1PCPA

Solution structure of a trefoil-motif-containing cell growth factor, porcine spasmolytic protein
Total Genus 8
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
106
structure length
106
Chain Sequence
EKPAACRCSRQDPKNRVNCGFPGITSDQCFTSGCCFDSQVPGVPWCFKPLPAQESEECVMQVSARKNCGYPGISPEDCAARNCCFSDTIPEVPWCFFPMSVEDCHY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Growth factor
molecule keywords PORCINE SPASMOLYTIC PROTEIN
publication title Solution structure of a trefoil-motif-containing cell growth factor, porcine spasmolytic protein.
pubmed doi rcsb
source organism Sus scrofa
total genus 8
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 1993-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00088 Trefoil Trefoil (P-type) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.110.10 Few Secondary Structures Irregular Spasmolytic Protein; domain 1 Spasmolytic Protein, domain 1 1pcpA02
4.10.110.10 Few Secondary Structures Irregular Spasmolytic Protein; domain 1 Spasmolytic Protein, domain 1 1pcpA01
2QMJA 1E9TA 3L4XA 3L4WA 3L4YA 1PSPA 3L4VA 1PE31 2PSPA 3LPPA 3LPOA 3TOPA 1PCPA 3L4UA 3CTTA 3TONA 3L4TA 1PS2A 2QLYA 3L4ZA 1HI7A
chains in the Genus database with same CATH superfamily
2QMJA 1E9TA 3L4XA 3L4WA 3L4YA 1PSPA 3L4VA 1PE31 2PSPA 3LPPA 3LPOA 3TOPA 1PCPA 3L4UA 3CTTA 3TONA 1XU6A 3L4TA 1PS2A 2QLYA 3L4ZA 1HI7A
chains in the Genus database with same CATH topology
2QMJA 1E9TA 3L4XA 3L4WA 3L4YA 1PSPA 3L4VA 1PE31 2PSPA 3LPPA 3LPOA 3TOPA 1PCPA 3L4UA 3CTTA 3TONA 3L4TA 1PS2A 2QLYA 3L4ZA 1HI7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QMJ A;  1E9T A;  3L4X A;  3L4W A;  3L4Y A;  1PSP A;  3L4V A;  1PE3 1;  2PSP A;  3LPP A;  3LPO A;  3TOP A;  1PCP A;  3L4U A;  3CTT A;  3TON A;  3L4T A;  1PS2 A;  2QLY A;  3L4Z A;  1HI7 A; 
#chains in the Genus database with same CATH topology
 2QMJ A;  1E9T A;  3L4X A;  3L4W A;  3L4Y A;  1PSP A;  3L4V A;  1PE3 1;  2PSP A;  3LPP A;  3LPO A;  3TOP A;  1PCP A;  3L4U A;  3CTT A;  3TON A;  1XU6 A;  3L4T A;  1PS2 A;  2QLY A;  3L4Z A;  1HI7 A; 
#chains in the Genus database with same CATH homology
 2QMJ A;  1E9T A;  3L4X A;  3L4W A;  3L4Y A;  1PSP A;  3L4V A;  1PE3 1;  2PSP A;  3LPP A;  3LPO A;  3TOP A;  1PCP A;  3L4U A;  3CTT A;  3TON A;  3L4T A;  1PS2 A;  2QLY A;  3L4Z A;  1HI7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...