1P5DX

Enzyme-ligand complex of p. aeruginosa pmm/pgm
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
455
structure length
454
Chain Sequence
LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Phosphomannomutase
publication title Structural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Isomerase
total genus 170
structure length 454
sequence length 455
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2003-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
X PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1p5dX04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1p5dX03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1p5dX01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1p5dX02
2JPIA 1C47A 4WX8A 4HJHA 1C4GA 4BJUA 5EPCA 1VKLA 3RSMA 3OLPA 2EIUA 5BMPA 1LXTA 1TUOA 1PCJX 1KFIA 1WJWA 2DKAA 1P5GX 5HSHA 1KFQA 2Z0FA 3BKQX 5JN5A 2FKFA 2FKMX 3ENOC 1K2YX 2FUVA 1K35A 5JMVD 1PCMX 3UW2A 2H5AX 3ENCA 3NA5A 4MRQA 2DKDA 5F9CA 2H4LX 4IL8A 5KL0A 3C04A 5BMNA 2DKCA 1JDYA 1P5DX 3PMGA 2EHPA 4WXAA 4QG5A 3I3WA 3PDKA 2F7LA 1WQAA
chains in the Genus database with same CATH superfamily
2JPIA 4HJHA 1N3AA 1QNCA 1C4GA 1TBPA 3F10A 2NOHA 1LWWA 4D7RA 5EPCA 3IH7A 1LWYA 3OLPA 4ROCB 2HL8A 2HKPA 2D0CA 1TBAB 1TUOA 2Y8QA 3I0XA 3D4VA 1N39A 2HZMA 2DKAA 1C9BB 3TE5A 5HSHA 2OOXA 5JN5A 2FKMX 1K2YX 3OSEA 1VOKA 1K35A 3T4NA 1N3CA 1YQMA 3CVSA 3OSMA 1M3QA 3C04A 1YTBA 1VTLE 2DKCA 1JDYA 3I0WA 1PVSA 2YH5A 2F7LA 3I3WA 1QNBA 1C47A 4WX8A 1PCZA 3ULXA 3CVTA 1KY6A 2NVMA 5AN4A 4B0AA 1EUVA 1QTPA 3ASMA 3EIKA 4CFFA 2QLVA 2VJ0A 2YA3A 3EAYA 2EIUA 2QRCA 2I5WA 2O3OA 1NH2A 1AISA 3OSTA 3D7QA 3HS8A 3BKQX 3DPTA 3H1ZA 1DIZA 2JHNA 1QN8A 2V8QA 2FUVA 5JMVD 2XHIA 4ROEB 3CW7A 2NWVA 1PCMX 3UW2A 2H5AX 3ENCA 1QN9A 4D7QA 2DKDA 2MZ8A 3OGDA 1QNEA 2NOLA 3CWAA 4RODB 3VN5A 1JFIC 2FGTA 1QN3A 3OH6A 1WQAA 2HZSA 2NOBA 4EAKA 1KYUA 1NVPA 4BJUA 2IV9A 4EALA 1VKLA 2JOIA 3RSMA 2PWWA 2R5XA 1LXTA 4EAGA 1KFIA 1WJWA 1TGHA 2OOYA 1P5GX 1W80A 4WZSD 2Z0FA 4EJZA 4C7PA 3ENOC 1KO9A 1R4XA 1T6AA 5IYBP 1QTSA 5IYCP 1QN4A 1QN7A 1CDWA 1E42A 3RPJA 1NGMA 4MRQA 1EBMA 1QN6A 3OH9A 5F9CA 1RM1A 2H4LX 4IL8A 5KL0A 1M5Q1 1MP9A 2ZFDB 1VTOA 1P5DX 1V5SA 3PMGA 1B9KA 4QG5A 3PDKA 1YQKA 