1PCZA

Structure of tata-binding protein
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
183
structure length
183
Chain Sequence
VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKYGLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TATA-BINDING PROTEIN
publication title The crystal structure of a hyperthermophilic archaeal TATA-box binding protein.
pubmed doi rcsb
source organism Pyrococcus woesei
molecule tags Dna binding protein
total genus 50
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature
pdb deposition date 1996-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1pczA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1pczA02
1VTOA 1NVPA 3VN5A 4B0AA 1QN7A 1QN8A 2MJ7A 1QN3A 2Z8UA 1QNCA 2VJ0A 3H1ZA 1KYFA 1TBPA 1JFIC 1QNAA 2D0AA 1QNEA 1W80A 1AISA 1VOLB 5IYBP 3HS8A 4PY5A 2IV9A 1D3UA 1PZDA 2IV8A 3EIKA 1YTBA 1KYDA 3HS9A 3ASMA 3OC3C 1NGMA 4WZSD 1TBAB 2D0CA 1QTPA 1C9BB 1VTLE 1MP9A 1KYUA 4ROEB 1B9KA 4RODB 1QNBA 1TGHA 1R4XA 1KY7A 1CDWA 5IYDP 5IYCP 1E42A 1RM1A 3OCIA 1QN9A 1PCZA 2D0BA 1QN5A 4ROCB 2G30A 1QN4A 1KY6A 1QN6A 1QTSA 1VOKA 1YTFA 1NH2A
chains in the Genus database with same CATH superfamily
2JHJA 1VTOA 2MJ7A 1QN3A 1N39A 3I0XA 4D7RA 1KYFA 1TBPA 2QREA 1M3HA 1WQAA 2QLVA 5IYBP 1V5SA 1D3UA 3DPUA 1YTBA 1T6AA 3ULXA 1LWWA 3I3WA 3TE5A 1N3CA 1K35A 2D0CA 2JOIA 2FKMX 1KYUA 2HL8A 4ROEB 1QNBA 3F0ZA 2OOXA 3OGDA 1EUVA 1KY7A 3PDKA 1XSZA 5IYCP 1KFIA 2FGTA 2Y8QA 3D4VA 2H4LX 2YH5A 1QN9A 2DKDA 4WX8A 3NA5A 3T4NA 2Y8LA 4C7PA 5F9CA 2HKPA 2YA3A 2F7LA 1QN6A 4DULA 3CW7A 2QR1A 1QN7A 5JMVD 1LXTA 3I0WA 4IL8A 4WXAA 1JFIC 1YQRA 3EAYA 1VOLB 2V8QA 5KL0A 1C4GA 4BJUA 1PZDA 2IV8A 2FUVA 4EALA 1LWVA 2O3OA 1KYDA 3BKQX 3KTUA 2DKCA 1WJWA 2QRDA 3OC3C 2H5AX 2EHBD 3OSMA 5EPCA 2NOFA 3OSEA 3CVSA 1B9KA 2NOEA 1CDWA 5IYDP 1E42A 1UL7A 1UT7A 2ZFDB 1YQMA 3SNSA 2NOHA 1KO9A 1Q9UA 2Z0FA 3C04A 2D0BA 3OLPA 4I8OA 1QN5A 4ROCB 1PVSA 1KY6A 1KFQA 2NOBA 1TBAB 1UT4A 2DKAA 2R5XA 2HZMA 1YQKA 1QN8A 3UW2A 2NOIA 3F10A 4CFFA 2Z8UA 1QNCA 1QNAA 2OOYA 4EJZA 1QNEA 3DPTA 4TPSA 5BMPA 1PCMX 4QG5A 1AISA 1P5GX 4PY5A 2IV9A 2JPIA 3KRMA 1PCJX 2NLVA 3N89A 4EAIA 4WZSD 1NGMA 4D7QA 2V92A 1M3QA 1MP9A 2NOLA 1TGHA 4Q11A 1FN7A 2PWWA 2NVMA 1K2YX 1N3AA 3OH6A 3OCIA 3CWAA 4EAGA 3PMGA 1MPGA 5HSHA 3IH7A 5JN5A 1QN4A 3RSMA 1QTSA 1YQLA 1YTFA 2QRCA 1C47A 3VN5A 4B0AA 1NVPA 4EJYA 2JHNA 3CVTA 2VJ0A 3ENOC 3H1ZA 5AN4A 4EAKA 1DIZA 2D0AA 2MZ8A 1W80A 2NWVA 2V9JA 1J3MA 1VKLA 2FKFA 3HS8A 2XHIA 3EIKA 1HU0A 3HS9A 5BMNA 1LWYA 3OSTA 2I5WA 3ASMA 1EBMA 4MRQA 1QTPA 4EAJA 1C9BB 1VTLE 2LAEA 1TUOA 4RODB 3TDHA 1R4XA 2HZSA 3RPJA 3OH9A 3ENCA 2NOZA 3CWUA 1M5Q1 1RM1A 1PCZA 4HJHA 1JDYA 1P5DX 3CWSA 2G30A 2HL9A 3CWTA 3D7QA 1VOKA 1NH2A
