The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
185
|
sequence length |
627
|
structure length |
573
|
Chain Sequence |
TLHDKQIRICHLFEQLSRLKNVGKLQPGAIFSCFHPDHLEEARHLYEVFWEAGDFNDFIEIAKEARTFVNEGLFAFAAEVAVLHRDDCKGLYVPPVQEIFPDKFIPSAAINEAFKKGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFYYMHQQMCARYDCERLSNGMHRMLPFNNFDEPLAGYAPHLTHVASGKYYSPRPDGLKLRDLGDIEISEMVRMRERILDSIHLGYVISEDGSHKTLDELHGTDILGALVESSYESVNHEYYGNLHNWGHVTMARIHDPDGRFHEEPGVMSDTSTSLRDPIFYNWHRFIDNIFHEYKNTLKPYDHDVLNFPDIQVQDVTLHARVDNVVHTFMREQELELKHGSIKAKYYHLDHEPFSYAVNVQNNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKTDLHPGKNTVVRHSLDSSVTLSHQPTFEDLLSEYCSCGWPSHLLVPKGNVAGMEYHLFVMLTDWDKDKVDVACVDAVSYCGARDHKYPDKKPMGFPFDRPIHTEHISDFLTNNMFIKDIKIKFH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystallographic analysis of oxygenated and deoxygenated states of arthropod hemocyanin shows unusual differences.
pubmed doi rcsb |
| molecule keywords |
HEMOCYANIN (SUBUNIT TYPE II)
|
| molecule tags |
Oxygen transport
|
| source organism |
Limulus polyphemus
|
| total genus |
185
|
| structure length |
573
|
| sequence length |
627
|
| ec nomenclature | |
| pdb deposition date | 1995-01-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00372 | Hemocyanin_M | Hemocyanin, copper containing domain |
| A | PF03722 | Hemocyanin_N | Hemocyanin, all-alpha domain |
| A | PF03723 | Hemocyanin_C | Hemocyanin, ig-like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | di-copper center containing domain from catechol oxidase | Di-copper center containing domain from catechol oxidase | ||
| Mainly Alpha | Up-down Bundle | Hemocyanin, N-terminal domain | Hemocyanin, N-terminal domain | ||
| Mainly Beta | Sandwich | Immunoglobulin-like | Hemocyanin, C-terminal domain |
