1P8OA

Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase i.
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
314
structure length
314
Chain Sequence
KPIEIIGAPFSKGQPRGGVEKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTNINTPLTTSSGNLHGQPVAFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTKREGNHKPETDYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase 1
publication title Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase I
pubmed doi rcsb
source organism Rattus norvegicus
total genus 111
structure length 314
sequence length 314
chains with identical sequence B, C
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1p8oA00
4MYLA 3NIPA 4IU4A 3DJ8A 3NIOA 3GN0A 3PZLA 3E8ZA 4IU5A 4RHLA 4IE2A 4HXQA 1ZPGA 2PHAA 1GQ7A 3M1RA 4Q3PA 4Q3UA 1TA1A 1HQFA 1P8OA 2AEBA 4Q3TA 3E6VA 1P8RA 2EF4A 4Q3RC 3TF3A 4FCIA 3MFVA 4IU0A 1HQHA 4RHKA 1T4SA 1WOIA 1P8PA 1TBLA 1P8SA 4HWWA 4RHIA 1CEVA 1HQ5A 4IE1A 4Q3QA 2PHOA 1WOGA 4RHMA 2RLAA 4MYNA 3SJTA 4HZEA 3THEA 4FCKA 4Q40A 1P8NA 3SL0A 4RLAA 1PQ3A 1T4TA 5HJAA 1T4RA 3RLAA 4Q42A 4GWDA 1GQ6A 4GSZA 4MYKA 4MXRA 1T5GA 4GWCA 2ZAVA 3THJA 2A0MA 1ZPEA 3MMRA 3KV2A 4GSMA 5RLAA 3E8QA 1HQXA 4Q3SA 4G3HA 4I06A 1WVBA 1XFKA 4RHQA 2CEVA 1WOHA 1RLAA 1TBJA 4Q3VA 3SL1A 4Q41A 4IXVA 3TH7A 4CEVA 3NIQA 3LP7A 4IU1A 1R1OA 5HJ9A 3SKKA 3F80A 4Q3RA 3GMZA 1TBHA 3E9BA 1T4PA 4IXUA 3LHLA 3E6KA 2EF5A 4ITYA 1HQGA 4IE3A 2EIVA 3MFWA 1D3VA 3LP4A 3MJLA 5CEVA 4RHJA 3CEVA 1T5FA 4MYFA 2PLLA 1WVAA 1P8MA 4GSVA 3THHA 1P8QA 4DZ4A
chains in the Genus database with same CATH superfamily
3SFFA 4ZUQA 5G1AA 5EFHA 5EFJD 4MYLA 5DC8A 3NIPA 3Q9CA 1ZZ0A 4IU4A 5EFBD 1W22A 2V5WA 2VQJA 3DJ8A 5G3WA 1VKGA 3MZ6A 3NIOA 3GN0A 5G1BA 3PZLA 3E8ZA 4IU5A 4RHLA 4IE2A 4HXQA 1ZPGA 2PHAA 1GQ7A 3M1RA 4Q3PA 4Q3UA 1TA1A 4RN2A 4BZ6A 1HQFA 1P8OA 2AEBA 4Q3TA 3E6VA 1P8RA 2EF4A 2VQMA 4Q3RC 3C0YA 4FCIA 2VQQA 3TF3A 3MFVA 4IU0A 5D1DA 3MZ4A 1HQHA 4RHKA 4QA2A 4LXZA 1T4SA 1WOIA 1P8PA 1TBLA 1P8SA 4HWWA 2VQWG 4RHIA 1CEVA 1HQ5A 3EW8A 4IE1A 5THUA 4Q3QA 2PHOA 5G13A 5G1CA 3MZ3A 4RN0A 5G0GA 1WOGA 5G17A 4QA1A 4RHMA 2RLAA 4MYNA 4BZ7A 3Q9BA 3F07A 3SJTA 4HZEA 3THEA 3EWFA 5DC6A 3RQDA 1C3PA 4FCKA 4Q40A 1P8NA 3SL0A 4RLAA 5G11A 1PQ3A 1T4TA 5HJAA 1T4RA 3RLAA 5IX0A 4Q42A 4GWDA 4QA4A 5EEMA 4QA6A 4A69A 1GQ6A 1T69A 4GSZA 5G0YA 