The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
124
|
sequence length |
489
|
structure length |
489
|
Chain Sequence |
VTGEEVLQNACAACHVQHEDGRWERIDAARKTPEGWDMTVTRMMRNHGVALEPEERAAIVRHLSDTRGLSLAETEERRYILEREPVAWDEGPDTSMTQTCGRCHSYARVALQRRTPEDWKHLVNFHLGQFPTLEYQALARDRDWWGIAQAEIIPFLARTYPLGEAPDAYADDASGAYVLAGRQPGRGDYTGRLVLKKAGEDYEVTMTLDFADGSRSFSGTGRILGAGEWRATLSDGTVTIRQIFALQDGRFSGRWHDADSDVIGGRLAAVKADAAPQVLAVAPARLKIGEETQLRVAGTGLGSDLTLPEGVAGSVESAGNGVTVLKLTATGTPGPVSLELGGQKVDLVAYDRPDRISIVPDLTIARIGGNGGPIPKVPAQFEAMGWLNGPDGQPGTGDDIALGAFPASWATDNFDEEAEKMQDAKYAGSIDDTGLFTPAEAGPNPERPMQTNNAGNLKVIATVDAEGEPLSAEAHLYATVQRFVDAPIR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Structure of the phenylhydrazine adduct of the quinohemoprotein amine dehydrogenase from Paracoccus denitrificans at 1.7 A resolution.
pubmed doi rcsb |
molecule keywords |
quinohemoprotein amine dehydrogenase 60 kDa subunit
|
molecule tags |
Oxidoreductase
|
source organism |
Paracoccus denitrificans
|
total genus |
124
|
structure length |
489
|
sequence length |
489
|
ec nomenclature |
ec
1.4.99.3: Transferred entry: 1.4.9.1. |
pdb deposition date | 2003-05-15 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF09098 | Dehyd-heme_bind | Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding |
A | PF09099 | Qn_am_d_aIII | Quinohemoprotein amine dehydrogenase, alpha subunit domain III |
A | PF09100 | Qn_am_d_aIV | Quinohemoprotein amine dehydrogenase, alpha subunit domain IV |
A | PF14930 | Qn_am_d_aII | Quinohemoprotein amine dehydrogenase, alpha subunit domain II |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Beta Barrel | Lipocalin | Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | ||
Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | ||
Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins |