1ORNA

Structure of a trapped endonuclease iii-dna covalent intermediate: estranged-guanine complex
Total Genus 79
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
214
structure length
214
Chain Sequence
MLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3'
publication title Structure of a Trapped Endonuclease III-DNA Covalent Intermediate
pubmed doi rcsb
source organism Geobacillus stearothermophilus
molecule tags Hydrolase/dna
total genus 79
structure length 214
sequence length 214
ec nomenclature
pdb deposition date 2003-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1ornA01
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1ornA02
3CWSA 3KTUA 1WEIA 1PVSA 4YOQA 2NOZA 1PU8A 2I5WA 3IHOA 2YG8A 2NOIA 3CWTA 3D4VA 2YG9A 1MPGA 1KG4A 3I0WA 5DPKA 1PU6A 4EA5A 1N3CA 4DK9A 1FN7A 2JG6A 1KG7A 1XQPA 4B21A 1YQKA 4YPHA 1ORPA 4AI5A 3FSPA 2H56A 1NGNA 1YQMA 3CVTA 4OFHA 1PU7A 1MUNA 4E9GA 2NOHA 3CWAA 1KQJA 3OGDA 2OFKA 1EBMA 3OH9A 1MUYA 3F10A 3FHGA 4B22A 1ORNA 2NOEA 1KG2A 1LMZA 4YPRA 1KO9A 1N3AA 1LWYA 3I0XA 1NKUA 5KN8A 1KEAA 1LWVA 1WEFA 1YQRA 4UNFA 3N0UA 1RRSA 4HSBA 3F0ZA 1M3HA 1XQOA 1P7MA 4UOBA 2XHIA 1N39A 4EW4A 2JHJA 2ABKA 1VRLA 4OFEA 3OH6A 3S6IA 1KG3A 4E9EA 3CVSA 1HU0A 4PIIA 4OFAA 4E9FA 1YQLA 1WEGA 5CHZA 2NOFA 3G0QA 3KNTA 2OFIA 2NOBA 4AI4A 2NOLA 3IH7A 4B24A 4EW0A 1RRQA 1KG6A 1M3QA 1DIZA 1MUDA 1P59A 4EJZA 5KN9A 3CW7A 3N5NX 4EJYA 2JHNA 4E9HA 1XG7A 5AN4A 4EA4A 1LWWA 4B23A 3CWUA 3FHFA 4AIAA 1KG5A 4EVVA
chains in the Genus database with same CATH superfamily
3CWSA 3KTUA 1WEIA 3OYEA 3OYJA 1PVSA 4YOQA 3OYIA 2NOZA 3L2RA 1PU8A 2I5WA 4BE1A 3OYKA 4E7IA 3IHOA 2YG8A 2NOIA 3CWTA 3D4VA 2YG9A 1MPGA 4E7KA 1KG4A 2W04A 3OYMA 3I0WA 5DPKA 1PU6A 4E7JA 4EA5A 4ZTFA 1N3CA 4DK9A 1FN7A 3OYAA 2JG6A 1KG7A 1XQPA 4B21A 3OS0A 1YQKA 4YPHA 1ORPA 4AI5A 4NZGA 3FSPA 2H56A 3L2WA 1NGNA 3S3NA 1YQMA 3CVTA 4OFHA 1PU7A 1MUNA 4E9GA 3OS1A 3L2QA 3CWAA 2NOHA 1KQJA 3OGDA 4E7LA 2OFKA 4E7HA 1EBMA 3OH9A 1MUYA 2JPSA 3F10A 3FHGA 4B22A 1ORNA 2NOEA 3S3OA 1KG2A 3OS2A 3S3MA 1LMZA 4YPRA 1KO9A 1N3AA 3OYLA 1LWYA 3I0XA 1NKUA 5KN8A 1KEAA 1LWVA 1WEFA 1YQRA 4UNFA 3N0UA 1RRSA 4HSBA 4BACA 3F0ZA 3R2XC 4ZTJA 1M3HA 1XQOA 1P7MA 5FRMA 4UOBA 2XHIA 1N39A 1U84A 4EW4A 2JHJA 5FRNA 4BDZA 2ABKA 1VRLA 4OFEA 3OH6A 3S6IA 1KG3A 3L2VA 2V75A 4E9EA 3CVSA 1HU0A 2W03A 3OYBA 3LCNA 4IKFA 4PIIA 3VW4A 4OFAA 4E9FA 3OYCA 4BE0A 1YQLA 1WEGA 5CHZA 2NOFA 3G0QA 3KNTA 2OFIA 3L2UA 3OYFA 2NOBA 4AI4A 2NOLA 3NNQA 4BE2A 3IH7A 4B24A 4EW0A 1RRQA 3OY9A 1KG6A 5FROA 1M3QA 1DIZA 1MUDA 1P59A 4EJZA 5KN9A 3OYDA 3OYHA 3CW7A 3N5NX 4EJYA 2JHNA 4E9HA 1XG7A 5AN4A 3OYNA 4EA4A 1LWWA 4B23A 3CWUA 3FHFA 4AIAA 3OYGA 4BDYA 1KG5A 4EVVA
