1PEMA

Ribonucleotide reductase protein r1e from salmonella typhimurium
Total Genus 243
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
243
sequence length
687
structure length
682
Chain Sequence
TMDYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of the large subunit of class Ib ribonucleotide reductase from Salmonella typhimurium and its complexes with allosteric effectors.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Salmonella typhimurium
molecule keywords Ribonucleoside-diphosphate reductase 2 alpha chain
total genus 243
structure length 682
sequence length 687
ec nomenclature ec 1.17.4.1: Ribonucleoside-diphosphate reductase.
pdb deposition date 2003-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00317 Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
A PF02867 Ribonuc_red_lgC Ribonucleotide reductase, barrel domain
A PF08343 RNR_N Ribonucleotide reductase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1650.20 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1 50s Ribosomal Protein L19e, Chain O, domain 1 1pemA03
3.20.70.20 Alpha Beta Alpha-Beta Barrel Anaerobic Ribonucleotide-triphosphate Reductase Large Chain Anaerobic Ribonucleotide-triphosphate Reductase Large Chain 1pemA02
2XAVA 5R1RA 5CNUA 1H7AA 1QHMA 1R9DA 2CVWA 2CVYA 2BQ1E 3S87A 1HK8A 2XAXA 2XAYA 3O0QA 2CVXA 1PEUA 4MTJA 2PFLA 5CNVA 1XJJA 1MZOA 2HA9A 2CVSA 2WGHA 2X0XA 3S8CA 1CM5A 1XJNA 1RLRA 3TBAA 4X3VA 3O0NA 3R1RA 1ZYZA 2Y8NA 1R8WA 2F3OA 1L1LA 1R1RA 7R1RA 2CVUA 3K8TA 1H79A 1ZZDA 3PFLA 5CNSA 1H7BA 2XAKA 3HNDA 3TB9A 1H17A 1XJFA 3RSRA 2R1RA 2CVVA 2ZLFA 5CNTA 3HNFA 2CVTA 3HNCA 1XJEA 3S8AA 4ERMA 1XJKA 2XAZA 2XAPA 1XJGA 2XAWA 3O0OA 1PEQA 2YAJA 2ZLGA 4R1RA 2XO5A 1H18A 2EUDA 1PEMA 1H78A 1H16A 1XJMA 1PEOA 3S8BA 6R1RA 3HNEA 2XO4A
chains in the Genus database with same CATH superfamily
5FAUA 2XAVA 5R1RA 1KD1Q 5CNUA 1H7AA 1VQ8P 1QHMA 1R9DA 2CVWA 1VQ9P 2CVYA 2BQ1E 3CCRP 3CMAP 5A0ZA 1VQ4P 3G4SP 3S87A 1HK8A 1QVFO 1VQLP 5A0UA 1VQPP 2XAXA 1YIJP 2XAYA 2CVXA 3O0QA 1VQNP 1PEUA 1YJWP 4MTJA 1QVGO 2PFLA 5CNVA 1K73Q 1MZOA 1XJJA 2CVSA 2HA9A 1M90Q 2WGHA 2X0XA 3S8CA 1VQ5P 1CM5A 5FAWA 1XJNA 1RLRA 1Q82Q 1VQ7P 3TBAA 1K8AQ 4X3VA 2OTJP 3CCLP 3O0NA 3CPWO 3R1RA 1ZYZA 3CMEP 2Y8NA 2QA4P 