1P8PA

Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase i.
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
314
structure length
314
Chain Sequence
KPIEIIGAPFSKGQPRGGVEKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDNSMAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLHGQPVAFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTKREGNHKPETDYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase 1
publication title Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase I
pubmed doi rcsb
source organism Rattus norvegicus
total genus 105
structure length 314
sequence length 314
chains with identical sequence B, C
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1p8pA00
1T4SA 4Q3VA 4Q41A 3NIPA 4GWCA 4RHLA 3KV2A 3E6VA 2EF4A 1CEVA 1TBHA 4Q40A 5CEVA 3E8QA 4MYKA 3MJLA 4FCIA 1P8MA 1P8OA 2AEBA 4RHJA 1P8SA 4IXUA 3TF3A 1P8NA 4CEVA 1GQ6A 1WOIA 4RHKA 4RHIA 1XFKA 4IU1A 1ZPGA 3NIOA 1GQ7A 4DZ4A 2ZAVA 4RHMA 1WOGA 1TA1A 3PZLA 3MFWA 3CEVA 2PHOA 3E8ZA 4Q3SA 4RHQA 3SJTA 3LP7A 4G3HA 5RLAA 3F80A 4HXQA 3DJ8A 4HWWA 4MYFA 4RLAA 2EF5A 1WOHA 4Q3PA 4MYNA 4GSMA 4IE2A 4Q42A 3THEA 1D3VA 3GMZA 1T4TA 1T5FA 4MXRA 3RLAA 1R1OA 3MMRA 4GWDA 1T4PA 4Q3QA 4IE1A 1PQ3A 5HJAA 3LHLA 4Q3UA 2CEVA 4GSZA 3GN0A 4Q3TA 4GSVA 4I06A 1T5GA 4IXVA 2RLAA 3M1RA 3SL0A 1WVAA 1HQGA 4HZEA 2PHAA 2A0MA 4Q3RA 3E6KA 3THJA 3SL1A 4IU0A 1HQ5A 4MYLA 3SKKA 1WVBA 1HQFA 1HQHA 1P8RA 3MFVA 1TBJA 2EIVA 4Q3RC 1RLAA 3NIQA 2PLLA 3THHA 5HJ9A 4FCKA 4ITYA 3LP4A 4IU4A 1P8PA 1HQXA 4IE3A 1P8QA 1T4RA 1ZPEA 3TH7A 3E9BA 4IU5A 1TBLA
chains in the Genus database with same CATH superfamily
1T4SA 4Q3VA 3F07A 4QA5A 4Q41A 5EEKA 4RN0A 3NIPA 4QA4A 4GWCA 4RHLA 3SFFA 5G0JA 2VQOA 3KV2A 3E6VA 3E9BA 2EF4A 5DC8A 5LI3A 4RN2A 1CEVA 1TBHA 4Q40A 5CEVA 3E8QA 4BZ8A 4MYKA 5ICNB 3MJLA 5EFHA 4FCIA 4CBYA 1P8MA 1P8OA 2AEBA 4RHJA 5D1DA 5G0HA 5BWZA 1P8SA 4IXUA 4RN1A 1ZZ3A 3TF3A 4BZ6A 4ZURA 1P8NA 4CQFA 3C10A 5EEFA 5D1BA 4CEVA 1GQ6A 1WOIA 4RHKA 4BKXB 4RHIA 1XFKA 1C3SA 4IU1A 1ZPGA 3RQDA 3MZ7A 3NIOA 3EZTA 5DC5A 4QA3A 4DZ4A 2ZAVA 4RHMA 1WOGA 1TA1A 3PZLA 5EFGA 5G0GA 3MFWA 5DC6A 3F06A 3CEVA 2PHOA 3E8ZA 5EFBD 4BZ5A 4ZUPA 5THSA 4Q3SA 5THUA 4RHQA 5EFKB 4BZ7A 3SJTA 3LP7A 4QA7A 5G11A 4G3HA 3MENA 5RLAA 4A69A 3F80A 4HXQA 4ZUQA 3Q9FA 5G1AA 5G13A 3MZ4A 3DJ8A 2VQVA 2VQWG 4QA1A 