chains in the Genus database with same CATH topology
1VTOA 2MJ7A 1QN3A 1N39A 3I0XA 1KYFA 1TBPA 1M3HA 5IYBP 1D3UA 3DPUA 1YTBA 3ULXA 1LWWA 1N3CA 2D0CA 2JOIA 4ROEB 1KYUA 1QNBA 3F0ZA 1KY7A 5IYCP 2FGTA 2YH5A 1QN9A 1QN6A 4DULA 1QN7A 3I0WA 1JFIC 1YQRA 1VOLB 1PZDA 2IV8A 1LWVA 2O3OA 1KYDA 3KTUA 3OC3C 3OSMA 2NOFA 1B9KA 2NOEA 1CDWA 5IYDP 1UT7A 1E42A 2NOHA 1YQMA 3SNSA 1KO9A 4I8OA 2D0BA 1QN5A 4ROCB 1KY6A 2NOBA 1TBAB 1UT4A 1YQKA 1QN8A 2HZMA 2NOIA 3F10A 2Z8UA 1QNCA 1QNAA 4EJZA 1QNEA 3DPTA 4TPSA 1AISA 4PY5A 2IV9A 3KRMA 3N89A 1NGMA 4WZSD 1M3QA 1MP9A 2NOLA 1TGHA 4Q11A 1FN7A 1N3AA 3OCIA 3IH7A 1QN4A 1QTSA 1YQLA 1YTFA 1NVPA 3VN5A 4B0AA 4EJYA 2VJ0A 3H1ZA 5AN4A 2D0AA 2MZ8A 1W80A 3HS8A 2XHIA 3EIKA 1HU0A 3HS9A 1LWYA 3OSTA 2I5WA 3ASMA 1EBMA 1QTPA 1C9BB 1VTLE 2LAEA 4RODB 1R4XA 2HZSA 3RPJA 2NOZA 1RM1A 1PCZA 2G30A 1VOKA 1NH2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VTO A;  1NVP A;  3VN5 A;  4B0A A;  1QN7 A;  1QN8 A;  2MJ7 A;  1QN3 A;  2Z8U A;  1QNC A;  2VJ0 A;  3H1Z A;  1KYF A;  1TBP A;  1JFI C;  1QNA A;  2D0A A;  1QNE A;  1W80 A;  1AIS A;  1VOL B;  5IYB P;  3HS8 A;  4PY5 A;  2IV9 A;  1D3U A;  1PZD A;  2IV8 A;  3EIK A;  1YTB A;  1KYD A;  3HS9 A;  3ASM A;  3OC3 C;  1NGM A;  4WZS D;  1TBA B;  2D0C A;  1QTP A;  1C9B B;  1VTL E;  1MP9 A;  1KYU A;  4ROE B;  1B9K A;  4ROD B;  1QNB A;  1TGH A;  1R4X A;  1KY7 A;  1CDW A;  5IYD P;  5IYC P;  1E42 A;  1RM1 A;  3OCI A;  1QN9 A;  1PCZ A;  2D0B A;  1QN5 A;  4ROC B;  2G30 A;  1QN4 A;  1KY6 A;  1QN6 A;  1QTS A;  1VOK A;  1YTF A;  1NH2 A; 
#chains in the Genus database with same CATH topology
 2JHJ A;  1VTO A;  2MJ7 A;  1QN3 A;  1N39 A;  3I0X A;  4D7R A;  1KYF A;  1TBP A;  2QRE A;  1M3H A;  1WQA A;  2QLV A;  5IYB P;  1V5S A;  1D3U A;  3DPU A;  1YTB A;  1T6A A;  3ULX A;  1LWW A;  3I3W A;  3TE5 A;  1N3C A;  1K35 A;  2D0C A;  2JOI A;  2FKM X;  1KYU A;  2HL8 A;  4ROE B;  1QNB A;  3F0Z A;  2OOX A;  3OGD A;  1EUV A;  1KY7 A;  3PDK A;  1XSZ A;  5IYC P;  1KFI A;  2FGT A;  2Y8Q A;  3D4V A;  2H4L X;  2YH5 A;  1QN9 A;  2DKD A;  4WX8 A;  3NA5 A;  3T4N A;  2Y8L A;  4C7P A;  5F9C A;  2HKP A;  2YA3 A;  2F7L A;  1QN6 A;  4DUL A;  3CW7 A;  2QR1 A;  1QN7 A;  5JMV D;  1LXT A;  3I0W A;  4IL8 A;  4WXA A;  1JFI C;  1YQR A;  3EAY A;  1VOL B;  2V8Q A;  5KL0 A;  1C4G A;  4BJU A;  1PZD A;  2IV8 A;  2FUV A;  4EAL A;  1LWV A;  2O3O A;  1KYD A;  3BKQ X;  3KTU A;  2DKC A;  1WJW A;  2QRD A;  3OC3 C;  2H5A X;  2EHB D;  3OSM A;  5EPC A;  2NOF A;  3OSE A;  3CVS A;  1B9K A;  2NOE A;  1CDW A;  5IYD P;  1E42 A;  1UL7 A;  1UT7 A;  2ZFD B;  1YQM A;  3SNS A;  2NOH A;  1KO9 A;  1Q9U A;  2Z0F A;  3C04 A;  2D0B A;  3OLP A;  4I8O A;  1QN5 A;  4ROC B;  1PVS A;  1KY6 A;  1KFQ A;  2NOB A;  1TBA B;  1UT4 A;  2DKA A;  2R5X A;  2HZM A;  1YQK A;  1QN8 A;  3UW2 A;  2NOI A;  3F10 A;  4CFF A;  2Z8U A;  1QNC A;  1QNA A;  2OOY A;  4EJZ A;  1QNE A;  3DPT A;  4TPS A;  5BMP A;  1PCM X;  4QG5 A;  1AIS A;  1P5G X;  4PY5 A;  2IV9 A;  2JPI A;  3KRM A;  1PCJ X;  2NLV A;  3N89 A;  4EAI A;  4WZS D;  1NGM A;  4D7Q A;  2V92 A;  1M3Q A;  1MP9 A;  2NOL A;  1TGH A;  4Q11 A;  1FN7 A;  2PWW A;  2NVM A;  1K2Y X;  1N3A A;  3OH6 A;  3OCI A;  3CWA A;  4EAG A;  3PMG A;  1MPG A;  5HSH A;  3IH7 A;  5JN5 A;  1QN4 A;  3RSM A;  1QTS A;  1YQL A;  1YTF A;  2QRC A;  1C47 A;  3VN5 A;  4B0A A;  1NVP A;  4EJY A;  2JHN A;  3CVT A;  2VJ0 A;  3ENO C;  3H1Z A;  5AN4 A;  4EAK A;  1DIZ A;  2D0A A;  2MZ8 A;  1W80 A;  2NWV A;  2V9J A;  1J3M A;  1VKL A;  2FKF A;  3HS8 A;  2XHI A;  3EIK A;  1HU0 A;  3HS9 A;  5BMN A;  1LWY A;  3OST A;  2I5W A;  3ASM A;  1EBM A;  4MRQ A;  1QTP A;  4EAJ A;  1C9B B;  1VTL E;  2LAE A;  1TUO A;  4ROD B;  3TDH A;  1R4X A;  2HZS A;  3RPJ A;  3OH9 A;  3ENC A;  2NOZ A;  3CWU A;  1M5Q 1;  1RM1 A;  1PCZ A;  4HJH A;  1JDY A;  1P5D X;  3CWS A;  2G30 A;  2HL9 A;  3CWT A;  3D7Q A;  1VOK A;  1NH2 A; 
#chains in the Genus database with same CATH homology
 1VTO A;  2MJ7 A;  1QN3 A;  1N39 A;  3I0X A;  1KYF A;  1TBP A;  1M3H A;  5IYB P;  1D3U A;  3DPU A;  1YTB A;  3ULX A;  1LWW A;  1N3C A;  2D0C A;  2JOI A;  4ROE B;  1KYU A;  1QNB A;  3F0Z A;  1KY7 A;  5IYC P;  2FGT A;  2YH5 A;  1QN9 A;  1QN6 A;  4DUL A;  1QN7 A;  3I0W A;  1JFI C;  1YQR A;  1VOL B;  1PZD A;  2IV8 A;  1LWV A;  2O3O A;  1KYD A;  3KTU A;  3OC3 C;  3OSM A;  2NOF A;  1B9K A;  2NOE A;  1CDW A;  5IYD P;  1UT7 A;  1E42 A;  2NOH A;  1YQM A;  3SNS A;  1KO9 A;  4I8O A;  2D0B A;  1QN5 A;  4ROC B;  1KY6 A;  2NOB A;  1TBA B;  1UT4 A;  1YQK A;  1QN8 A;  2HZM A;  2NOI A;  3F10 A;  2Z8U A;  1QNC A;  1QNA A;  4EJZ A;  1QNE A;  3DPT A;  4TPS A;  1AIS A;  4PY5 A;  2IV9 A;  3KRM A;  3N89 A;  1NGM A;  4WZS D;  1M3Q A;  1MP9 A;  2NOL A;  1TGH A;  4Q11 A;  1FN7 A;  1N3A A;  3OCI A;  3IH7 A;  1QN4 A;  1QTS A;  1YQL A;  1YTF A;  1NVP A;  3VN5 A;  4B0A A;  4EJY A;  2VJ0 A;  3H1Z A;  5AN4 A;  2D0A A;  2MZ8 A;  1W80 A;  3HS8 A;  2XHI A;  3EIK A;  1HU0 A;  3HS9 A;  1LWY A;  3OST A;  2I5W A;  3ASM A;  1EBM A;  1QTP A;  1C9B B;  1VTL E;  2LAE A;  4ROD B;  1R4X A;  2HZS A;  3RPJ A;  2NOZ A;  1RM1 A;  1PCZ A;  2G30 A;  1VOK A;  1NH2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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