1PCJX

Enzyme-ligand complex of p. aeruginosa pmm/pgm
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
458
structure length
457
Chain Sequence
APTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Phosphomannomutase
publication title Structural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Isomerase
total genus 172
structure length 457
sequence length 458
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2003-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
X PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1pcjX04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1pcjX03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1pcjX01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1pcjX02
2JPIA 3ENCA 3OLPA 1C47A 3I3WA 2DKCA 1C4GA 1JDYA 1KFIA 2F7LA 1K2YX 3UW2A 5KL0A 2Z0FA 2DKAA 1VKLA 2H5AX 1P5DX 5F9CA 3PDKA 2FKFA 3RSMA 4MRQA 1WQAA 3C04A 5BMNA 1LXTA 3NA5A 5JMVD 3BKQX 4HJHA 4WX8A 4IL8A 2EIUA 3ENOC 2H4LX 4QG5A 5BMPA 5EPCA 2DKDA 1WJWA 4BJUA 5HSHA 2EHPA 2FKMX 1K35A 1TUOA 2FUVA 1KFQA 1PCMX 3PMGA 4WXAA 1P5GX 5JN5A 1PCJX
chains in the Genus database with same CATH superfamily
4WZSD 3OSEA 1TBAB 4Q11A 2PWWA 3ENCA 1Q9UA 2NWVA 1PVSA 3KRMA 1E42A 2QR1A 3UW2A 1N3AA 1VTOA 1UT4A 1XSZA 3SNSA 5F9CA 1NGMA 3CWSA 3RSMA 2JHNA 4MRQA 1WQAA 3C04A 4D7QA 3BKQX 3T4NA 3OC3C 1EUVA 1VOKA 1UT7A 2HL9A 3OSTA 1N3CA 1QNCA 1V5SA 3F10A 5BMPA 3HS9A 2QREA 2LAEA 2NOZA 2OOXA 2DKDA 3I0WA 1C9BB 2D0AA 5HSHA 3N89A 1K35A 1TUOA 2FUVA 3DPTA 5JN5A 1YQRA 1KYDA 4RODB 1QN5A 1PCJX 2HL8A 3H1ZA 2JHJA 1YQKA 2YH5A 3ASMA 2O3OA 4ROEB 3VN5A 1QN7A 2NOEA 1QN6A 1KY6A 1KFIA 1JDYA 1K2YX 2F7LA 3RPJA 1FN7A 1CDWA 2DKAA 1MPGA 2D0BA 3D7QA 1TGHA 2EHBD 1QN4A 2Y8LA 1QTSA 3TDHA 1LXTA 3NA5A 2QRDA 2VJ0A 3ULXA 4ROCB 1YTBA 3CVTA 3OSMA 4HJHA 4CFFA 4PY5A 2IV8A 2NOFA 1KY7A 1TBPA 1QNEA 5EPCA 2OOYA 2NOHA 1KO9A 2EHPA 2FKMX 1YQMA 1KFQA 1PCMX 4WXAA 4EALA 3OCIA 2D0CA 2NVMA 2Z0FA 3PMGA 4B0AA 1AISA 1D3UA 2JPIA 2MZ8A 3OLPA 3OH6A 4DULA 1PCZA 3I3WA 3CW7A 4C7PA 1N39A 2DKCA 1C4GA 3OGDA 2FGTA 1KYFA 1JFIC 1J3MA 5IYCP 5KL0A 2NLVA 1VKLA 1NH2A 3CWTA 4EAKA 4TPSA 2JOIA 1QNBA 3CWUA 2V92A 4D7RA 5BMNA 4I8OA 1LWYA 2V8QA 3F0ZA 2QRCA 1VTLE 4WX8A 3DPUA 1RM1A 1QTPA 1QN9A 2IV9A 