1YHQP 5KDPA 3CC7P 1R8WA 1L1LA 1R1RA 2F3OA 2QEXP 3CCSP 7R1RA 2CVUA 3CCJP 3K8TA 1VQ6P 1H79A 3CCMP 1ZZDA 3PFLA 5CNSA 1H7BA 1YJNP 2XAKA 3HNDA 1M1KQ 1VQMP 3CC2P 1Q81Q 3CCUP 1W2BO 3TB9A 3I56P 1H17A 1XJFA 3RSRA 2R1RA 1N8RQ 5FAVA 3OW2O 1YJ9P 2CVVA 2ZLFA 5CNTA 1VQKP 1JJ2O 3CCQP 1Q86Q 1KC8Q 2CVTA 3HNFA 3HNCA 1XJEA 3S8AA 4ERMA 1XJKA 2XAZA 2XAPA 3CC4P 1YITP 1YI2P 5FAYA 1S72P 1Q7YQ 1NJIQ 1XJGA 3I55P 2XAWA 1KQSO 3O0OA 3G6EP 1PEQA 2YAJA 2ZLGA 4R1RA 2XO5A 1H18A 3CCVP 2EUDA 1PEMA 1K9MQ 1H78A 1H16A 3CCEP 2OTLP 3CD6P 3CXCO 1XJMA 3G71P 1VQOP 1PEOA 3S8BA 6R1RA 3HNEA 2XO4A
chains in the Genus database with same CATH topology
5FAUA 2XAVA 5R1RA 1KD1Q 5CNUA 1H7AA 1VQ8P 1QHMA 1R9DA 2CVWA 1VQ9P 2CVYA 2BQ1E 3CCRP 3CMAP 5A0ZA 1VQ4P 3G4SP 3S87A 1HK8A 1QVFO 1VQLP 5A0UA 1VQPP 2XAXA 1YIJP 2XAYA 2CVXA 3O0QA 1VQNP 1PEUA 1YJWP 4MTJA 1QVGO 2PFLA 5CNVA 1K73Q 1MZOA 1XJJA 2CVSA 2HA9A 1M90Q 2WGHA 2X0XA 3S8CA 1VQ5P 1CM5A 5FAWA 1XJNA 1RLRA 1Q82Q 1VQ7P 3TBAA 1K8AQ 4X3VA 2OTJP 3CCLP 3O0NA 3CPWO 3R1RA 1ZYZA 3CMEP 2Y8NA 2QA4P 1YHQP 5KDPA 3CC7P 1R8WA 1L1LA 1R1RA 2F3OA 2QEXP 3CCSP 7R1RA 2CVUA 3CCJP 3K8TA 1VQ6P 1H79A 3CCMP 1ZZDA 3PFLA 5CNSA 1H7BA 1YJNP 2XAKA 3HNDA 1M1KQ 1VQMP 3CC2P 1Q81Q 3CCUP 1W2BO 3TB9A 3I56P 1H17A 1XJFA 3RSRA 2R1RA 1N8RQ 5FAVA 3OW2O 1YJ9P 2CVVA 2ZLFA 5CNTA 1VQKP 1JJ2O 3CCQP 1Q86Q 1KC8Q 2CVTA 3HNFA 3HNCA 1XJEA 3S8AA 4ERMA 1XJKA 2XAZA 2XAPA 3CC4P 1YITP 1YI2P 5FAYA 1S72P 1Q7YQ 1NJIQ 1XJGA 3I55P 2XAWA 1KQSO 3O0OA 3G6EP 1PEQA 2YAJA 2ZLGA 4R1RA 2XO5A 1H18A 3CCVP 2EUDA 1PEMA 1K9MQ 1H78A 1H16A 3CCEP 2OTLP 3CD6P 3CXCO 1XJMA 3G71P 1VQOP 1PEOA 3S8BA 6R1RA 3HNEA 2XO4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XAV A;  5R1R A;  5CNU A;  1H7A A;  1QHM A;  1R9D A;  2CVW A;  2CVY A;  2BQ1 E;  3S87 A;  1HK8 A;  2XAX A;  2XAY A;  3O0Q A;  2CVX A;  1PEU A;  4MTJ A;  2PFL A;  5CNV A;  1XJJ A;  1MZO A;  2HA9 A;  2CVS A;  2WGH A;  2X0X A;  3S8C A;  1CM5 A;  1XJN A;  1RLR A;  3TBA A;  4X3V A;  3O0N A;  3R1R A;  1ZYZ A;  2Y8N A;  1R8W A;  2F3O A;  1L1L A;  1R1R A;  7R1R A;  2CVU A;  3K8T A;  1H79 A;  1ZZD A;  3PFL A;  5CNS A;  1H7B A;  2XAK A;  3HND A;  3TB9 A;  1H17 A;  1XJF A;  3RSR A;  2R1R A;  2CVV A;  2ZLF A;  5CNT A;  3HNF A;  2CVT A;  3HNC A;  1XJE A;  3S8A A;  4ERM A;  1XJK A;  2XAZ A;  2XAP A;  1XJG A;  2XAW A;  3O0O A;  1PEQ A;  2YAJ A;  2ZLG A;  4R1R A;  2XO5 A;  1H18 A;  2EUD A;  1PEM A;  1H78 A;  1H16 A;  1XJM A;  1PEO A;  3S8B A;  6R1R A;  3HNE A;  2XO4 A; 
