1P8MA

Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase i.
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
314
structure length
314
Chain Sequence
KPIEIIGAPFSKGQPRGGVEKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTEINTPLTTSSGNLHGQPVAFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTKREGNHKPETDYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase 1
publication title Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase I.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 114
structure length 314
sequence length 314
chains with identical sequence B, C
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1p8mA00
4RHLA 4FCIA 4Q3PA 4Q42A 4GSZA 1RLAA 2PHAA 5HJAA 1TBLA 2A0MA 2PLLA 4Q3QA 3E8ZA 1T4PA 3M1RA 4I06A 4IU4A 1XFKA 2EF5A 1P8SA 1T4TA 4IE3A 5CEVA 4ITYA 4GSMA 3E6VA 4Q3TA 4Q3VA 4HWWA 3GMZA 4IXVA 2PHOA 4MYKA 4HZEA 3E9BA 1P8QA 2CEVA 4IU0A 3NIPA 4IU5A 1P8PA 3GN0A 3CEVA 4RHQA 2EF4A 3TF3A 4DZ4A 1P8NA 1TBHA 1T5FA 2ZAVA 4GWCA 4HXQA 4RHMA 3PZLA 1P8MA 1HQ5A 1T4SA 3NIQA 4MYFA 3LHLA 4IXUA 1T5GA 4Q40A 1HQXA 4G3HA 3F80A 3MJLA 4MYLA 1WOHA 4Q3SA 2AEBA 3LP7A 3TH7A 4RHIA 4IE2A 4GSVA 4CEVA 3NIOA 1WOIA 3KV2A 3RLAA 3THJA 4RHJA 1ZPGA 4Q3RA 1HQGA 1PQ3A 2EIVA 4GWDA 3SL1A 1HQHA 4MXRA 3MFVA 1HQFA 1P8OA 3MFWA 3LP4A 4RHKA 1WVBA 1D3VA 3SKKA 3DJ8A 3SJTA 4Q3UA 4IU1A 4FCKA 1TBJA 1GQ6A 1T4RA 1WVAA 4Q3RC 4RLAA 3THEA 1WOGA 5HJ9A 1P8RA 3E8QA 2RLAA 3E6KA 3MMRA 3SL0A 4IE1A 5RLAA 1GQ7A 1CEVA 4MYNA 4Q41A 1TA1A 1R1OA 1ZPEA 3THHA
chains in the Genus database with same CATH superfamily
3MZ3A 2V5WA 4FCIA 4RHLA 4Q3PA 4Q42A 1ZZ0A 3F0RA 4CBTA 4GSZA 4ZUNA 5IWGA 5FUEA 1RLAA 2PHAA 3EW8A 5EF7A 1TBLA 5HJAA 2A0MA 2VQOA 4QA3A 4LY1A 5G11A 2PLLA 4Q3QA 3E8ZA 4QA4A 5EENA 3MZ6A 3SFFA 1T4PA 2VQWG 3M1RA 2V5XA 3Q9CA 4I06A 4QA7A 4IU4A 1ZZ1A 5D1CA 5DC5A 5G12A 5DC6A 1XFKA 2EF5A 4RN0A 1P8SA 5LI3A 3MENA 4QA6A 5G0YA 1T4TA 3F06A 5THTA 4IE3A 5IX0A 5EEKA 1C3SA 3ZNSA 5CEVA 4ITYA 1ZZ3A 4GSMA 3E6VA 4Q3TA 1W22A 1C3PA 4Q3VA 4HWWA 3EWFA 4ZUOA 2GH6A 3GMZA 5EFBD 4IXVA 5G17A 2PHOA 4MYKA 4ZUMA 4HZEA 3E9BA 4BZ6A 3SFHA 4ZUPA 1P8QA 2CEVA 3Q9BA 3C0ZA 4IU0A 3NIPA 4IU5A 1P8PA 1T64A 3GN0A 3CEVA 3RQDA 4RHQA 3ZNRA 2EF4A 4BZ9A 5G0IA 4DZ4A 5G1CA 5FCWA 3TF3A 1P8NA 1TBHA 5EEIA 5EFGA 5A2SA 5JI5A 3F07A 1T5FA 4RN2A 2ZAVA 4ZUQA 