1PD7A

Extended sid of mad1 bound to the pah2 domain of msin3b
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
85
structure length
85
Chain Sequence
ESDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Sin3b protein
publication title Extension of the binding motif of the sin3 interacting domain of the mad family proteins(,).
pubmed rcsb
source organism Mus musculus
total genus 19
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2003-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02671 PAH Paired amphipathic helix repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1160.11 Mainly Alpha Up-down Bundle Paired amphipathic helix 2 (pah2 repeat) Paired amphipathic helix 1pd7A00
2RMRA 1PD7A 2CZYA 2LD7B 1G1EB 1E91A 2RMSA 2L9SB 2F05A 1S5QB 1S5RB 2CR7A
chains in the Genus database with same CATH superfamily
1PD7A 2RMSA 4FQNA 4YKCA 2CZYA 1G1EB 2KBQA 1S5RB 2LD7B 1E91A 2L9SB 1S5QB 3K1RA 5F3XA 2RMRA 2LSRA 2KBRA 4YKDA 2F05A 4Y5OA 4YL6A 2CR7A
chains in the Genus database with same CATH topology
2RMRA 1PD7A 2CZYA 2LD7B 1G1EB 1E91A 2RMSA 2L9SB 2F05A 1S5QB 1S5RB 2CR7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RMR A;  1PD7 A;  2CZY A;  2LD7 B;  1G1E B;  1E91 A;  2RMS A;  2L9S B;  2F05 A;  1S5Q B;  1S5R B;  2CR7 A; 
#chains in the Genus database with same CATH topology
 1PD7 A;  2RMS A;  4FQN A;  4YKC A;  2CZY A;  1G1E B;  2KBQ A;  1S5R B;  2LD7 B;  1E91 A;  2L9S B;  1S5Q B;  3K1R A;  5F3X A;  2RMR A;  2LSR A;  2KBR A;  4YKD A;  2F05 A;  4Y5O A;  4YL6 A;  2CR7 A; 
#chains in the Genus database with same CATH homology
 2RMR A;  1PD7 A;  2CZY A;  2LD7 B;  1G1E B;  1E91 A;  2RMS A;  2L9S B;  2F05 A;  1S5Q B;  1S5R B;  2CR7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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