1PCFA

Human transcriptional coactivator pc4 c-terminal domain
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
66
structure length
66
Chain Sequence
AMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords TRANSCRIPTIONAL COACTIVATOR PC4
publication title C-terminal domain of transcription cofactor PC4 reveals dimeric ssDNA binding site.
pubmed doi rcsb
source organism Homo sapiens
total genus 16
structure length 66
sequence length 66
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 1997-09-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02229 PC4 Transcriptional Coactivator p15 (PC4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.31.10 Mainly Beta Roll Transcriptional Co-activator pc4; Chain A Transcriptional Coactivator Pc4; Chain A 1pcfA00
1PCFA 4KOOA 4KOPA 4BHMA 4BG7A 4AGHA 2C62A 3N1HA 3N1LA 4USGA 2IT9A 2PHEA 3R9YA 3N1IA 3R9ZA 3N1JA 3N1KA 3RA0A 1L3AA 4KOQA 2NVNA
chains in the Genus database with same CATH superfamily
1PCFA 4KOOA 4BODA 4KOPA 3CM1A 2GIAB 2GIAA 4BHMA 3OBHA 4BG7A 5FGPA 2GJED 4AGHA 2GJEA 4BOBA 2C62A 2M4FA 3N1HA 4BF3A 3N1LA 3K44A 4USGA 3MTVA 2IT9A 2PHEA 4BXMA 2GIDB 2GIDA 3R9YA 3N1IA 4J38A 3R9ZA 3N1JA 3N1KA 3RA0A 1L3AA 4KOQA 2NVNA
chains in the Genus database with same CATH topology
1PCFA 4KOOA 4KOPA 4BHMA 4BG7A 4AGHA 2C62A 3N1HA 3N1LA 4USGA 2IT9A 2PHEA 3R9YA 3N1IA 3R9ZA 3N1JA 3N1KA 3RA0A 1L3AA 4KOQA 2NVNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PCF A;  4KOO A;  4KOP A;  4BHM A;  4BG7 A;  4AGH A;  2C62 A;  3N1H A;  3N1L A;  4USG A;  2IT9 A;  2PHE A;  3R9Y A;  3N1I A;  3R9Z A;  3N1J A;  3N1K A;  3RA0 A;  1L3A A;  4KOQ A;  2NVN A; 
#chains in the Genus database with same CATH topology
 1PCF A;  4KOO A;  4BOD A;  4KOP A;  3CM1 A;  2GIA B;  2GIA A;  4BHM A;  3OBH A;  4BG7 A;  5FGP A;  2GJE D;  4AGH A;  2GJE A;  4BOB A;  2C62 A;  2M4F A;  3N1H A;  4BF3 A;  3N1L A;  3K44 A;  4USG A;  3MTV A;  2IT9 A;  2PHE A;  4BXM A;  2GID B;  2GID A;  3R9Y A;  3N1I A;  4J38 A;  3R9Z A;  3N1J A;  3N1K A;  3RA0 A;  1L3A A;  4KOQ A;  2NVN A; 
#chains in the Genus database with same CATH homology
 1PCF A;  4KOO A;  4KOP A;  4BHM A;  4BG7 A;  4AGH A;  2C62 A;  3N1H A;  3N1L A;  4USG A;  2IT9 A;  2PHE A;  3R9Y A;  3N1I A;  3R9Z A;  3N1J A;  3N1K A;  3RA0 A;  1L3A A;  4KOQ A;  2NVN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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