4GWCA 5EF8A 4HXQA 4RHMA 5EEMA 5G0JA 3PZLA 1P8MA 5THSA 3EZTA 1HQ5A 1T4SA 3NIQA 4MYFA 2VCGA 3C0YA 3C10A 4CQFA 3MZ7A 5DC8A 5G1AA 3LHLA 2VQJA 5EFNA 4IXUA 4LXZA 5D1DA 1T5GA 5EFHA 4Q40A 5G0HA 1HQXA 5G3WA 4G3HA 3F80A 3MJLA 4MYLA 4QA2A 4A69A 4CBYA 1WOHA 4Q3SA 2AEBA 5G10A 3LP7A 3TH7A 5G0XA 4RHIA 5THUA 4IE2A 5EFJD 5THVA 3Q9FA 4GSVA 4QA5A 4CEVA 4QA0A 3NIOA 5EFKB 1WOIA 4QA1A 3KV2A 3Q9EA 4BZ8A 3RLAA 3THJA 4ZURA 4RHJA 1ZPGA 3MAXA 1HQGA 4Q3RA 4BZ5A 5BWZA 1PQ3A 2EIVA 4GWDA 3SL1A 5ICNB 1HQHA 5D1BA 4MXRA 3MFVA 1HQFA 1P8OA 3MFWA 3LP4A 4RN1A 4RHKA 1WVBA 3EZPA 5EEFA 1D3VA 3SKKA 1C3RA 4BKXB 2VQVA 3DJ8A 3SJTA 4Q3UA 5DC7A 2VQMA 4IU1A 4FCKA 1TBJA 1GQ6A 1T4RA 1WVAA 4Q3RC 2VQQA 4RLAA 3THEA 1WOGA 3MZ4A 5HJ9A 1P8RA 5G0GA 4BZ7A 3E8QA 2RLAA 3E6KA 1T67A 3MMRA 1VKGA 3SL0A 1T69A 4IE1A 5G13A 5RLAA 1GQ7A 1CEVA 4MYNA 4Q41A 1TA1A 5G1BA 1R1OA 1ZPEA 3THHA
chains in the Genus database with same CATH topology
4RHLA 4FCIA 4Q3PA 4Q42A 4GSZA 1RLAA 2PHAA 5HJAA 1TBLA 2A0MA 2PLLA 4Q3QA 3E8ZA 1T4PA 3M1RA 4I06A 4IU4A 1XFKA 2EF5A 1P8SA 1T4TA 4IE3A 5CEVA 4ITYA 4GSMA 3E6VA 4Q3TA 4Q3VA 4HWWA 3GMZA 4IXVA 2PHOA 4MYKA 4HZEA 3E9BA 1P8QA 2CEVA 4IU0A 3NIPA 4IU5A 1P8PA 3GN0A 3CEVA 4RHQA 2EF4A 3TF3A 4DZ4A 1P8NA 1TBHA 1T5FA 2ZAVA 4GWCA 4HXQA 4RHMA 3PZLA 1P8MA 1HQ5A 1T4SA 3NIQA 4MYFA 3LHLA 4IXUA 1T5GA 4Q40A 1HQXA 4G3HA 3F80A 3MJLA 4MYLA 1WOHA 4Q3SA 2AEBA 3LP7A 3TH7A 4RHIA 4IE2A 4GSVA 4CEVA 3NIOA 1WOIA 3KV2A 3RLAA 3THJA 4RHJA 1ZPGA 4Q3RA 1HQGA 1PQ3A 2EIVA 4GWDA 3SL1A 1HQHA 4MXRA 3MFVA 1HQFA 1P8OA 3MFWA 3LP4A 4RHKA 1WVBA 1D3VA 3SKKA 3DJ8A 3SJTA 4Q3UA 4IU1A 4FCKA 1TBJA 1GQ6A 1T4RA 1WVAA 4Q3RC 4RLAA 3THEA 1WOGA 5HJ9A 1P8RA 3E8QA 2RLAA 3E6KA 3MMRA 3SL0A 4IE1A 5RLAA 1GQ7A 1CEVA 4MYNA 4Q41A 1TA1A 1R1OA 1ZPEA 3THHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RHL A;  4FCI A;  4Q3P A;  4Q42 A;  4GSZ A;  1RLA A;  2PHA A;  5HJA A;  1TBL A;  2A0M A;  2PLL A;  4Q3Q A;  3E8Z A;  1T4P A;  3M1R A;  4I06 A;  4IU4 A;  1XFK A;  2EF5 A;  1P8S A;  1T4T A;  4IE3 A;  5CEV A;  4ITY A;  4GSM A;  3E6V A;  4Q3T A;  4Q3V A;  4HWW A;  3GMZ A;  4IXV A;  2PHO A;  4MYK A;  4HZE A;  3E9B A;  1P8Q A;  2CEV A;  4IU0 A;  3NIP A;  4IU5 A;  1P8P A;  3GN0 A;  3CEV A;  4RHQ A;  2EF4 A;  3TF3 A;  4DZ4 A;  1P8N A;  1TBH A;  1T5F A;  2ZAV A;  4GWC A;  4HXQ A;  