5THSA 5ICNB 5G0IA 4MYKA 5JI5A 4MXRA 4BZ9A 1T5GA 3Q9EA 3EZTA 4GWCA 2ZAVA 3THJA 2A0MA 4ZUOA 5LI3A 5DC5A 4CBYA 1ZPEA 3MMRA 3KV2A 1ZZ3A 4GSMA 5RLAA 3E8QA 4QA5A 4BKXB 1HQXA 4Q3SA 2VCGA 1C3SA 5G0JA 4G3HA 4BZ5A 4I06A 1WVBA 1XFKA 4RHQA 2CEVA 5EF8A 1WOHA 1RLAA 2VQVA 1TBJA 5EFNA 5THTA 4LY1A 4RN1A 3EZPA 4Q3VA 3MAXA 5D1BA 3SL1A 4Q41A 3Q9FA 4IXVA 3MZ7A 3MENA 3NIQA 3LP7A 3TH7A 4IU1A 5FUEA 4CEVA 1R1OA 5HJ9A 4ZUNA 3SKKA 3F80A 4QA0A 5G0HA 4Q3RA 4CQFA 2V5XA 2GH6A 3C10A 3C0ZA 3GMZA 5EFKB 1TBHA 5G12A 3ZNSA 3SFHA 3E9BA 1T4PA 4ZUMA 3F0RA 5THVA 4CBTA 4IXUA 3LHLA 5A2SA 3E6KA 1T64A 5D1CA 4ZURA 2EF5A 4ITYA 5EENA 1HQGA 4IE3A 5BWZA 4QA7A 4BZ8A 5EEFA 2EIVA 3MFWA 5EF7A 5DC7A 1D3VA 5G0XA 1C3RA 1ZZ1A 3LP4A 3MJLA 4QA3A 3ZNRA 5CEVA 1T67A 4RHJA 5EEIA 5IWGA 3CEVA 5G10A 1T5FA 4MYFA 2VQOA 2PLLA 5EEKA 5FCWA 5EFGA 1WVAA 1P8MA 4GSVA 3F06A 1P8QA 4ZUPA 3THHA 4DZ4A
chains in the Genus database with same CATH topology
4MYLA 3NIPA 4IU4A 3DJ8A 3NIOA 3GN0A 3PZLA 3E8ZA 4IU5A 4RHLA 4IE2A 4HXQA 1ZPGA 2PHAA 1GQ7A 3M1RA 4Q3PA 4Q3UA 1TA1A 1HQFA 1P8OA 2AEBA 4Q3TA 3E6VA 1P8RA 2EF4A 4Q3RC 3TF3A 4FCIA 3MFVA 4IU0A 1HQHA 4RHKA 1T4SA 1WOIA 1P8PA 1TBLA 1P8SA 4HWWA 4RHIA 1CEVA 1HQ5A 4IE1A 4Q3QA 2PHOA 1WOGA 4RHMA 2RLAA 4MYNA 3SJTA 4HZEA 3THEA 4FCKA 4Q40A 1P8NA 3SL0A 4RLAA 1PQ3A 1T4TA 5HJAA 1T4RA 3RLAA 4Q42A 4GWDA 1GQ6A 4GSZA 4MYKA 4MXRA 1T5GA 4GWCA 2ZAVA 3THJA 2A0MA 1ZPEA 3MMRA 3KV2A 4GSMA 5RLAA 3E8QA 1HQXA 4Q3SA 4G3HA 4I06A 1WVBA 1XFKA 4RHQA 2CEVA 1WOHA 1RLAA 1TBJA 4Q3VA 3SL1A 4Q41A 4IXVA 3TH7A 4CEVA 3NIQA 3LP7A 4IU1A 1R1OA 5HJ9A 3SKKA 3F80A 4Q3RA 3GMZA 1TBHA 3E9BA 1T4PA 4IXUA 3LHLA 3E6KA 2EF5A 4ITYA 1HQGA 4IE3A 2EIVA 3MFWA 1D3VA 3LP4A 3MJLA 5CEVA 4RHJA 3CEVA 1T5FA 4MYFA 2PLLA 1WVAA 1P8MA 4GSVA 3THHA 1P8QA 4DZ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MYL A;  3NIP A;  4IU4 A;  3DJ8 A;  3NIO A;  3GN0 A;  3PZL A;  3E8Z A;  4IU5 A;  4RHL A;  4IE2 A;  4HXQ A;  1ZPG A;  2PHA A;  1GQ7 A;  3M1R A;  4Q3P A;  4Q3U A;  1TA1 A;  1HQF A;  1P8O A;  2AEB A;  4Q3T A;  3E6V A;  1P8R A;  2EF4 A;  4Q3R C;  3TF3 A;  4FCI A;  3MFV A;  4IU0 A;  1HQH A;  4RHK A;  1T4S A;  1WOI A;  1P8P A;  1TBL A;  1P8S A;  4HWW A;  4RHI A;  1CEV A;  1HQ5 A;  4IE1 A;  4Q3Q A;  2PHO A;  1WOG A;  4RHM A;  2RLA A;  4MYN A;  3SJT A;  4HZE A;  3THE A;  4FCK