4EAJA 1YTFA 3KRMA 1KYFA 4EAIA 2NOFA 4DULA 1XSZA 1KYDA 1QN5A 3HS9A 2D0BA 3CWTA 1HU0A 3CWUA 1VOLB 1UL7A 4EJYA 1J3MA 2G30A 1M3HA 2QRDA 2NLVA 3F0ZA 3DPUA 2V9JA 4PY5A 2EHBD 2JHJA 5BMPA 2QR1A 1PCJX 1PZDA 2D0AA 2LAEA 3OC3C 1QNAA 2HL9A 1KFQA 1KY7A 3OCIA 2FKFA 4TPSA 3SNSA 2NOIA 2V92A 4I8OA 1YQRA 1LWVA 2Y8LA 2NOZA 1UT4A 2NOEA 3TDHA 1FN7A 3CWSA 3NA5A 2Z8UA 5IYDP 2MJ7A 1UT7A 5BMNA 3KTUA 1Q9UA 1MPGA 2QREA 1D3UA 2EHPA 4WXAA 3N89A 1YQLA 4Q11A 2IV8A
chains in the Genus database with same CATH topology
2JPIA 1C47A 4WX8A 4HJHA 1C4GA 4BJUA 5EPCA 1VKLA 3RSMA 3OLPA 2EIUA 5BMPA 1LXTA 1TUOA 1PCJX 1KFIA 1WJWA 2DKAA 1P5GX 5HSHA 1KFQA 2Z0FA 3BKQX 5JN5A 2FKFA 2FKMX 3ENOC 1K2YX 2FUVA 1K35A 5JMVD 1PCMX 3UW2A 2H5AX 3ENCA 3NA5A 4MRQA 2DKDA 5F9CA 2H4LX 4IL8A 5KL0A 3C04A 5BMNA 2DKCA 1JDYA 1P5DX 3PMGA 2EHPA 4WXAA 4QG5A 3I3WA 3PDKA 2F7LA 1WQAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JPI A;  1C47 A;  4WX8 A;  4HJH A;  1C4G A;  4BJU A;  5EPC A;  1VKL A;  3RSM A;  3OLP A;  2EIU A;  5BMP A;  1LXT A;  1TUO A;  1PCJ X;  1KFI A;  1WJW A;  2DKA A;  1P5G X;  5HSH A;  1KFQ A;  2Z0F A;  3BKQ X;  5JN5 A;  2FKF A;  2FKM X;  3ENO C;  1K2Y X;  2FUV A;  1K35 A;  5JMV D;  1PCM X;  3UW2 A;  2H5A X;  3ENC A;  3NA5 A;  4MRQ A;  2DKD A;  5F9C A;  2H4L X;  4IL8 A;  5KL0 A;  3C04 A;  5BMN A;  2DKC A;  1JDY A;  1P5D X;  3PMG A;  2EHP A;  4WXA A;  4QG5 A;  3I3W A;  3PDK A;  2F7L A;  1WQA A; 
#chains in the Genus database with same CATH topology
 2JPI A;  4HJH A;  1N3A A;  1QNC A;  1C4G A;  1TBP A;  3F10 A;  2NOH A;  1LWW A;  4D7R A;  5EPC A;  3IH7 A;  1LWY A;  3OLP A;  4ROC B;  2HL8 A;  2HKP A;  2D0C A;  1TBA B;  1TUO A;  2Y8Q A;  3I0X A;  3D4V A;  1N39 A;  2HZM A;  2DKA A;  1C9B B;  3TE5 A;  5HSH A;  2OOX A;  5JN5 A;  2FKM X;  1K2Y X;  3OSE A;  1VOK A;  1K35 A;  3T4N A;  1N3C A;  1YQM A;  3CVS A;  3OSM A;  1M3Q A;  3C04 A;  1YTB A;  1VTL E;  2DKC A;  1JDY A;  3I0W A;  1PVS A;  2YH5 A;  2F7L A;  3I3W A;  1QNB A;  1C47 A;  4WX8 A;  1PCZ A;  3ULX A;  3CVT A;  1KY6 A;  2NVM A;  5AN4 A;  4B0A A;  1EUV A;  1QTP A;  3ASM A;  3EIK A;  4CFF A;  2QLV A;  2VJ0 A;  2YA3 A;  3EAY A;  2EIU A;  2QRC A;  2I5W A;  2O3O A;  1NH2 A;  1AIS A;  3OST A;  3D7Q