4RHM A;  3PZL A;  1P8M A;  1HQ5 A;  1T4S A;  3NIQ A;  4MYF A;  3LHL A;  4IXU A;  1T5G A;  4Q40 A;  1HQX A;  4G3H A;  3F80 A;  3MJL A;  4MYL A;  1WOH A;  4Q3S A;  2AEB A;  3LP7 A;  3TH7 A;  4RHI A;  4IE2 A;  4GSV A;  4CEV A;  3NIO A;  1WOI A;  3KV2 A;  3RLA A;  3THJ A;  4RHJ A;  1ZPG A;  4Q3R A;  1HQG A;  1PQ3 A;  2EIV A;  4GWD A;  3SL1 A;  1HQH A;  4MXR A;  3MFV A;  1HQF A;  1P8O A;  3MFW A;  3LP4 A;  4RHK A;  1WVB A;  1D3V A;  3SKK A;  3DJ8 A;  3SJT A;  4Q3U A;  4IU1 A;  4FCK A;  1TBJ A;  1GQ6 A;  1T4R A;  1WVA A;  4Q3R C;  4RLA A;  3THE A;  1WOG A;  5HJ9 A;  1P8R A;  3E8Q A;  2RLA A;  3E6K A;  3MMR A;  3SL0 A;  4IE1 A;  5RLA A;  1GQ7 A;  1CEV A;  4MYN A;  4Q41 A;  1TA1 A;  1R1O A;  1ZPE A;  3THH A; 
#chains in the Genus database with same CATH topology
 3MZ3 A;  2V5W A;  4FCI A;  4RHL A;  4Q3P A;  4Q42 A;  1ZZ0 A;  3F0R A;  4CBT A;  4GSZ A;  4ZUN A;  5IWG A;  5FUE A;  1RLA A;  2PHA A;  3EW8 A;  5EF7 A;  1TBL A;  5HJA A;  2A0M A;  2VQO A;  4QA3 A;  4LY1 A;  5G11 A;  2PLL A;  4Q3Q A;  3E8Z A;  4QA4 A;  5EEN A;  3MZ6 A;  3SFF A;  1T4P A;  2VQW G;  3M1R A;  2V5X A;  3Q9C A;  4I06 A;  4QA7 A;  4IU4 A;  1ZZ1 A;  5D1C A;  5DC5 A;  5G12 A;  5DC6 A;  1XFK A;  2EF5 A;  4RN0 A;  1P8S A;  5LI3 A;  3MEN A;  4QA6 A;  5G0Y A;  1T4T A;  3F06 A;  5THT A;  4IE3 A;  5IX0 A;  5EEK A;  1C3S A;  3ZNS A;  5CEV A;  4ITY A;  1ZZ3 A;  4GSM A;  3E6V A;  4Q3T A;  1W22 A;  1C3P A;  4Q3V A;  4HWW A;  3EWF A;  4ZUO A;  2GH6 A;  3GMZ A;  5EFB D;  4IXV A;  5G17 A;  2PHO A;  4MYK A;  4ZUM A;  4HZE A;  3E9B A;  4BZ6 A;  3SFH A;  4ZUP A;  1P8Q A;  2CEV A;  3Q9B A;  3C0Z A;  4IU0 A;  3NIP A;  4IU5 A;  1P8P A;  1T64 A;  3GN0 A;  3CEV A;  3RQD A;  4RHQ A;  3ZNR A;  2EF4 A;  4BZ9 A;  5G0I A;  4DZ4 A;  5G1C A;  5FCW A;  3TF3 A;  1P8N A;  1TBH A;  5EEI A;  5EFG A;  5A2S A;  5JI5 A;  3F07 A;  1T5F A;  4RN2 A;  2ZAV A;  4ZUQ A;  4GWC A;  5EF8 A;  4HXQ A;  4RHM A;  5EEM A;  5G0J A;  3PZL A;  1P8M A;  5THS A;  3EZT A;  1HQ5 A;  1T4S A;  3NIQ A;  4MYF A;  2VCG A;  3C0Y A;  3C10 A;  4CQF A;  3MZ7 A;  5DC8 A;  5G1A A;  3LHL A;  2VQJ A;  5EFN A;  4IXU A;  4LXZ A;  5D1D A;  1T5G A;  5EFH A;  4Q40 A;  5G0H A;  1HQX A;  5G3W A;  4G3H A;  3F80 A;  3MJL A;  4MYL A;  4QA2 A;  4A69 A;  4CBY A;  1WOH A;  4Q3S A;  2AEB