1P2ZA

Refinement of adenovirus type 2 hexon with cns
Total Genus 224
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
224
sequence length
958
structure length
887
Chain Sequence
MMPQWSYMHISGQDASEYLSPGLVQFARATETYFSLNNKFRNPTVAPTHDVTTDRSQRLTLRFIPVDREDTAYSYKARFTLAVGDNRVLDMASTYFDIRGVLDRGPTFKPYSGTAYNALAPKGAPNSCEWEQTHVYAQAPLSGETITKSGLQIGPVYADPSYQPEPQIGESQWNEADANAAGGRVLKKTTPMKPCYGSYARPTNPFGGQSVLVLPKVDLQFFSNATKPKVVLYSEDVNMETPDTHLSYKPGKGDENSKAMLGQQSMPNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMWNQAVDSYDPDVRIIENHGTEDELPNYCFPLGGIGVTDTYQAIKATTWTKDETFATRNEIGVGNNFAMEINLNANLWRNFLYSNIALYLPDKLKYNPTNVEISDNPNTYDYMNKRVVAPGLVDCYINLGARWSLDYMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMVLQSSLGNDLRVDGASIKFDSICLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWAFTRLKTKETPSLGSGYDPYYTYSGSIPYLDGTFYLNHTFKKVAITFDSSVSWPGNDRLLTPNEFEIKRSVDGEGYNVAQCNMTKDWFLVQMLANYNIGYQGFYIPESYKDRMYSFFRNFQPMSRQVVDDTKYKEYQQVGILHQHNNSGFVGYLAPTMREGQAYPANVPYPLIGKTAVDSITQKKFLCDRTLWRIPFSSNFMSMGALTDLGQNLLYANSAHALDMTFEVDPMDEPTLLYVLFEVFDVVRVHQPHRGVIETVYLRTPFSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Hexon protein
publication title Structural and phylogenetic analysis of adenovirus hexons by use of high-resolution x-ray crystallographic, molecular modeling, and sequence-based methods
pubmed doi rcsb
total genus 224
structure length 887
sequence length 958
ec nomenclature
pdb deposition date 2003-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01065 Adeno_hexon Hexon, adenovirus major coat protein, N-terminal domain
A PF03678 Adeno_hexon_C Hexon, adenovirus major coat protein, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.9.10 Mainly Beta Distorted Sandwich Adenovirus Type 2 Hexon; domain 4 Adenovirus Type 2 Hexon, domain 4 1p2zA04
2.170.9.10 Mainly Beta Beta Complex Adenovirus Type 2 Hexon; domain 1 Adenovirus Type 2 Hexon, domain 1 1p2zA01
3.90.39.10 Alpha Beta Alpha-Beta Complex Hexon Major Viral Coat Protein; domain 2 Hexon Major Viral Coat Protein, domain 2 1p2zA02
3.90.249.10 Alpha Beta Alpha-Beta Complex Hexon Major Viral Coat Protein; domain 3 Hexon Major Viral Coat Protein, domain 3 1p2zA03
1P30A 1P2ZA 2OBEA 2INYA
chains in the Genus database with same CATH superfamily
1HX6A 1HQNA 1CJDA 1P30A 2OBEA 1P2ZA 2INYA
chains in the Genus database with same CATH topology
1P30A 1P2ZA 2OBEA 2INYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P30 A;  1P2Z A;  2OBE A;  2INY A; 
#chains in the Genus database with same CATH topology
 1HX6 A;  1HQN A;  1CJD A;  1P30 A;  2OBE A;  1P2Z A;  2INY A; 
#chains in the Genus database with same CATH homology
 1P30 A;  1P2Z A;  2OBE A;  2INY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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