1OTJA

Crystal structure of apo (iron-free) taud
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
281
structure length
281
Chain Sequence
SERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQVVFLRDQAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDVTFIETPPAGAILAAKELPSTGGDTLWTSGIAAYEALSVPFRQLLSGLRAEHDFRKSFPEYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKESEALLSFLFAHITKPEFQVRWRWQPNDIAIWDNRVTQHYANADYLPQRRIMHRATILGDKPFYRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Alpha-Ketoglutarate-Dependent Taurine Dioxygenase
publication title Substrate-induced conformational changes in Escherichia coli taurine/alpha-ketoglutarate dioxygenase and insight into the oligomeric structure
pubmed doi rcsb
source organism Escherichia coli
total genus 80
structure length 281
sequence length 281
chains with identical sequence B, C, D
ec nomenclature ec 1.14.11.17: Taurine dioxygenase.
pdb deposition date 2003-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 1otjA00
1NX8A 4M2FA 2R6SA 4BGKA 2OG7A 3R1JA 4C8RA 5HSXA 4M2CA 3SWTA 1OIJC 1DS1A 2WBQA 4BHGA 1GQWA 3EATX 4BHIA 2WBOA 4M27A 1OIJA 4M2GA 1JR7A 1OIKA 1OIHA 3N6WA 1GY9A 2Q4AA 3V17A 1OTJA 1VZ4A 2OG5A 1DRTA 1DRYA 1DS0A 4M2EA 4M2IA 1OIIA 2OG6A 4YLMX 3O2GA 3PVJA 1OIJB 4BG1A 4BGMA 4BHFA 1OS7A 4M26A 5KEUA 4CWDA 4FFAA 5J92A 1NX4A 3V15A 4M23A 4OJ8A 1VZ5A 1Y0ZA 2WBPA 3MS5A 4J5IA 4NE0A 4C5WA 4CVYA 1GVGA 4M25A 4Y0EA
chains in the Genus database with same CATH superfamily
1NX8A 4M2FA 2R6SA 4BGKA 2OG7A 3R1JA 4C8RA 5HSXA 4M2CA 3SWTA 1OIJC 1DS1A 2WBQA 4BHGA 1GQWA 3EATX 4BHIA 2WBOA 4M27A 1YOXA 1OIJA 4M2GA 1JR7A 1OIKA 1OIHA 1PG6A 3N6WA 1GY9A 2Q4AA 3V17A 1OTJA 1VZ4A 2OG5A 1DRTA 1DRYA 1DS0A 4M2EA 4M2IA 1OIIA 2OG6A 4YLMX 3O2GA 3PVJA 1OIJB 4BG1A 4BGMA 4BHFA 1OS7A 4M26A 5KEUA 4CWDA 4FFAA 5J92A 1NX4A 3V15A 4M23A 4OJ8A 1VZ5A 1Y0ZA 2WBPA 3MS5A 4J5IA 4NE0A 4C5WA 4CVYA 1GVGA 4M25A 4Y0EA
chains in the Genus database with same CATH topology
4JAAA 3KCYA 4M2CA 1DS1A 1GQWA 3KCXA 4BHIA 5JWPA 2XUMA 1JR7A 1GY9A 1OTJA 2OG5A 1DS0A 4AI8A 4BIOA 1OIIA 2WA4A 1OIJB 4BG1A 4M26A 2ILMA 3V15A 3D8CA 1VZ5A 1Y0ZA 4NE0A 4M25A 4Y0EA 1MZEA 1NX8A 4NR1A 2CGNA 3P3PA 4Z2WA 3R1JA 4C8RA 5HSXA 1OIJC 4M27A 4Z1VA 4M2GA 3N6WA 3V17A 2CGOA 1DRYA 1MZFA 4M2IA 3PVJA 1OS7A 4OJ8A 2WBPA 3OD4A 4M2FA 4B7EA 2R6SA 2OG7A 3SWTA 4BHGA 2WBQA 3EATX 1VZ4A 4M2EA 2Y0IA 2YC0A 1IZ3A 3O2GA 4BGMA 4BHFA 5KEUA 4CWDA 1NX4A 4M23A 4C5WA 3MS5A 1GVGA 2WA3A 2YDEA 1H2MA 4BGKA 2W0XA 2WBOA 1OIJA 1OIKA 1OIHA 1YCIA 2Q4AA 1H2KA 