A;  5G10 A;  3LP7 A;  3TH7 A;  5G0X A;  4RHI A;  5THU A;  4IE2 A;  5EFJ D;  5THV A;  3Q9F A;  4GSV A;  4QA5 A;  4CEV A;  4QA0 A;  3NIO A;  5EFK B;  1WOI A;  4QA1 A;  3KV2 A;  3Q9E A;  4BZ8 A;  3RLA A;  3THJ A;  4ZUR A;  4RHJ A;  1ZPG A;  3MAX A;  1HQG A;  4Q3R A;  4BZ5 A;  5BWZ A;  1PQ3 A;  2EIV A;  4GWD A;  3SL1 A;  5ICN B;  1HQH A;  5D1B A;  4MXR A;  3MFV A;  1HQF A;  1P8O A;  3MFW A;  3LP4 A;  4RN1 A;  4RHK A;  1WVB A;  3EZP A;  5EEF A;  1D3V A;  3SKK A;  1C3R A;  4BKX B;  2VQV A;  3DJ8 A;  3SJT A;  4Q3U A;  5DC7 A;  2VQM A;  4IU1 A;  4FCK A;  1TBJ A;  1GQ6 A;  1T4R A;  1WVA A;  4Q3R C;  2VQQ A;  4RLA A;  3THE A;  1WOG A;  3MZ4 A;  5HJ9 A;  1P8R A;  5G0G A;  4BZ7 A;  3E8Q A;  2RLA A;  3E6K A;  1T67 A;  3MMR A;  1VKG A;  3SL0 A;  1T69 A;  4IE1 A;  5G13 A;  5RLA A;  1GQ7 A;  1CEV A;  4MYN A;  4Q41 A;  1TA1 A;  5G1B A;  1R1O A;  1ZPE A;  3THH A; 
#chains in the Genus database with same CATH homology
 4RHL A;  4FCI A;  4Q3P A;  4Q42 A;  4GSZ A;  1RLA A;  2PHA A;  5HJA A;  1TBL A;  2A0M A;  2PLL A;  4Q3Q A;  3E8Z A;  1T4P A;  3M1R A;  4I06 A;  4IU4 A;  1XFK A;  2EF5 A;  1P8S A;  1T4T A;  4IE3 A;  5CEV A;  4ITY A;  4GSM A;  3E6V A;  4Q3T A;  4Q3V A;  4HWW A;  3GMZ A;  4IXV A;  2PHO A;  4MYK A;  4HZE A;  3E9B A;  1P8Q A;  2CEV A;  4IU0 A;  3NIP A;  4IU5 A;  1P8P A;  3GN0 A;  3CEV A;  4RHQ A;  2EF4 A;  3TF3 A;  4DZ4 A;  1P8N A;  1TBH A;  1T5F A;  2ZAV A;  4GWC A;  4HXQ A;  4RHM A;  3PZL A;  1P8M A;  1HQ5 A;  1T4S A;  3NIQ A;  4MYF A;  3LHL A;  4IXU A;  1T5G A;  4Q40 A;  1HQX A;  4G3H A;  3F80 A;  3MJL A;  4MYL A;  1WOH A;  4Q3S A;  2AEB A;  3LP7 A;  3TH7 A;  4RHI A;  4IE2 A;  4GSV A;  4CEV A;  3NIO A;  1WOI A;  3KV2 A;  3RLA A;  3THJ A;  4RHJ A;  1ZPG A;  4Q3R A;  1HQG A;  1PQ3 A;  2EIV A;  4GWD A;  3SL1 A;  1HQH A;  4MXR A;  3MFV A;  1HQF A;  1P8O A;  3MFW A;  3LP4 A;  4RHK A;  1WVB A;  1D3V A;  3SKK A;  3DJ8 A;  3SJT A;  4Q3U A;  4IU1 A;  4FCK A;  1TBJ A;  1GQ6 A;  1T4R A;  1WVA A;  4Q3R C;  4RLA A;  3THE A;  1WOG A;  5HJ9 A;  1P8R A;  3E8Q A;  2RLA A;  3E6K A;  3MMR A;  3SL0 A;  4IE1 A;  5RLA A;  1GQ7 A;  1CEV A;  4MYN A;  4Q41 A;  1TA1 A;  1R1O A;  1ZPE A;  3THH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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