chains in the Genus database with same CATH topology
3CWSA 3KTUA 1WEIA 1PVSA 4YOQA 2NOZA 1PU8A 2I5WA 3IHOA 2YG8A 2NOIA 3CWTA 3D4VA 2YG9A 1MPGA 1KG4A 3I0WA 5DPKA 1PU6A 4EA5A 1N3CA 4DK9A 1FN7A 2JG6A 1KG7A 1XQPA 4B21A 1YQKA 4YPHA 1ORPA 4AI5A 3FSPA 2H56A 1NGNA 1YQMA 3CVTA 4OFHA 1PU7A 1MUNA 4E9GA 2NOHA 3CWAA 1KQJA 3OGDA 2OFKA 1EBMA 3OH9A 1MUYA 3F10A 3FHGA 4B22A 1ORNA 2NOEA 1KG2A 1LMZA 4YPRA 1KO9A 1N3AA 1LWYA 3I0XA 1NKUA 5KN8A 1KEAA 1LWVA 1WEFA 1YQRA 4UNFA 3N0UA 1RRSA 4HSBA 3F0ZA 1M3HA 1XQOA 1P7MA 4UOBA 2XHIA 1N39A 4EW4A 2JHJA 2ABKA 1VRLA 4OFEA 3OH6A 3S6IA 1KG3A 4E9EA 3CVSA 1HU0A 4PIIA 4OFAA 4E9FA 1YQLA 1WEGA 5CHZA 2NOFA 3G0QA 3KNTA 2OFIA 2NOBA 4AI4A 2NOLA 3IH7A 4B24A 4EW0A 1RRQA 1KG6A 1M3QA 1DIZA 1MUDA 1P59A 4EJZA 5KN9A 3CW7A 3N5NX 4EJYA 2JHNA 4E9HA 1XG7A 5AN4A 4EA4A 1LWWA 4B23A 3CWUA 3FHFA 4AIAA 1KG5A 4EVVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CWS A;  3KTU A;  1WEI A;  1PVS A;  4YOQ A;  2NOZ A;  1PU8 A;  2I5W A;  3IHO A;  2YG8 A;  2NOI A;  3CWT A;  3D4V A;  2YG9 A;  1MPG A;  1KG4 A;  3I0W A;  5DPK A;  1PU6 A;  4EA5 A;  1N3C A;  4DK9 A;  1FN7 A;  2JG6 A;  1KG7 A;  1XQP A;  4B21 A;  1YQK A;  4YPH A;  1ORP A;  4AI5 A;  3FSP A;  2H56 A;  1NGN A;  1YQM A;  3CVT A;  4OFH A;  1PU7 A;  1MUN A;  4E9G A;  2NOH A;  3CWA A;  1KQJ A;  3OGD A;  2OFK A;  1EBM A;  3OH9 A;  1MUY A;  3F10 A;  3FHG A;  4B22 A;  1ORN A;  2NOE A;  1KG2 A;  1LMZ A;  4YPR A;  1KO9 A;  1N3A A;  1LWY A;  3I0X A;  1NKU A;  5KN8 A;  1KEA A;  1LWV A;  1WEF A;  1YQR A;  4UNF A;  3N0U A;  1RRS A;  4HSB A;  3F0Z A;  1M3H A;  1XQO A;  1P7M A;  4UOB A;  2XHI A;  1N39 A;  4EW4 A;  2JHJ A;  2ABK A;  1VRL A;  4OFE A;  3OH6 A;  3S6I A;  1KG3 A;  4E9E A;  3CVS A;  1HU0 A;  4PII A;  4OFA A;  4E9F A;  1YQL A;  1WEG A;  5CHZ A;  2NOF A;  3G0Q A;  3KNT A;  2OFI A;  2NOB A;  4AI4 A;  2NOL A;  3IH7 A;  4B24 A;  4EW0 A;  1RRQ A;  1KG6 A;  1M3Q A;  1DIZ A;  1MUD A;  1P59 A;  4EJZ A;  5KN9 A;  3CW7 A;  3N5N X;  4EJY A;  2JHN A;  4E9H A;  1XG7 A;  5AN4 A;  4EA4 A;  1LWW A;  4B23 A;  3CWU A;  3FHF A;  4AIA A;  1KG5 A;  4EVV A; 
#chains in the Genus database with same CATH topology