1DRTA 4B7KA 3P3NA 2OG6A 1H2LA 4FFAA 5J92A 4J5IA 1H2NA 4CVYA 4YLMX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NX8 A;  4M2F A;  2R6S A;  4BGK A;  2OG7 A;  3R1J A;  4C8R A;  5HSX A;  4M2C A;  3SWT A;  1OIJ C;  1DS1 A;  2WBQ A;  4BHG A;  1GQW A;  3EAT X;  4BHI A;  2WBO A;  4M27 A;  1OIJ A;  4M2G A;  1JR7 A;  1OIK A;  1OIH A;  3N6W A;  1GY9 A;  2Q4A A;  3V17 A;  1OTJ A;  1VZ4 A;  2OG5 A;  1DRT A;  1DRY A;  1DS0 A;  4M2E A;  4M2I A;  1OII A;  2OG6 A;  4YLM X;  3O2G A;  3PVJ A;  1OIJ B;  4BG1 A;  4BGM A;  4BHF A;  1OS7 A;  4M26 A;  5KEU A;  4CWD A;  4FFA A;  5J92 A;  1NX4 A;  3V15 A;  4M23 A;  4OJ8 A;  1VZ5 A;  1Y0Z A;  2WBP A;  3MS5 A;  4J5I A;  4NE0 A;  4C5W A;  4CVY A;  1GVG A;  4M25 A;  4Y0E A; 
#chains in the Genus database with same CATH topology
 1NX8 A;  4M2F A;  2R6S A;  4BGK A;  2OG7 A;  3R1J A;  4C8R A;  5HSX A;  4M2C A;  3SWT A;  1OIJ C;  1DS1 A;  2WBQ A;  4BHG A;  1GQW A;  3EAT X;  4BHI A;  2WBO A;  4M27 A;  1YOX A;  1OIJ A;  4M2G A;  1JR7 A;  1OIK A;  1OIH A;  1PG6 A;  3N6W A;  1GY9 A;  2Q4A A;  3V17 A;  1OTJ A;  1VZ4 A;  2OG5 A;  1DRT A;  1DRY A;  1DS0 A;  4M2E A;  4M2I A;  1OII A;  2OG6 A;  4YLM X;  3O2G A;  3PVJ A;  1OIJ B;  4BG1 A;  4BGM A;  4BHF A;  1OS7 A;  4M26 A;  5KEU A;  4CWD A;  4FFA A;  5J92 A;  1NX4 A;  3V15 A;  4M23 A;  4OJ8 A;  1VZ5 A;  1Y0Z A;  2WBP A;  3MS5 A;  4J5I A;  4NE0 A;  4C5W A;  4CVY A;  1GVG A;  4M25 A;  4Y0E A; 
#chains in the Genus database with same CATH homology
 4JAA A;  3KCY A;  4M2C A;  1DS1 A;  1GQW A;  3KCX A;  4BHI A;  5JWP A;  2XUM A;  1JR7 A;  1GY9 A;  1OTJ A;  2OG5 A;  1DS0 A;  4AI8 A;  4BIO A;  1OII A;  2WA4 A;  1OIJ B;  4BG1 A;  4M26 A;  2ILM A;  3V15 A;  3D8C A;  1VZ5 A;  1Y0Z A;  4NE0 A;  4M25 A;  4Y0E A;  1MZE A;  1NX8 A;  4NR1 A;  2CGN A;  3P3P A;  4Z2W A;  3R1J A;  4C8R A;  5HSX A;  1OIJ C;  4M27 A;  4Z1V A;  4M2G A;  3N6W A;  3V17 A;  2CGO A;  1DRY A;  1MZF A;  4M2I A;  3PVJ A;  1OS7 A;  4OJ8 A;  2WBP A;  3OD4 A;  4M2F A;  4B7E A;  2R6S A;  2OG7 A;  3SWT A;  4BHG A;  2WBQ A;  3EAT X;  1VZ4 A;  4M2E A;  2Y0I A;  2YC0 A;  1IZ3 A;  3O2G A;  4BGM A;  4BHF A;  5KEU A;  4CWD A;  1NX4 A;  4M23 A;  4C5W A;  3MS5 A;  1GVG A;  2WA3 A;  2YDE A;  1H2M A;  4BGK A;  2W0X A;  2WBO A;  1OIJ A;  1OIK A;  1OIH A;  1YCI A;  2Q4A A;  1H2K A;  1DRT A;  4B7K A;  3P3N A;  2OG6 A;  1H2L A;  4FFA A;  5J92 A;  4J5I A;  1H2N A;  4CVY A;  4YLM X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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