A;  3HS8 A;  3BKQ X;  3DPT A;  3H1Z A;  1DIZ A;  2JHN A;  1QN8 A;  2V8Q A;  2FUV A;  5JMV D;  2XHI A;  4ROE B;  3CW7 A;  2NWV A;  1PCM X;  3UW2 A;  2H5A X;  3ENC A;  1QN9 A;  4D7Q A;  2DKD A;  2MZ8 A;  3OGD A;  1QNE A;  2NOL A;  3CWA A;  4ROD B;  3VN5 A;  1JFI C;  2FGT A;  1QN3 A;  3OH6 A;  1WQA A;  2HZS A;  2NOB A;  4EAK A;  1KYU A;  1NVP A;  4BJU A;  2IV9 A;  4EAL A;  1VKL A;  2JOI A;  3RSM A;  2PWW A;  2R5X A;  1LXT A;  4EAG A;  1KFI A;  1WJW A;  1TGH A;  2OOY A;  1P5G X;  1W80 A;  4WZS D;  2Z0F A;  4EJZ A;  4C7P A;  3ENO C;  1KO9 A;  1R4X A;  1T6A A;  5IYB P;  1QTS A;  5IYC P;  1QN4 A;  1QN7 A;  1CDW A;  1E42 A;  3RPJ A;  1NGM A;  4MRQ A;  1EBM A;  1QN6 A;  3OH9 A;  5F9C A;  1RM1 A;  2H4L X;  4IL8 A;  5KL0 A;  1M5Q 1;  1MP9 A;  2ZFD B;  1VTO A;  1P5D X;  1V5S A;  3PMG A;  1B9K A;  4QG5 A;  3PDK A;  1YQK A;  4EAJ A;  1YTF A;  3KRM A;  1KYF A;  4EAI A;  2NOF A;  4DUL A;  1XSZ A;  1KYD A;  1QN5 A;  3HS9 A;  2D0B A;  3CWT A;  1HU0 A;  3CWU A;  1VOL B;  1UL7 A;  4EJY A;  1J3M A;  2G30 A;  1M3H A;  2QRD A;  2NLV A;  3F0Z A;  3DPU A;  2V9J A;  4PY5 A;  2EHB D;  2JHJ A;  5BMP A;  2QR1 A;  1PCJ X;  1PZD A;  2D0A A;  2LAE A;  3OC3 C;  1QNA A;  2HL9 A;  1KFQ A;  1KY7 A;  3OCI A;  2FKF A;  4TPS A;  3SNS A;  2NOI A;  2V92 A;  4I8O A;  1YQR A;  1LWV A;  2Y8L A;  2NOZ A;  1UT4 A;  2NOE A;  3TDH A;  1FN7 A;  3CWS A;  3NA5 A;  2Z8U A;  5IYD P;  2MJ7 A;  1UT7 A;  5BMN A;  3KTU A;  1Q9U A;  1MPG A;  2QRE A;  1D3U A;  2EHP A;  4WXA A;  3N89 A;  1YQL A;  4Q11 A;  2IV8 A; 
#chains in the Genus database with same CATH homology
 2JPI A;  1C47 A;  4WX8 A;  4HJH A;  1C4G A;  4BJU A;  5EPC A;  1VKL A;  3RSM A;  3OLP A;  2EIU A;  5BMP A;  1LXT A;  1TUO A;  1PCJ X;  1KFI A;  1WJW A;  2DKA A;  1P5G X;  5HSH A;  1KFQ A;  2Z0F A;  3BKQ X;  5JN5 A;  2FKF A;  2FKM X;  3ENO C;  1K2Y X;  2FUV A;  1K35 A;  5JMV D;  1PCM X;  3UW2 A;  2H5A X;  3ENC A;  3NA5 A;  4MRQ A;  2DKD A;  5F9C A;  2H4L X;  4IL8 A;  5KL0 A;  3C04 A;  5BMN A;  2DKC A;  1JDY A;  1P5D X;  3PMG A;  2EHP A;  4WXA A;  4QG5 A;  3I3W A;  3PDK A;  2F7L A;  1WQA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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