1PBVA

Sec7 domain of the exchange factor arno
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
195
structure length
195
Chain Sequence
ANEGSKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Exchange factor
molecule keywords ARNO
publication title Structure of the Sec7 domain of the Arf exchange factor ARNO.
pubmed doi rcsb
source organism Homo sapiens
total genus 72
structure length 195
sequence length 195
ec nomenclature
pdb deposition date 1998-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01369 Sec7 Sec7 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.20 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 1pbvA01
1.10.1000.11 Mainly Alpha Orthogonal Bundle Arf Nucleotide-binding Site Opener; domain 2 Arf Nucleotide-binding Site Opener,domain 2 1pbvA02
4D7RA 1RE0B 4JMOA 4JWLA 1XSZA 3LTLA 1R8QE 4JMIA 1R8ME 1BC9A 4L5MA 1S9DE 4Z21A 1XT0B 4A4PA 4D7QA 2R0DA 4JXHA 1R8SE 4C0AA 3L8NA 4OIYA 3SWVA 1PBVA 4C7PA 2R09A 1KU1A
chains in the Genus database with same CATH superfamily
3BRXA 1AEIA 4D7RA 2Q4CA 1XSZA 4JMIA 3AJCA 1M9IA 1ALAA 1BC9A 1MCXA 1S9DE 1YJ0A 4Z21A 1Q8DA 3USWA 1SAVA 2R0DA 4MDUA 4X9PA 1A8BA 1UPTB 2HSNA 1AIIA 4KN4X 1N41A 4KN7X 1R4AE 1RE0B 4JMOA 1N42A 2OY9A 1A8AA 1R8ME 1AVHA 2II2A 1BO9A 4JK1X 1BC3A 1BCZA 2HYVA 4KMUX 1ANWA 1AVRA 1W7BA 2ZHIA 4JXHA 1YCNA 1DK5A 2QEZA 1LKVX 1XJLA 3L8NA 4FQ0C 3TW5A 1PBVA 1AVCA 3AO0A 1YGMA 2R09A 1KU1A 2XO3A 3ABRA 2IE6A 1HVGA 3ABSA 4HREA 4JWLA 1AOWA 1N44A 1HM6A 3LTLA 1R8QE 1DM5A 4L5MA 1ANXA 2IICA 1C1KA 4EVHA 4Q2SA 1HVFA 1AXNA 2ZOCA 1G5NA 1HAKA 1R8SE 2H0KA 2XO2A 1BCYA 3SWVA 2HYWA 4C7PA 2ZHJA 3HJLA 1BC0A 3SOHB 2IE7A 1N00A 1YIIA 2H0MA 3ABOA 4FHRB 1BC1A 2K6XA 1ANNA 4EVFA 1XT0B 2HYUA 4A4PA 2VXGA 4D7QA 4MDVA 1HVEA 1I4AA 1W3WA 4C0AA 4OIYA 1QC7A 3ANYA 3ABQA 1W45A 1HVDA 2RANA 2H0LA 1BCWA 3USYA
chains in the Genus database with same CATH topology
4KN7X 4D7RA 1RE0B 4JMOA 4FHRB 4JWLA 1XSZA 3LTLA 1R8QE 4JMIA 3AJCA 2K6XA 1BC9A 1R8ME 4L5MA 4JK1X 4KMUX 1S9DE 4Z21A 1Q8DA 1XT0B 4A4PA 3USWA 4D7QA 2R0DA 4JXHA 1R8SE 1LKVX 4C0AA 3L8NA 4FQ0C 3TW5A 4OIYA 1QC7A 3SWVA 1PBVA 2HSNA 4C7PA 4KN4X 3HJLA 3SOHB 2R09A 1KU1A 3USYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D7R A;  1RE0 B;  4JMO A;  4JWL A;  1XSZ A;  3LTL A;  1R8Q E;  4JMI A;  1R8M E;  1BC9 A;  4L5M A;  1S9D E;  4Z21 A;  1XT0 B;  4A4P A;  4D7Q A;  2R0D A;  4JXH A;  1R8S E;  4C0A A;  3L8N A;  4OIY A;  3SWV A;  1PBV A;  4C7P A;  2R09 A;  1KU1 A; 
#chains in the Genus database with same CATH topology
 3BRX A;  1AEI A;  4D7R A;  2Q4C A;  1XSZ A;  4JMI A;  3AJC A;  1M9I A;  1ALA A;  1BC9 A;  1MCX A;  1S9D E;  1YJ0 A;  4Z21 A;  1Q8D A;  3USW A;  1SAV A;  2R0D A;  4MDU A;  4X9P A;  1A8B A;  1UPT B;  2HSN A;  1AII A;  4KN4 X;  1N41 A;  4KN7 X;  1R4A E;  1RE0 B;  4JMO A;  1N42 A;  2OY9 A;  1A8A A;  1R8M E;  1AVH A;  2II2 A;  1BO9 A;  4JK1 X;  1BC3 A;  1BCZ A;  2HYV A;  4KMU X;  1ANW A;  1AVR A;  1W7B A;  2ZHI A;  4JXH A;  1YCN A;  1DK5 A;  2QEZ A;  1LKV X;  1XJL A;  3L8N A;  4FQ0 C;  3TW5 A;  1PBV A;  1AVC A;  3AO0 A;  1YGM A;  2R09 A;  1KU1 A;  2XO3 A;  3ABR A;  2IE6 A;  1HVG A;  3ABS A;  4HRE A;  4JWL A;  1AOW A;  1N44 A;  1HM6 A;  3LTL A;  1R8Q E;  1DM5 A;  4L5M A;  1ANX A;  2IIC A;  1C1K A;  4EVH A;  4Q2S A;  1HVF A;  1AXN A;  2ZOC A;  1G5N A;  1HAK A;  1R8S E;  2H0K A;  2XO2 A;  1BCY A;  3SWV A;  2HYW A;  4C7P A;  2ZHJ A;  3HJL A;  1BC0 A;  3SOH B;  2IE7 A;  1N00 A;  1YII A;  2H0M A;  3ABO A;  4FHR B;  1BC1 A;  2K6X A;  1ANN A;  4EVF A;  1XT0 B;  2HYU A;  4A4P A;  2VXG A;  4D7Q A;  4MDV A;  1HVE A;  1I4A A;  1W3W A;  4C0A A;  4OIY A;  1QC7 A;  3ANY A;  3ABQ A;  1W45 A;  1HVD A;  2RAN A;  2H0L A;  1BCW A;  3USY A; 
#chains in the Genus database with same CATH homology
 4KN7 X;  4D7R A;  1RE0 B;  4JMO A;  4FHR B;  4JWL A;  1XSZ A;  3LTL A;  1R8Q E;  4JMI A;  3AJC A;  2K6X A;  1BC9 A;  1R8M E;  4L5M A;  4JK1 X;  4KMU X;  1S9D E;  4Z21 A;  1Q8D A;  1XT0 B;  4A4P A;  3USW A;  4D7Q A;  2R0D A;  4JXH A;  1R8S E;  1LKV X;  4C0A A;  3L8N A;  4FQ0 C;  3TW5 A;  4OIY A;  1QC7 A;  3SWV A;  1PBV A;  2HSN A;  4C7P A;  4KN4 X;  3HJL A;  3SOH B;  2R09 A;  1KU1 A;  3USY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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