5EF7A 4HWWA 4MYFA 4RLAA 2EF5A 1WOHA 5FUEA 4Q3PA 4MYNA 3F0RA 4GSMA 4IE2A 5G0IA 4Q42A 1C3PA 3THEA 1D3VA 3GMZA 3MAXA 5EF8A 1T4TA 5G3WA 4LY1A 1T5FA 4MXRA 3RLAA 5G1BA 1R1OA 3MMRA 5G0YA 5G0XA 4ZUMA 4GWDA 1T4PA 4Q3QA 4IE1A 4LXZA 1PQ3A 5IWGA 5G17A 3LHLA 4Q3UA 3EWFA 3Q9BA 5HJAA 2VQQA 5THTA 2VCGA 3MZ6A 3Q9CA 3ZNRA 2CEVA 3EW8A 4GSZA 5EEIA 4BZ9A 3GN0A 4Q3TA 4GSVA 4I06A 1T5GA 4QA2A 5EENA 5D1CA 5G12A 3Q9EA 2V5XA 2RLAA 4IXVA 3M1RA 3C0YA 1T69A 3SL0A 1T67A 5EFNA 1WVAA 1HQGA 4HZEA 2PHAA 2A0MA 1T64A 4Q3RA 5DC7A 3E6KA 5EEMA 3THJA 3SL1A 4IU0A 1HQ5A 4ZUNA 1ZZ0A 4MYLA 4QA6A 5FCWA 3SKKA 1WVBA 5G10A 3SFHA 1HQFA 1HQHA 1P8RA 3ZNSA 3MFVA 1TBJA 2EIVA 4Q3RC 2GH6A 1RLAA 3NIQA 1ZZ1A 5IX0A 2PLLA 5THVA 1W22A 3EZPA 3THHA 4ZUOA 5HJ9A 4FCKA 3C0ZA 4ITYA 1C3RA 3LP4A 4IU4A 4QA0A 1VKGA 1P8PA 2VQJA 1HQXA 4IE3A 4CBTA 5EFJD 3MZ3A 5G1CA 1P8QA 2V5WA 5A2SA 1T4RA 1ZPEA 5JI5A 3TH7A 1GQ7A 2VQMA 4IU5A 1TBLA
chains in the Genus database with same CATH topology
1T4SA 4Q3VA 4Q41A 3NIPA 4GWCA 4RHLA 3KV2A 3E6VA 2EF4A 1CEVA 1TBHA 4Q40A 5CEVA 3E8QA 4MYKA 3MJLA 4FCIA 1P8MA 1P8OA 2AEBA 4RHJA 1P8SA 4IXUA 3TF3A 1P8NA 4CEVA 1GQ6A 1WOIA 4RHKA 4RHIA 1XFKA 4IU1A 1ZPGA 3NIOA 1GQ7A 4DZ4A 2ZAVA 4RHMA 1WOGA 1TA1A 3PZLA 3MFWA 3CEVA 2PHOA 3E8ZA 4Q3SA 4RHQA 3SJTA 3LP7A 4G3HA 5RLAA 3F80A 4HXQA 3DJ8A 4HWWA 4MYFA 4RLAA 2EF5A 1WOHA 4Q3PA 4MYNA 4GSMA 4IE2A 4Q42A 3THEA 1D3VA 3GMZA 1T4TA 1T5FA 4MXRA 3RLAA 1R1OA 3MMRA 4GWDA 1T4PA 4Q3QA 4IE1A 1PQ3A 5HJAA 3LHLA 4Q3UA 2CEVA 4GSZA 3GN0A 4Q3TA 4GSVA 4I06A 1T5GA 4IXVA 2RLAA 3M1RA 3SL0A 1WVAA 1HQGA 4HZEA 2PHAA 2A0MA 4Q3RA 3E6KA 3THJA 3SL1A 4IU0A 1HQ5A 4MYLA 3SKKA 1WVBA 1HQFA 1HQHA 1P8RA 3MFVA 1TBJA 2EIVA 4Q3RC 1RLAA 3NIQA 2PLLA 3THHA 5HJ9A 4FCKA 4ITYA 3LP4A 4IU4A 1P8PA 1HQXA 4IE3A 1P8QA 1T4RA 1ZPEA 3TH7A 3E9BA 4IU5A 1TBLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T4S A;  4Q3V A;  4Q41 A;  3NIP A;  4GWC A;  4RHL A;  3KV2 A;  3E6V A;  2EF4 A;  1CEV A;  1TBH A;  4Q40 A;  5CEV A;  3E8Q A;  4MYK A;  3MJL A;  4FCI A;  1P8M A;  1P8O A;  2AEB A;  4RHJ A;  1P8S A;  4IXU A;  3TF3 A;  1P8N A;  4CEV A;  1GQ6 A;  1WOI A;  4RHK A;  4RHI A;  1XFK A;  4IU1 A;  1ZPG A;  3NIO A;  1GQ7 A;  4DZ4 A;  2ZAV A;  4RHM A;  1WOG A;  1TA1 A;  3PZL A;  3MFW A;  3CEV A;  2PHO A;  3E8Z A;  4Q3S A;  4RHQ A;  3SJT A;  3LP7 A;  4G3H A;  5RLA A;  3F80 A;  4HXQ A;  3DJ8 A;  4HWW A;  4MYF A;  4RLA A;  2EF5 A;  1WOH A;  4Q3P A;  4MYN A;  4GSM A;  4IE2 A;  4Q42 A;  3THE A;  1D3V A;  3GMZ A;  1T4T A;  1T5F A;  4MXR A;  3RLA A;  1R1O A;  3MMR A;  4GWD A;  1T4P A;  4Q3Q A;  4IE1 A;  1PQ3 A;  5HJA A;  3LHL A;  4Q3U A;  2CEV A;  4GSZ A;  3GN0 A;  4Q3T A;  4GSV A;  4I06 A;  1T5G A;  4IXV A;  2RLA A;  3M1R A;  3SL0 A;  1WVA A;  1HQG A;  4HZE A;  2PHA A;  2A0M A;  4Q3R A;  3E6K A;  3THJ A;  3SL1 A;  4IU0 A;  1HQ5 A;  4MYL A;  3SKK A;  1WVB A;  1HQF A;  1HQH A;  1P8R A;  3MFV A;  1TBJ A;  2EIV A;  4Q3R C;  1RLA A;  3NIQ A;  2PLL A;  3THH A;  5HJ9 A;  4FCK A;  4ITY A;  3LP4 A;  4IU4 A;  1P8P A;  1HQX A;  4IE3 A;  1P8Q A;  1T4R A;  1ZPE A;  3TH7 A;  3E9B A;  4IU5 A;  1TBL A; 
#chains in the Genus database with same CATH topology
 1T4S A;  4Q3V A;  3F07 A;  4QA5 A;  4Q41 A;  5EEK A;  4RN0 A;  3NIP A;  4QA4 A;  4GWC A;  4RHL A;  3SFF A;  5G0J A;  2VQO A;  3KV2 A;  3E6V A;  3E9B A;  2EF4 A;  5DC8 A;  5LI3 A;  4RN2 A;  1CEV A;  1TBH A;  4Q40 A;  5CEV A;  3E8Q A;  4BZ8 A;  4MYK A;  5ICN B;  3MJL A;  5EFH A;  4FCI A;  4CBY A;  1P8M A;  1P8O A;  2AEB A;  4RHJ A;  5D1D A;  5G0H A;  5BWZ A;  1P8S A;  4IXU A;  4RN1 A;  1ZZ3 A;  3TF3 A;  4BZ6 A;  4ZUR A;  1P8N A;  4CQF A;  3C10 A;  5EEF A;  5D1B A;  4CEV A;  1GQ6 A;  1WOI A;  4RHK A;  4BKX B;  4RHI A;  1XFK A;  1C3S A;  4IU1 A;  1ZPG A;  3RQD A;  3MZ7 A;  3NIO A;  3EZT A;  5DC5 A;  4QA3 A;  4DZ4 A;  2ZAV A;  4RHM A;  1WOG A;  1TA1 A;  3PZL A;  5EFG A;  5G0G A;  3MFW A;  5DC6 A;  3F06 A;  3CEV A;  2PHO A;  3E8Z A;  5EFB D;  4BZ5 A;  4ZUP A;  5THS A;  4Q3S A;  5THU A;  4RHQ A;  5EFK B;  4BZ7 A;  3SJT A;  3LP7 A;  4QA7 A;  5G11 A;  4G3H A;  3MEN A;  5RLA A;  4A69 A;  3F80 A;  4HXQ A;  4ZUQ A;  3Q9F A;  5G1A A;  5G13 A;  3MZ4 A;  3DJ8 A;  2VQV A;  2VQW G;  4QA1 A;  5EF7 A;  4HWW A;  4MYF A;  4RLA A;  2EF5 A;  1WOH A;  5FUE A;  4Q3P A;  4MYN A;  3F0R A;  4GSM A;  4IE2 A;  5G0I A;  4Q42 A;  1C3P A;  3THE A;  1D3V A;  3GMZ A;  3MAX A;  5EF8 A;  1T4T A;  5G3W A;  4LY1 A;  1T5F A;  4MXR A;  3RLA A;  5G1B A;  1R1O A;  3MMR A;  5G0Y A;  5G0X A;  4ZUM A;  4GWD A;  1T4P A;  4Q3Q A;  4IE1 A;  4LXZ A;  1PQ3 A;  5IWG A;  5G17 A;  3LHL A;  4Q3U A;  3EWF A;  3Q9B A;  5HJA A;  2VQQ A;  5THT A;  2VCG A;  