2NOBA 2H4LX 3OH9A 1QNAA 4QG5A 1LWWA 3I0XA 2XHIA 1YTFA 1MP9A 1M3HA 2R5XA 3HS8A 4EJYA 2HZSA 1P5GX 1EBMA 3CWAA 2ZFDB 3EAYA 1HU0A 2V9JA 2NOIA 2YA3A 1C47A 1UL7A 1R4XA 2HKPA 1T6AA 1W80A 3KTUA 1PZDA 1B9KA 1KYUA 1NVPA 1LWVA 2H5AX 2MJ7A 4EAGA 3D4VA 2FKFA 3CVSA 1YQLA 2HZMA 5IYDP 1QN3A 2QLVA 5JMVD 3IH7A 4EJZA 5IYBP 1VOLB 1DIZA 2Y8QA 4IL8A 2EIUA 3ENOC 5AN4A 2G30A 2Z8UA 1M5Q1 3EIKA 3TE5A 2NOLA 2I5WA 1WJWA 4EAIA 4BJUA 1M3QA 1QN8A 3PDKA 4EAJA 1P5DX
chains in the Genus database with same CATH topology
2JPIA 3ENCA 3OLPA 1C47A 3I3WA 2DKCA 1C4GA 1JDYA 1KFIA 2F7LA 1K2YX 3UW2A 5KL0A 2Z0FA 2DKAA 1VKLA 2H5AX 1P5DX 5F9CA 3PDKA 2FKFA 3RSMA 4MRQA 1WQAA 3C04A 5BMNA 1LXTA 3NA5A 5JMVD 3BKQX 4HJHA 4WX8A 4IL8A 2EIUA 3ENOC 2H4LX 4QG5A 5BMPA 5EPCA 2DKDA 1WJWA 4BJUA 5HSHA 2EHPA 2FKMX 1K35A 1TUOA 2FUVA 1KFQA 1PCMX 3PMGA 4WXAA 1P5GX 5JN5A 1PCJX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JPI A;  3ENC A;  3OLP A;  1C47 A;  3I3W A;  2DKC A;  1C4G A;  1JDY A;  1KFI A;  2F7L A;  1K2Y X;  3UW2 A;  5KL0 A;  2Z0F A;  2DKA A;  1VKL A;  2H5A X;  1P5D X;  5F9C A;  3PDK A;  2FKF A;  3RSM A;  4MRQ A;  1WQA A;  3C04 A;  5BMN A;  1LXT A;  3NA5 A;  5JMV D;  3BKQ X;  4HJH A;  4WX8 A;  4IL8 A;  2EIU A;  3ENO C;  2H4L X;  4QG5 A;  5BMP A;  5EPC A;  2DKD A;  1WJW A;  4BJU A;  5HSH A;  2EHP A;  2FKM X;  1K35 A;  1TUO A;  2FUV A;  1KFQ A;  1PCM X;  3PMG A;  4WXA A;  1P5G X;  5JN5 A;  1PCJ X; 
#chains in the Genus database with same CATH topology
 4WZS D;  3OSE A;  1TBA B;  4Q11 A;  2PWW A;  3ENC A;  1Q9U A;  2NWV A;  1PVS A;  3KRM A;  1E42 A;  2QR1 A;  3UW2 A;  1N3A A;  1VTO A;  1UT4 A;  1XSZ A;  3SNS A;  5F9C A;  1NGM A;  3CWS A;  3RSM A;  2JHN A;  4MRQ A;  1WQA A;  3C04 A;  4D7Q A;  3BKQ X;  3T4N A;  3OC3 C;  1EUV A;  1VOK A;  1UT7 A;  2HL9 A;  3OST A;  1N3C A;  1QNC A;  1V5S A;  3F10 A;  5BMP A;  3HS9 A;  2QRE A;  2LAE A;  2NOZ A;  2OOX A;  2DKD A;  3I0W A;  1C9B B;  2D0A A;  5HSH A;  3N89 A;  1K35 A;  1TUO A;  2FUV A;  3DPT A;  5JN5 A;  1YQR A;  1KYD A;  4ROD B;  1QN5 A;  1PCJ X;  2HL8 A;  3H1Z A;  2JHJ A;  1YQK A;  2YH5 A;  3ASM A;  2O3O A;  4ROE B;  3VN5 A;  1QN7 A;  2NOE A;  1QN6 A;  1KY6 A;  1KFI A;  1JDY A;  1K2Y X;  2F7L A;  3RPJ A;  1FN7 A;  1CDW A;  2DKA A;  1MPG A;  2D0B A;  3D7Q A;  1TGH A;  2EHB D;  1QN4 A;  2Y8L A;  1QTS A;  3TDH A;  1LXT A;  3NA5 A;  2QRD A;  2VJ0 A;  3ULX A;  4ROC B;  1YTB A;  3CVT A;  3OSM A;  4HJH A;  4CFF A;  4PY5 A;  2IV8 A;  2NOF A;  1KY7 A;  1TBP A;  1QNE A;  5EPC A;  2OOY A;  2NOH A;  1KO9 A;  2EHP A;  2FKM X;  1YQM A;  1KFQ A;  1PCM X;  4WXA A;  4EAL A;  3OCI A;  2D0C A;  2NVM A;  2Z0F A;  3PMG A;  4B0A A;  1AIS A;  1D3U A;  2JPI A;  2MZ8 A;  3OLP A;  3OH6 A;  4DUL A;  1PCZ A;  3I3W A;  3CW7 A;  4C7P A;  1N39 A;  2DKC A;  1C4G A;  3OGD A;  2FGT A;  1KYF A;  1JFI C;  1J3M A;  5IYC P;  5KL0 A;  2NLV A;  1VKL A;  1NH2 A;  3CWT A;  4EAK A;  4TPS A;  2JOI A;  1QNB A;  3CWU A;  2V92 A;  4D7R A;  5BMN A;  4I8O A;  1LWY A;  2V8Q A;  3F0Z A;  2QRC A;  1VTL E;  4WX8 A;  3DPU A;  1RM1 A;  1QTP A;  1QN9 A;  2IV9 A;  2NOB A;  2H4L X;  3OH9 A;  1QNA A;  4QG5 A;  1LWW A;  3I0X A;  2XHI A;  1YTF A;  1MP9 A;  1M3H A;  2R5X A;  3HS8 A;  4EJY A;  2HZS A;  1P5G X;  1EBM A;  3CWA A;  2ZFD B;  3EAY A;  1HU0 A;  2V9J A;  2NOI A;  2YA3 A;  1C47 A;  1UL7 A;  1R4X A;  2HKP A;  1T6A A;  1W80 A;  3KTU A;  1PZD A;  1B9K A;  1KYU A;  1NVP A;  1LWV A;  2H5A X;  2MJ7 A;  4EAG A;  3D4V A;  2FKF A;  3CVS A;  1YQL A;  2HZM A;  5IYD P;  1QN3 A;  2QLV A;  5JMV D;  3IH7 A;  4EJZ A;  5IYB P;  1VOL B;  1DIZ A;  2Y8Q A;  4IL8 A;  2EIU A;  3ENO C;  5AN4 A;  2G30 A;  2Z8U A;  1M5Q 1;  3EIK A;  3TE5 A;  2NOL A;  2I5W A;  1WJW A;  4EAI A;  4BJU A;  1M3Q A;  1QN8 A;  3PDK A;  4EAJ A;  1P5D X; 
#chains in the Genus database with same CATH homology
 2JPI A;  3ENC A;  3OLP A;  1C47 A;  3I3W A;  2DKC A;  1C4G A;  1JDY A;  1KFI A;  2F7L A;  1K2Y X;  3UW2 A;  5KL0 A;  2Z0F A;  2DKA A;  1VKL A;  2H5A X;  1P5D X;  5F9C A;  3PDK A;  2FKF A;  3RSM A;  4MRQ A;  1WQA A;  3C04 A;  5BMN A;  1LXT A;  3NA5 A;  5JMV D;  3BKQ X;  4HJH A;  4WX8 A;  4IL8 A;  2EIU A;  3ENO C;  2H4L X;  4QG5 A;  5BMP A;  5EPC A;  2DKD A;  1WJW A;  4BJU A;  5HSH A;  2EHP A;  2FKM X;  1K35 A;  1TUO A;  2FUV A;  1KFQ A;  1PCM X;  3PMG A;  4WXA A;  1P5G X;  5JN5 A;  1PCJ X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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