1PCZA

Structure of tata-binding protein
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
183
structure length
183
Chain Sequence
VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKYGLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TATA-BINDING PROTEIN
publication title The crystal structure of a hyperthermophilic archaeal TATA-box binding protein.
pubmed doi rcsb
source organism Pyrococcus woesei
molecule tags Dna binding protein
total genus 50
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature
pdb deposition date 1996-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1pczA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1pczA02
1B9KA 1KY7A 1VTLE 5IYDP 5IYCP 3ASMA 2D0BA 1MP9A 1PZDA 1QN3A 3H1ZA 3HS8A 2G30A 2IV9A 1QTPA 1KYFA 3EIKA 1NH2A 2VJ0A 1QN4A 1YTFA 1CDWA 1VOKA 1TBAB 1QN8A 1C9BB 1NGMA 4ROEB 4WZSD 1RM1A 3OC3C 1QNBA 1QN7A 1YTBA 2IV8A 2D0CA 1KYUA 4RODB 1D3UA 1QN6A 1W80A 1KYDA 1KY6A 3OCIA 1QNAA 1AISA 1TBPA 3VN5A 1QTSA 2D0AA 3HS9A 1NVPA 2MJ7A 1R4XA 1PCZA 2Z8UA 1VTOA 1QN5A 1QNEA 1TGHA 4PY5A 1QNCA 1E42A 4B0AA 1JFIC 1QN9A 5IYBP 4ROCB 1VOLB
chains in the Genus database with same CATH superfamily
2YH5A 2YA3A 1M3QA 5IYDP 5F9CA 1EBMA 3OSMA 2DKDA 2HL8A 1DIZA 4TPSA 3EAYA 3SNSA 1QN3A 2QREA 3KTUA 2G30A 1YTFA 1NH2A 1HU0A 1CDWA 2MZ8A 2FKFA 1NGMA 2QRDA 4ROEB 4WZSD 1RM1A 2NOFA 1KYUA 1JDYA 3KRMA 5AN4A 4MRQA 1K35A 2XHIA 3CWSA 1AISA 3CWAA 3OSEA 1XSZA 2NLVA 3ENOC 1YQLA 3OH9A 4D7RA 1LWWA 2Z8UA 4EALA 2NVMA 3DPTA 4PY5A 4BJUA 1LWYA 3CWTA 4Q11A 3RSMA 1C4GA 1KY7A 2FGTA 1VTLE 4EJZA 2NOEA 3BKQX 2EHBD 1PVSA 2D0BA 2JHNA 2NOHA 2Y8QA 5JN5A 2IV9A 2NOBA 2OOXA 2VJ0A 1WQAA 2H5AX 1VOKA 4WX8A 3D4VA 2NOIA 3DPUA 3TE5A 2O3OA 2V9JA 2NOZA 1MPGA 2IV8A 4CFFA 3OSTA 3CW7A 4WXAA 1W80A 3UW2A 4C7PA 3I0XA 2H4LX 3C04A 1KY6A 1KFIA 2HZSA 3F10A 3I3WA 4EAJA 3CWUA 1YQMA 1J3MA 2Z0FA 1R4XA 1N39A 1Q9UA 5EPCA 1YQRA 1PCJX 5JMVD 1TGHA 1KFQA 1QNCA 1VKLA 4ROCB 2JHJA 4HJHA 1VOLB 1EUVA 1B9KA 1WJWA 1PCMX 3ASMA 5KL0A 1MP9A 4DULA 2JPIA 1PZDA 2V92A 1UT7A 1P5GX 2HKPA 1QTPA 1KYFA 3T4NA 1C47A 3CVSA 2ZFDB 3I0WA 1C9BB 3N89A 1LWVA 2DKAA 4EAIA 2Y8LA 1YQKA 1YTBA 4D7QA 3ULXA 2HZMA 2LAEA 1FN7A 1KYDA 3OCIA 2I5WA 3PMGA 2FUVA 3HS9A 5BMPA 1VTOA 4EAKA 1QN5A 5BMNA 1KO9A 1LXTA 1E42A 4B0AA 3TDHA 3CVTA 4QG5A 3OH6A 1N3AA 5IYCP 2HL9A 3NA5A 1UL7A 1N3CA 3OLPA 3H1ZA 3HS8A 3EIKA 3IH7A 1QN4A 1V5SA 1UT4A 1TBAB 1M5Q1 1QN8A 1P5DX 4EJYA 1M3HA 2QLVA 1QNBA 3RPJA 3OC3C 1QN7A 2OOYA 2D0CA 2DKCA 4RODB 4I8OA 5HSHA 1D3UA 1QN6A 2JOIA 2QR1A 2PWWA 3PDKA 4IL8A 1QNAA 2R5XA 1TBPA 3OGDA 1T6AA 2QRCA 3VN5A 1QTSA 1K2YX 2D0AA 2NWVA 2MJ7A 1NVPA 1PCZA 2V8QA 3F0ZA 3D7QA 1TUOA 4EAGA 1QNEA 3ENCA 2F7LA 1JFIC 1QN9A 2FKMX 5IYBP 2NOLA
chains in the Genus database with same CATH topology
2YH5A 5IYDP 1M3QA 1EBMA 3OSMA 4TPSA 3SNSA 1QN3A 3KTUA 2G30A 1YTFA 1NH2A 1HU0A 1CDWA 2MZ8A 1NGMA 4ROEB 4WZSD 1RM1A 2NOFA 1KYUA 3KRMA 5AN4A 2XHIA 1AISA 1YQLA 1LWWA 2Z8UA 3DPTA 4PY5A 1LWYA 4Q11A 1KY7A 2FGTA 1VTLE 4EJZA 2NOEA 2D0BA 2NOHA 2IV9A 2NOBA 2VJ0A 2NOIA 1VOKA 3DPUA 2O3OA 2NOZA 2IV8A 3OSTA 1W80A 3I0XA 1KY6A 2HZSA 3F10A 1YQMA 1R4XA 1N39A 1YQRA 1TGHA 1QNCA 4ROCB 1VOLB 1B9KA 3ASMA 1MP9A 4DULA 1PZDA 1UT7A 1QTPA 1KYFA 1C9BB 3I0WA 3N89A 1LWVA 1YQKA 1YTBA 3ULXA 2HZMA 2LAEA 1FN7A 1KYDA 3OCIA 2I5WA 3HS9A 1VTOA 1QN5A 1KO9A 1E42A 4B0AA 1N3AA 5IYCP 1N3CA 3H1ZA 3HS8A 3EIKA 3IH7A 1QN4A 1UT4A 1TBAB 1QN8A 4EJYA 1M3HA 1QNBA 3RPJA 3OC3C 1QN7A 2D0CA 4RODB 4I8OA 1D3UA 1QN6A 2JOIA 1QNAA 1TBPA 3VN5A 1QTSA 2D0AA 1NVPA 2MJ7A 1PCZA 3F0ZA 1QNEA 1JFIC 1QN9A 5IYBP 2NOLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B9K A;  1KY7 A;  1VTL E;  5IYD P;  5IYC P;  3ASM A;  2D0B A;  1MP9 A;  1PZD A;  1QN3 A;  3H1Z A;  3HS8 A;  2G30 A;  2IV9 A;  1QTP A;  1KYF A;  3EIK A;  1NH2 A;  2VJ0 A;  1QN4 A;  1YTF A;  1CDW A;  1VOK A;  1TBA B;  1QN8 A;  1C9B B;  1NGM A;  4ROE B;  4WZS D;  1RM1 A;  3OC3 C;  1QNB A;  1QN7 A;  1YTB A;  2IV8 A;  2D0C A;  1KYU A;  4ROD B;  1D3U A;  1QN6 A;  1W80 A;  1KYD A;  1KY6 A;  3OCI A;  1QNA A;  1AIS A;  1TBP A;  3VN5 A;  1QTS A;  2D0A A;  3HS9 A;  1NVP A;  2MJ7 A;  1R4X A;  1PCZ A;  2Z8U A;  1VTO A;  1QN5 A;  1QNE A;  1TGH A;  4PY5 A;  1QNC A;  1E42 A;  4B0A A;  1JFI C;  1QN9 A;  5IYB P;  4ROC B;  1VOL B; 
#chains in the Genus database with same CATH topology
 2YH5 A;  2YA3 A;  1M3Q A;  5IYD P;  5F9C A;  1EBM A;  3OSM A;  2DKD A;  2HL8 A;  1DIZ A;  4TPS A;  3EAY A;  3SNS A;  1QN3 A;  2QRE A;  3KTU A;  2G30 A;  1YTF A;  1NH2 A;  1HU0 A;  1CDW A;  2MZ8 A;  2FKF A;  1NGM A;  2QRD A;  4ROE B;  4WZS D;  1RM1 A;  2NOF A;  1KYU A;  1JDY A;  3KRM A;  5AN4 A;  4MRQ A;  1K35 A;  2XHI A;  3CWS A;  1AIS A;  3CWA A;  3OSE A;  1XSZ A;  2NLV A;  3ENO C;  1YQL A;  3OH9 A;  4D7R A;  1LWW A;  2Z8U A;  4EAL A;  2NVM A;  3DPT A;  4PY5 A;  4BJU A;  1LWY A;  3CWT A;  4Q11 A;  3RSM A;  1C4G A;  1KY7 A;  2FGT A;  1VTL E;  4EJZ A;  2NOE A;  3BKQ X;  2EHB D;  1PVS A;  2D0B A;  2JHN A;  2NOH A;  2Y8Q A;  5JN5 A;  2IV9 A;  2NOB A;  2OOX A;  2VJ0 A;  1WQA A;  2H5A X;  1VOK A;  4WX8 A;  3D4V A;  2NOI A;  3DPU A;  3TE5 A;  2O3O A;  2V9J A;  2NOZ A;  1MPG A;  2IV8 A;  4CFF A;  3OST A;  3CW7 A;  4WXA A;  1W80 A;  3UW2 A;  4C7P A;  3I0X A;  2H4L X;  3C04 A;  1KY6 A;  1KFI A;  2HZS A;  3F10 A;  3I3W A;  4EAJ A;  3CWU A;  1YQM A;  1J3M A;  2Z0F A;  1R4X A;  1N39 A;  1Q9U A;  5EPC A;  1YQR A;  1PCJ X;  5JMV D;  1TGH A;  1KFQ A;  1QNC A;  1VKL A;  4ROC B;  2JHJ A;  4HJH A;  1VOL B;  1EUV A;  1B9K A;  1WJW A;  1PCM X;  3ASM A;  5KL0 A;  1MP9 A;  4DUL A;  2JPI A;  1PZD A;  2V92 A;  1UT7 A;  1P5G X;  2HKP A;  1QTP A;  1KYF A;  3T4N A;  1C47 A;  3CVS A;  2ZFD B;  3I0W A;  1C9B B;  3N89 A;  1LWV A;  2DKA A;  4EAI A;  2Y8L A;  1YQK A;  1YTB A;  4D7Q A;  3ULX A;  2HZM A;  2LAE A;  1FN7 A;  1KYD A;  3OCI A;  2I5W A;  3PMG A;  2FUV A;  3HS9 A;  5BMP A;  1VTO A;  4EAK A;  1QN5 A;  5BMN A;  1KO9 A;  1LXT A;  1E42 A;  4B0A A;  3TDH A;  3CVT A;  4QG5 A;  3OH6 A;  1N3A A;  5IYC P;  2HL9 A;  3NA5 A;  1UL7 A;  1N3C A;  3OLP A;  3H1Z A;  3HS8 A;  3EIK A;  3IH7 A;  1QN4 A;  1V5S A;  1UT4 A;  1TBA B;  1M5Q 1;  1QN8 A;  1P5D X;  4EJY A;  1M3H A;  2QLV A;  1QNB A;  3RPJ A;  3OC3 C;  1QN7 A;  2OOY A;  2D0C A;  2DKC A;  4ROD B;  4I8O A;  5HSH A;  1D3U A;  1QN6 A;  2JOI A;  2QR1 A;  2PWW A;  3PDK A;  4IL8 A;  1QNA A;  2R5X A;  1TBP A;  3OGD A;  1T6A A;  2QRC A;  3VN5 A;  1QTS A;  1K2Y X;  2D0A A;  2NWV A;  2MJ7 A;  1NVP A;  1PCZ A;  2V8Q A;  3F0Z A;  3D7Q A;  1TUO A;  4EAG A;  1QNE A;  3ENC A;  2F7L A;  1JFI C;  1QN9 A;  2FKM X;  5IYB P;  2NOL A; 
#chains in the Genus database with same CATH homology
 2YH5 A;  5IYD P;  1M3Q A;  1EBM A;  3OSM A;  4TPS A;  3SNS A;  1QN3 A;  3KTU A;  2G30 A;  1YTF A;  1NH2 A;  1HU0 A;  1CDW A;  2MZ8 A;  1NGM A;  4ROE B;  4WZS D;  1RM1 A;  2NOF A;  1KYU A;  3KRM A;  5AN4 A;  2XHI A;  1AIS A;  1YQL A;  1LWW A;  2Z8U A;  3DPT A;  4PY5 A;  1LWY A;  4Q11 A;  1KY7 A;  2FGT A;  1VTL E;  4EJZ A;  2NOE A;  2D0B A;  2NOH A;  2IV9 A;  2NOB A;  2VJ0 A;  2NOI A;  1VOK A;  3DPU A;  2O3O A;  2NOZ A;  2IV8 A;  3OST A;  1W80 A;  3I0X A;  1KY6 A;  2HZS A;  3F10 A;  1YQM A;  1R4X A;  1N39 A;  1YQR A;  1TGH A;  1QNC A;  4ROC B;  1VOL B;  1B9K A;  3ASM A;  1MP9 A;  4DUL A;  1PZD A;  1UT7 A;  1QTP A;  1KYF A;  1C9B B;  3I0W A;  3N89 A;  1LWV A;  1YQK A;  1YTB A;  3ULX A;  2HZM A;  2LAE A;  1FN7 A;  1KYD A;  3OCI A;  2I5W A;  3HS9 A;  1VTO A;  1QN5 A;  1KO9 A;  1E42 A;  4B0A A;  1N3A A;  5IYC P;  1N3C A;  3H1Z A;  3HS8 A;  3EIK A;  3IH7 A;  1QN4 A;  1UT4 A;  1TBA B;  1QN8 A;  4EJY A;  1M3H A;  1QNB A;  3RPJ A;  3OC3 C;  1QN7 A;  2D0C A;  4ROD B;  4I8O A;  1D3U A;  1QN6 A;  2JOI A;  1QNA A;  1TBP A;  3VN5 A;  1QTS A;  2D0A A;  1NVP A;  2MJ7 A;  1PCZ A;  3F0Z A;  1QNE A;  1JFI C;  1QN9 A;  5IYB P;  2NOL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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