna
molecule keywords 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3'
total genus 79
structure length 214
sequence length 214
ec nomenclature
pdb deposition date 2003-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1ornA01
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1ornA02
4UNFA 3CWUA 4OFHA 1WEFA 1KQJA 4B23A 4EA5A 2H56A 1M3QA 2JHJA 3KNTA 1KO9A 1P59A 2ABKA 4E9HA 4OFAA 1RRSA 1LWYA 1PU8A 4E9FA 1LWVA 1YQMA 1KG5A 4EVVA 5AN4A 1KG6A 3I0XA 3OGDA 1KG7A 3FSPA 1EBMA 2OFKA 2I5WA 1MUNA 3OH6A 1NKUA 3N5NX 4AI4A 4AI5A 4OFEA 2NOEA 1XG7A 1KG4A 1KG2A 4E9GA 5KN9A 4YOQA 3FHFA 3KTUA 3F0ZA 1ORNA 1MUYA 4DK9A 1N39A 1LMZA 1XQOA 3S6IA 1NGNA 1HU0A 3CWTA 1YQKA 3I0WA 3D4VA 3FHGA 4B22A 3G0QA 1YQRA 4EW4A 3F10A 1KG3A 1MPGA 3CWAA 1KEAA 2JHNA 1DIZA 4EW0A 3CVTA 2JG6A 2NOZA 4UOBA 3OH9A 1M3HA 1ORPA 1XQPA 1N3CA 2NOHA 1PU6A 3IH7A 4B24A 4EA4A 1MUDA 3CW7A 1PVSA 4YPHA 2NOFA 4EJZA 1YQLA 3IHOA 3N0UA 4YPRA 2YG9A 2NOLA 1LWWA 2XHIA 5DPKA 1N3AA 4HSBA 1RRQA 1WEGA 3CVSA 1VRLA 4AIAA 4B21A 2NOBA 1PU7A 2OFIA 3CWSA 1P7MA 5CHZA 1WEIA 5KN8A 2YG8A 4E9EA 4EJYA 1FN7A 2NOIA 4PIIA
chains in the Genus database with same CATH superfamily
4UNFA 3CWUA 4OFHA 1WEFA 4BE0A 1KQJA 4B23A 2W03A 2V75A 4EA5A 2H56A 1M3QA 3OYLA 2JHJA 3KNTA 1KO9A 3L2VA 1P59A 2ABKA 4E9HA 3L2RA 4OFAA 4BDYA 1RRSA 1LWYA 1PU8A 4E9FA 1LWVA 1YQMA 4ZTJA 1KG5A 4EVVA 5AN4A 2W04A 1KG6A 3NNQA 3I0XA 3OGDA 1KG7A 3FSPA 4E7KA 1EBMA 3OYMA 2OFKA 2I5WA 1MUNA 3L2UA 4BDZA 3OYCA 3OYIA 3S3MA 3OH6A 3OS2A 1NKUA 3N5NX 4AI4A 4AI5A 3OYHA 3S3OA 4OFEA 3OYJA 2NOEA 1XG7A 3L2QA 1KG4A 1KG2A 5KN9A 4E9GA 4YOQA 3FHFA 3KTUA 5FRMA 3F0ZA 1ORNA 1MUYA 4BE2A 3R2XC 4DK9A 1N39A 1LMZA 4BE1A 5FROA 3LCNA 1XQOA 4E7IA 3S6IA 1NGNA 1HU0A 3CWTA 1YQKA 3I0WA 3D4VA 3FHGA 4B22A 4BACA 3G0QA 4NZGA 1YQRA 4EW4A 3F10A 1KG3A 1MPGA 3CWAA 3OYFA 1KEAA 2JHNA 1DIZA 2JPSA 4EW0A 3CVTA 2JG6A 4E7JA 4UOBA 2NOZA 3OH9A 1M3HA 1ORPA 3OYDA 1XQPA 1N3CA 2NOHA 1PU6A 3IH7A 4B24A 4EA4A 4E7LA 1MUDA 3CW7A 1PVSA 4YPHA 2NOFA 4ZTFA 3L2WA 4EJZA 3OS1A 1YQLA 3IHOA 3N0UA 4YPRA 3OYGA 2YG9A 2NOLA 1LWWA 2XHIA 3OYBA 5DPKA 4E7HA 1N3AA 3OYEA 3OS0A 3S3NA 4IKFA 4HSBA 1RRQA 1WEGA 3CVSA 1VRLA 4AIAA 3OYAA 4B21A 2NOBA 1PU7A 2OFIA 3CWSA 5FRNA 1P7MA 3VW4A 5CHZA 3OY9A 3OYNA 1WEIA 5KN8A 2YG8A 4E9EA 4EJYA 1FN7A 2NOIA 4PIIA 3OYKA 1U84A
chains in the Genus database with same CATH topology