3MZ6 A;  3Q9C A;  3ZNR A;  2CEV A;  3EW8 A;  4GSZ A;  5EEI A;  4BZ9 A;  3GN0 A;  4Q3T A;  4GSV A;  4I06 A;  1T5G A;  4QA2 A;  5EEN A;  5D1C A;  5G12 A;  3Q9E A;  2V5X A;  2RLA A;  4IXV A;  3M1R A;  3C0Y A;  1T69 A;  3SL0 A;  1T67 A;  5EFN A;  1WVA A;  1HQG A;  4HZE A;  2PHA A;  2A0M A;  1T64 A;  4Q3R A;  5DC7 A;  3E6K A;  5EEM A;  3THJ A;  3SL1 A;  4IU0 A;  1HQ5 A;  4ZUN A;  1ZZ0 A;  4MYL A;  4QA6 A;  5FCW A;  3SKK A;  1WVB A;  5G10 A;  3SFH A;  1HQF A;  1HQH A;  1P8R A;  3ZNS A;  3MFV A;  1TBJ A;  2EIV A;  4Q3R C;  2GH6 A;  1RLA A;  3NIQ A;  1ZZ1 A;  5IX0 A;  2PLL A;  5THV A;  1W22 A;  3EZP A;  3THH A;  4ZUO A;  5HJ9 A;  4FCK A;  3C0Z A;  4ITY A;  1C3R A;  3LP4 A;  4IU4 A;  4QA0 A;  1VKG A;  1P8P A;  2VQJ A;  1HQX A;  4IE3 A;  4CBT A;  5EFJ D;  3MZ3 A;  5G1C A;  1P8Q A;  2V5W A;  5A2S A;  1T4R A;  1ZPE A;  5JI5 A;  3TH7 A;  1GQ7 A;  2VQM A;  4IU5 A;  1TBL A; 
#chains in the Genus database with same CATH homology
 1T4S A;  4Q3V A;  4Q41 A;  3NIP A;  4GWC A;  4RHL A;  3KV2 A;  3E6V A;  2EF4 A;  1CEV A;  1TBH A;  4Q40 A;  5CEV A;  3E8Q A;  4MYK A;  3MJL A;  4FCI A;  1P8M A;  1P8O A;  2AEB A;  4RHJ A;  1P8S A;  4IXU A;  3TF3 A;  1P8N A;  4CEV A;  1GQ6 A;  1WOI A;  4RHK A;  4RHI A;  1XFK A;  4IU1 A;  1ZPG A;  3NIO A;  1GQ7 A;  4DZ4 A;  2ZAV A;  4RHM A;  1WOG A;  1TA1 A;  3PZL A;  3MFW A;  3CEV A;  2PHO A;  3E8Z A;  4Q3S A;  4RHQ A;  3SJT A;  3LP7 A;  4G3H A;  5RLA A;  3F80 A;  4HXQ A;  3DJ8 A;  4HWW A;  4MYF A;  4RLA A;  2EF5 A;  1WOH A;  4Q3P A;  4MYN A;  4GSM A;  4IE2 A;  4Q42 A;  3THE A;  1D3V A;  3GMZ A;  1T4T A;  1T5F A;  4MXR A;  3RLA A;  1R1O A;  3MMR A;  4GWD A;  1T4P A;  4Q3Q A;  4IE1 A;  1PQ3 A;  5HJA A;  3LHL A;  4Q3U A;  2CEV A;  4GSZ A;  3GN0 A;  4Q3T A;  4GSV A;  4I06 A;  1T5G A;  4IXV A;  2RLA A;  3M1R A;  3SL0 A;  1WVA A;  1HQG A;  4HZE A;  2PHA A;  2A0M A;  4Q3R A;  3E6K A;  3THJ A;  3SL1 A;  4IU0 A;  1HQ5 A;  4MYL A;  3SKK A;  1WVB A;  1HQF A;  1HQH A;  1P8R A;  3MFV A;  1TBJ A;  2EIV A;  4Q3R C;  1RLA A;  3NIQ A;  2PLL A;  3THH A;  5HJ9 A;  4FCK A;  4ITY A;  3LP4 A;  4IU4 A;  1P8P A;  1HQX A;  4IE3 A;  1P8Q A;  1T4R A;  1ZPE A;  3TH7 A;  3E9B A;  4IU5 A;  1TBL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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