 3CWS A;  3KTU A;  1WEI A;  3OYE A;  3OYJ A;  1PVS A;  4YOQ A;  3OYI A;  2NOZ A;  3L2R A;  1PU8 A;  2I5W A;  4BE1 A;  3OYK A;  4E7I A;  3IHO A;  2YG8 A;  2NOI A;  3CWT A;  3D4V A;  2YG9 A;  1MPG A;  4E7K A;  1KG4 A;  2W04 A;  3OYM A;  3I0W A;  5DPK A;  1PU6 A;  4E7J A;  4EA5 A;  4ZTF A;  1N3C A;  4DK9 A;  1FN7 A;  3OYA A;  2JG6 A;  1KG7 A;  1XQP A;  4B21 A;  3OS0 A;  1YQK A;  4YPH A;  1ORP A;  4AI5 A;  4NZG A;  3FSP A;  2H56 A;  3L2W A;  1NGN A;  3S3N A;  1YQM A;  3CVT A;  4OFH A;  1PU7 A;  1MUN A;  4E9G A;  3OS1 A;  3L2Q A;  3CWA A;  2NOH A;  1KQJ A;  3OGD A;  4E7L A;  2OFK A;  4E7H A;  1EBM A;  3OH9 A;  1MUY A;  2JPS A;  3F10 A;  3FHG A;  4B22 A;  1ORN A;  2NOE A;  3S3O A;  1KG2 A;  3OS2 A;  3S3M A;  1LMZ A;  4YPR A;  1KO9 A;  1N3A A;  3OYL A;  1LWY A;  3I0X A;  1NKU A;  5KN8 A;  1KEA A;  1LWV A;  1WEF A;  1YQR A;  4UNF A;  3N0U A;  1RRS A;  4HSB A;  4BAC A;  3F0Z A;  3R2X C;  4ZTJ A;  1M3H A;  1XQO A;  1P7M A;  5FRM A;  4UOB A;  2XHI A;  1N39 A;  1U84 A;  4EW4 A;  2JHJ A;  5FRN A;  4BDZ A;  2ABK A;  1VRL A;  4OFE A;  3OH6 A;  3S6I A;  1KG3 A;  3L2V A;  2V75 A;  4E9E A;  3CVS A;  1HU0 A;  2W03 A;  3OYB A;  3LCN A;  4IKF A;  4PII A;  3VW4 A;  4OFA A;  4E9F A;  3OYC A;  4BE0 A;  1YQL A;  1WEG A;  5CHZ A;  2NOF A;  3G0Q A;  3KNT A;  2OFI A;  3L2U A;  3OYF A;  2NOB A;  4AI4 A;  2NOL A;  3NNQ A;  4BE2 A;  3IH7 A;  4B24 A;  4EW0 A;  1RRQ A;  3OY9 A;  1KG6 A;  5FRO A;  1M3Q A;  1DIZ A;  1MUD A;  1P59 A;  4EJZ A;  5KN9 A;  3OYD A;  3OYH A;  3CW7 A;  3N5N X;  4EJY A;  2JHN A;  4E9H A;  1XG7 A;  5AN4 A;  3OYN A;  4EA4 A;  1LWW A;  4B23 A;  3CWU A;  3FHF A;  4AIA A;  3OYG A;  4BDY A;  1KG5 A;  4EVV A; 
#chains in the Genus database with same CATH homology
 3CWS A;  3KTU A;  1WEI A;  1PVS A;  4YOQ A;  2NOZ A;  1PU8 A;  2I5W A;  3IHO A;  2YG8 A;  2NOI A;  3CWT A;  3D4V A;  2YG9 A;  1MPG A;  1KG4 A;  3I0W A;  5DPK A;  1PU6 A;  4EA5 A;  1N3C A;  4DK9 A;  1FN7 A;  2JG6 A;  1KG7 A;  1XQP A;  4B21 A;  1YQK A;  4YPH A;  1ORP A;  4AI5 A;  3FSP A;  2H56 A;  1NGN A;  1YQM A;  3CVT A;  4OFH A;  1PU7 A;  1MUN A;  4E9G A;  2NOH A;  3CWA A;  1KQJ A;  3OGD A;  2OFK A;  1EBM A;  3OH9 A;  1MUY A;  3F10 A;  3FHG A;  4B22 A;  1ORN A;  2NOE A;  1KG2 A;  1LMZ A;  4YPR A;  1KO9 A;  1N3A A;  1LWY A;  3I0X A;  1NKU A;  5KN8 A;  1KEA A;  1LWV A;  1WEF A;  1YQR A;  4UNF A;  3N0U A;  1RRS A;  4HSB A;  3F0Z A;  1M3H A;  1XQO A;  1P7M A;  4UOB A;  2XHI A;  1N39 A;  4EW4 A;  2JHJ A;  2ABK A;  1VRL A;  4OFE A;  3OH6 A;  3S6I A;  1KG3 A;  4E9E A;  3CVS A;  1HU0 A;  4PII A;  4OFA A;  4E9F A;  1YQL A;  1WEG A;  5CHZ A;  2NOF A;  3G0Q A;  3KNT A;  2OFI A;  2NOB A;  4AI4 A;  2NOL A;  3IH7 A;  4B24 A;  4EW0 A;  1RRQ A;  1KG6 A;  1M3Q A;  1DIZ A;  1MUD A;  1P59 A;  4EJZ A;  5KN9 A;  3CW7 A;  3N5N X;  4EJY A;  2JHN A;  4E9H A;  1XG7 A;  5AN4 A;  4EA4 A;  1LWW A;  4B23 A;  3CWU A;  3FHF A;  4AIA A;  1KG5 A;  4EVV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...