4UNFA 3CWUA 4OFHA 1WEFA 1KQJA 4B23A 4EA5A 2H56A 1M3QA 2JHJA 3KNTA 1KO9A 1P59A 2ABKA 4E9HA 4OFAA 1RRSA 1LWYA 1PU8A 4E9FA 1LWVA 1YQMA 1KG5A 4EVVA 5AN4A 1KG6A 3I0XA 3OGDA 1KG7A 3FSPA 1EBMA 2OFKA 2I5WA 1MUNA 3OH6A 1NKUA 3N5NX 4AI4A 4AI5A 4OFEA 2NOEA 1XG7A 1KG4A 1KG2A 4E9GA 5KN9A 4YOQA 3FHFA 3KTUA 3F0ZA 1ORNA 1MUYA 4DK9A 1N39A 1LMZA 1XQOA 3S6IA 1NGNA 1HU0A 3CWTA 1YQKA 3I0WA 3D4VA 3FHGA 4B22A 3G0QA 1YQRA 4EW4A 3F10A 1KG3A 1MPGA 3CWAA 1KEAA 2JHNA 1DIZA 4EW0A 3CVTA 2JG6A 2NOZA 4UOBA 3OH9A 1M3HA 1ORPA 1XQPA 1N3CA 2NOHA 1PU6A 3IH7A 4B24A 4EA4A 1MUDA 3CW7A 1PVSA 4YPHA 2NOFA 4EJZA 1YQLA 3IHOA 3N0UA 4YPRA 2YG9A 2NOLA 1LWWA 2XHIA 5DPKA 1N3AA 4HSBA 1RRQA 1WEGA 3CVSA 1VRLA 4AIAA 4B21A 2NOBA 1PU7A 2OFIA 3CWSA 1P7MA 5CHZA 1WEIA 5KN8A 2YG8A 4E9EA 4EJYA 1FN7A 2NOIA 4PIIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UNF A;  3CWU A;  4OFH A;  1WEF A;  1KQJ A;  4B23 A;  4EA5 A;  2H56 A;  1M3Q A;  2JHJ A;  3KNT A;  1KO9 A;  1P59 A;  2ABK A;  4E9H A;  4OFA A;  1RRS A;  1LWY A;  1PU8 A;  4E9F A;  1LWV A;  1YQM A;  1KG5 A;  4EVV A;  5AN4 A;  1KG6 A;  3I0X A;  3OGD A;  1KG7 A;  3FSP A;  1EBM A;  2OFK A;  2I5W A;  1MUN A;  3OH6 A;  1NKU A;  3N5N X;  4AI4 A;  4AI5 A;  4OFE A;  2NOE A;  1XG7 A;  1KG4 A;  1KG2 A;  4E9G A;  5KN9 A;  4YOQ A;  3FHF A;  3KTU A;  3F0Z A;  1ORN A;  1MUY A;  4DK9 A;  1N39 A;  1LMZ A;  1XQO A;  3S6I A;  1NGN A;  1HU0 A;  3CWT A;  1YQK A;  3I0W A;  3D4V A;  3FHG A;  4B22 A;  3G0Q A;  1YQR A;  4EW4 A;  3F10 A;  1KG3 A;  1MPG A;  3CWA A;  1KEA A;  2JHN A;  1DIZ A;  4EW0 A;  3CVT A;  2JG6 A;  2NOZ A;  4UOB A;  3OH9 A;  1M3H A;  1ORP A;  1XQP A;  1N3C A;  2NOH A;  1PU6 A;  3IH7 A;  4B24 A;  4EA4 A;  1MUD A;  3CW7 A;  1PVS A;  4YPH A;  2NOF A;  4EJZ A;  1YQL A;  3IHO A;  3N0U A;  4YPR A;  2YG9 A;  2NOL A;  1LWW A;  2XHI A;  5DPK A;  1N3A A;  4HSB A;  1RRQ A;  1WEG A;  3CVS A;  1VRL A;  4AIA A;  4B21 A;  2NOB A;  1PU7 A;  2OFI A;  3CWS A;  1P7M A;  5CHZ A;  1WEI A;  5KN8 A;  2YG8 A;  4E9E A;  4EJY A;  1FN7 A;  2NOI A;  4PII A; 
#chains in the Genus database with same CATH topology
 4UNF A;  3CWU A;  4OFH A;  1WEF A;  4BE0 A;  1KQJ A;  4B23 A;  2W03 A;  2V75 A;  4EA5 A;  2H56 A;  1M3Q A;  3OYL A;  2JHJ A;  3KNT A;  1KO9 A;  3L2V A;  1P59 A;  2ABK A;  4E9H A;  3L2R A;  4OFA A;  4BDY A;  1RRS A;  1LWY A;  1PU8 A;  4E9F A;  1LWV A;  1YQM A;  4ZTJ A;  1KG5 A;  4EVV A;  5AN4 A;  2W04 A;  1KG6 A;  3NNQ A;  3I0X A;  3OGD A;  1KG7 A;  3FSP A;  4E7K A;  1EBM A;  3OYM A;  2OFK A;  2I5W A;  1MUN A;  3L2U A;  4BDZ A;  3OYC A;  3OYI A;  3S3M A;  3OH6 A;  3OS2 A;  1NKU A;  3N5N X;  