A;  4Q40 A;  1P8N A;  3SL0 A;  4RLA A;  1PQ3 A;  1T4T A;  5HJA A;  1T4R A;  3RLA A;  4Q42 A;  4GWD A;  1GQ6 A;  4GSZ A;  4MYK A;  4MXR A;  1T5G A;  4GWC A;  2ZAV A;  3THJ A;  2A0M A;  1ZPE A;  3MMR A;  3KV2 A;  4GSM A;  5RLA A;  3E8Q A;  1HQX A;  4Q3S A;  4G3H A;  4I06 A;  1WVB A;  1XFK A;  4RHQ A;  2CEV A;  1WOH A;  1RLA A;  1TBJ A;  4Q3V A;  3SL1 A;  4Q41 A;  4IXV A;  3TH7 A;  4CEV A;  3NIQ A;  3LP7 A;  4IU1 A;  1R1O A;  5HJ9 A;  3SKK A;  3F80 A;  4Q3R A;  3GMZ A;  1TBH A;  3E9B A;  1T4P A;  4IXU A;  3LHL A;  3E6K A;  2EF5 A;  4ITY A;  1HQG A;  4IE3 A;  2EIV A;  3MFW A;  1D3V A;  3LP4 A;  3MJL A;  5CEV A;  4RHJ A;  3CEV A;  1T5F A;  4MYF A;  2PLL A;  1WVA A;  1P8M A;  4GSV A;  3THH A;  1P8Q A;  4DZ4 A; 
#chains in the Genus database with same CATH topology
 3SFF A;  4ZUQ A;  5G1A A;  5EFH A;  5EFJ D;  4MYL A;  5DC8 A;  3NIP A;  3Q9C A;  1ZZ0 A;  4IU4 A;  5EFB D;  1W22 A;  2V5W A;  2VQJ A;  3DJ8 A;  5G3W A;  1VKG A;  3MZ6 A;  3NIO A;  3GN0 A;  5G1B A;  3PZL A;  3E8Z A;  4IU5 A;  4RHL A;  4IE2 A;  4HXQ A;  1ZPG A;  2PHA A;  1GQ7 A;  3M1R A;  4Q3P A;  4Q3U A;  1TA1 A;  4RN2 A;  4BZ6 A;  1HQF A;  1P8O A;  2AEB A;  4Q3T A;  3E6V A;  1P8R A;  2EF4 A;  2VQM A;  4Q3R C;  3C0Y A;  4FCI A;  2VQQ A;  3TF3 A;  3MFV A;  4IU0 A;  5D1D A;  3MZ4 A;  1HQH A;  4RHK A;  4QA2 A;  4LXZ A;  1T4S A;  1WOI A;  1P8P A;  1TBL A;  1P8S A;  4HWW A;  2VQW G;  4RHI A;  1CEV A;  1HQ5 A;  3EW8 A;  4IE1 A;  5THU A;  4Q3Q A;  2PHO A;  5G13 A;  5G1C A;  3MZ3 A;  4RN0 A;  5G0G A;  1WOG A;  5G17 A;  4QA1 A;  4RHM A;  2RLA A;  4MYN A;  4BZ7 A;  3Q9B A;  3F07 A;  3SJT A;  4HZE A;  3THE A;  3EWF A;  5DC6 A;  3RQD A;  1C3P A;  4FCK A;  4Q40 A;  1P8N A;  3SL0 A;  4RLA A;  5G11 A;  1PQ3 A;  1T4T A;  5HJA A;  1T4R A;  3RLA A;  5IX0 A;  4Q42 A;  4GWD A;  4QA4 A;  5EEM A;  4QA6 A;  4A69 A;  1GQ6 A;  1T69 A;  4GSZ A;  5G0Y A;  5THS A;  5ICN B;  5G0I A;  4MYK A;  5JI5 A;  4MXR A;  4BZ9 A;  1T5G A;  3Q9E A;  3EZT A;  4GWC A;  2ZAV A;  3THJ A;  2A0M A;  4ZUO A;  5LI3 A;  5DC5 A;  4CBY A;  1ZPE A;  3MMR A;  3KV2 A;  1ZZ3 A;  4GSM A;  5RLA A;  3E8Q A;  4QA5 A;  4BKX B;  1HQX A;  4Q3S A;  2VCG A;  1C3S A;  5G0J A;  4G3H A;  4BZ5 A;  4I06 A;  1WVB A;  1XFK A;  4RHQ A;  2CEV A;  5EF8 A;  1WOH A;  1RLA A;  2VQV A;  1TBJ A;  5EFN A;  5THT A;  4LY1 A;  4RN1 A;  3EZP A;  4Q3V A;  3MAX A;  5D1B A;  3SL1 A;  4Q41 A;  3Q9F A;  4IXV A;  3MZ7 A;  3MEN A;  3NIQ A;  3LP7 A;  3TH7 A;  4IU1 A;  5FUE A;  4CEV A;  1R1O A;  5HJ9 A;  4ZUN A;  3SKK A;  3F80 A;  4QA0 A;  5G0H A;  4Q3R A;  4CQF A;  2V5X A;  2GH6 A;  3C10 A;  3C0Z A;  3GMZ A;  5EFK B;  1TBH A;  5G12 A;  3ZNS A;  3SFH A;  3E9B A;  1T4P A;  4ZUM A;  3F0R A;  5THV A;  4CBT A;  4IXU A;  3LHL A;  5A2S A;  3E6K A;  1T64 A;  5D1C A;  4ZUR A;  2EF5 A;  4ITY A;  5EEN A;  1HQG A;  4IE3 A;  5BWZ A;  4QA7 A;  4BZ8 A;  5EEF A;  2EIV A;  3MFW A;  5EF7 A;  5DC7 A;  1D3V A;  5G0X A;  1C3R A;  1ZZ1 A;  3LP4 A;  3MJL A;  4QA3 A;  3ZNR A;  5CEV A;  1T67 A;  4RHJ A;  5EEI A;  5IWG A;  3CEV A;  5G10 A;  1T5F A;  4MYF A;  2VQO A;  2PLL A;  5EEK A;  5FCW A;  5EFG A;  1WVA A;  1P8M A;  4GSV A;  3F06 A;  1P8Q A;  4ZUP A;  3THH A;  4DZ4 A; 
#chains in the Genus database with same CATH homology
 4MYL A;  3NIP A;  4IU4 A;  3DJ8 A;  3NIO A;  3GN0 A;  3PZL A;  3E8Z A;  4IU5 A;  4RHL A;  4IE2 A;  4HXQ A;  1ZPG A;  2PHA A;  1GQ7 A;  3M1R A;  4Q3P A;  4Q3U A;  1TA1 A;  1HQF A;  1P8O A;  2AEB A;  4Q3T A;  3E6V A;  1P8R A;  2EF4 A;  4Q3R C;  3TF3 A;  4FCI A;  3MFV A;  4IU0 A;  1HQH A;  4RHK A;  1T4S A;  1WOI A;  1P8P A;  1TBL A;  1P8S A;  4HWW A;  4RHI A;  1CEV A;  1HQ5 A;  4IE1 A;  4Q3Q A;  2PHO A;  1WOG A;  4RHM A;  2RLA A;  4MYN A;  3SJT A;  4HZE A;  3THE A;  4FCK A;  4Q40 A;  1P8N A;  3SL0 A;  4RLA A;  1PQ3 A;  1T4T A;  5HJA A;  1T4R A;  3RLA A;  4Q42 A;  4GWD A;  1GQ6 A;  4GSZ A;  4MYK A;  4MXR A;  1T5G A;  4GWC A;  2ZAV A;  3THJ A;  2A0M A;  1ZPE A;  3MMR A;  3KV2 A;  4GSM A;  5RLA A;  3E8Q A;  1HQX A;  4Q3S A;  4G3H A;  4I06 A;  1WVB A;  1XFK A;  4RHQ A;  2CEV A;  1WOH A;  1RLA A;  1TBJ A;  4Q3V A;  3SL1 A;  4Q41 A;  4IXV A;  3TH7 A;  4CEV A;  3NIQ A;  3LP7 A;  4IU1 A;  1R1O A;  5HJ9 A;  3SKK A;  3F80 A;  4Q3R A;  3GMZ A;  1TBH A;  3E9B A;  1T4P A;  4IXU A;  3LHL A;  3E6K A;  2EF5 A;  4ITY A;  1HQG A;  4IE3 A;  2EIV A;  3MFW A;  1D3V A;  3LP4 A;  3MJL A;  5CEV A;  4RHJ A;  3CEV A;  1T5F A;  4MYF A;  2PLL A;  1WVA A;  1P8M A;  4GSV A;  3THH A;  1P8Q A;  4DZ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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