4AI4 A;  4AI5 A;  3OYH A;  3S3O A;  4OFE A;  3OYJ A;  2NOE A;  1XG7 A;  3L2Q A;  1KG4 A;  1KG2 A;  5KN9 A;  4E9G A;  4YOQ A;  3FHF A;  3KTU A;  5FRM A;  3F0Z A;  1ORN A;  1MUY A;  4BE2 A;  3R2X C;  4DK9 A;  1N39 A;  1LMZ A;  4BE1 A;  5FRO A;  3LCN A;  1XQO A;  4E7I A;  3S6I A;  1NGN A;  1HU0 A;  3CWT A;  1YQK A;  3I0W A;  3D4V A;  3FHG A;  4B22 A;  4BAC A;  3G0Q A;  4NZG A;  1YQR A;  4EW4 A;  3F10 A;  1KG3 A;  1MPG A;  3CWA A;  3OYF A;  1KEA A;  2JHN A;  1DIZ A;  2JPS A;  4EW0 A;  3CVT A;  2JG6 A;  4E7J A;  4UOB A;  2NOZ A;  3OH9 A;  1M3H A;  1ORP A;  3OYD A;  1XQP A;  1N3C A;  2NOH A;  1PU6 A;  3IH7 A;  4B24 A;  4EA4 A;  4E7L A;  1MUD A;  3CW7 A;  1PVS A;  4YPH A;  2NOF A;  4ZTF A;  3L2W A;  4EJZ A;  3OS1 A;  1YQL A;  3IHO A;  3N0U A;  4YPR A;  3OYG A;  2YG9 A;  2NOL A;  1LWW A;  2XHI A;  3OYB A;  5DPK A;  4E7H A;  1N3A A;  3OYE A;  3OS0 A;  3S3N A;  4IKF A;  4HSB A;  1RRQ A;  1WEG A;  3CVS A;  1VRL A;  4AIA A;  3OYA A;  4B21 A;  2NOB A;  1PU7 A;  2OFI A;  3CWS A;  5FRN A;  1P7M A;  3VW4 A;  5CHZ A;  3OY9 A;  3OYN A;  1WEI A;  5KN8 A;  2YG8 A;  4E9E A;  4EJY A;  1FN7 A;  2NOI A;  4PII A;  3OYK A;  1U84 A; 
#chains in the Genus database with same CATH homology
 4UNF A;  3CWU A;  4OFH A;  1WEF A;  1KQJ A;  4B23 A;  4EA5 A;  2H56 A;  1M3Q A;  2JHJ A;  3KNT A;  1KO9 A;  1P59 A;  2ABK A;  4E9H A;  4OFA A;  1RRS A;  1LWY A;  1PU8 A;  4E9F A;  1LWV A;  1YQM A;  1KG5 A;  4EVV A;  5AN4 A;  1KG6 A;  3I0X A;  3OGD A;  1KG7 A;  3FSP A;  1EBM A;  2OFK A;  2I5W A;  1MUN A;  3OH6 A;  1NKU A;  3N5N X;  4AI4 A;  4AI5 A;  4OFE A;  2NOE A;  1XG7 A;  1KG4 A;  1KG2 A;  4E9G A;  5KN9 A;  4YOQ A;  3FHF A;  3KTU A;  3F0Z A;  1ORN A;  1MUY A;  4DK9 A;  1N39 A;  1LMZ A;  1XQO A;  3S6I A;  1NGN A;  1HU0 A;  3CWT A;  1YQK A;  3I0W A;  3D4V A;  3FHG A;  4B22 A;  3G0Q A;  1YQR A;  4EW4 A;  3F10 A;  1KG3 A;  1MPG A;  3CWA A;  1KEA A;  2JHN A;  1DIZ A;  4EW0 A;  3CVT A;  2JG6 A;  2NOZ A;  4UOB A;  3OH9 A;  1M3H A;  1ORP A;  1XQP A;  1N3C A;  2NOH A;  1PU6 A;  3IH7 A;  4B24 A;  4EA4 A;  1MUD A;  3CW7 A;  1PVS A;  4YPH A;  2NOF A;  4EJZ A;  1YQL A;  3IHO A;  3N0U A;  4YPR A;  2YG9 A;  2NOL A;  1LWW A;  2XHI A;  5DPK A;  1N3A A;  4HSB A;  1RRQ A;  1WEG A;  3CVS A;  1VRL A;  4AIA A;  4B21 A;  2NOB A;  1PU7 A;  2OFI A;  3CWS A;  1P7M A;  5CHZ A;  1WEI A;  5KN8 A;  2YG8 A;  4E9E A;  4EJY A;  1FN7 A;  2NOI A;  4PII A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...