#chains in the Genus database with same CATH topology
 5FAU A;  2XAV A;  5R1R A;  1KD1 Q;  5CNU A;  1H7A A;  1VQ8 P;  1QHM A;  1R9D A;  2CVW A;  1VQ9 P;  2CVY A;  2BQ1 E;  3CCR P;  3CMA P;  5A0Z A;  1VQ4 P;  3G4S P;  3S87 A;  1HK8 A;  1QVF O;  1VQL P;  5A0U A;  1VQP P;  2XAX A;  1YIJ P;  2XAY A;  2CVX A;  3O0Q A;  1VQN P;  1PEU A;  1YJW P;  4MTJ A;  1QVG O;  2PFL A;  5CNV A;  1K73 Q;  1MZO A;  1XJJ A;  2CVS A;  2HA9 A;  1M90 Q;  2WGH A;  2X0X A;  3S8C A;  1VQ5 P;  1CM5 A;  5FAW A;  1XJN A;  1RLR A;  1Q82 Q;  1VQ7 P;  3TBA A;  1K8A Q;  4X3V A;  2OTJ P;  3CCL P;  3O0N A;  3CPW O;  3R1R A;  1ZYZ A;  3CME P;  2Y8N A;  2QA4 P;  1YHQ P;  5KDP A;  3CC7 P;  1R8W A;  1L1L A;  1R1R A;  2F3O A;  2QEX P;  3CCS P;  7R1R A;  2CVU A;  3CCJ P;  3K8T A;  1VQ6 P;  1H79 A;  3CCM P;  1ZZD A;  3PFL A;  5CNS A;  1H7B A;  1YJN P;  2XAK A;  3HND A;  1M1K Q;  1VQM P;  3CC2 P;  1Q81 Q;  3CCU P;  1W2B O;  3TB9 A;  3I56 P;  1H17 A;  1XJF A;  3RSR A;  2R1R A;  1N8R Q;  5FAV A;  3OW2 O;  1YJ9 P;  2CVV A;  2ZLF A;  5CNT A;  1VQK P;  1JJ2 O;  3CCQ P;  1Q86 Q;  1KC8 Q;  2CVT A;  3HNF A;  3HNC A;  1XJE A;  3S8A A;  4ERM A;  1XJK A;  2XAZ A;  2XAP A;  3CC4 P;  1YIT P;  1YI2 P;  5FAY A;  1S72 P;  1Q7Y Q;  1NJI Q;  1XJG A;  3I55 P;  2XAW A;  1KQS O;  3O0O A;  3G6E P;  1PEQ A;  2YAJ A;  2ZLG A;  4R1R A;  2XO5 A;  1H18 A;  3CCV P;  2EUD A;  1PEM A;  1K9M Q;  1H78 A;  1H16 A;  3CCE P;  2OTL P;  3CD6 P;  3CXC O;  1XJM A;  3G71 P;  1VQO P;  1PEO A;  3S8B A;  6R1R A;  3HNE A;  2XO4 A; 
#chains in the Genus database with same CATH homology
 5FAU A;  2XAV A;  5R1R A;  1KD1 Q;  5CNU A;  1H7A A;  1VQ8 P;  1QHM A;  1R9D A;  2CVW A;  1VQ9 P;  2CVY A;  2BQ1 E;  3CCR P;  3CMA P;  5A0Z A;  1VQ4 P;  3G4S P;  3S87 A;  1HK8 A;  1QVF O;  1VQL P;  5A0U A;  1VQP P;  2XAX A;  1YIJ P;  2XAY A;  2CVX A;  3O0Q A;  1VQN P;  1PEU A;  1YJW P;  4MTJ A;  1QVG O;  2PFL A;  5CNV A;  1K73 Q;  1MZO A;  1XJJ A;  2CVS A;  2HA9 A;  1M90 Q;  2WGH A;  2X0X A;  3S8C A;  1VQ5 P;  1CM5 A;  5FAW A;  1XJN A;  1RLR A;  1Q82 Q;  1VQ7 P;  3TBA A;  1K8A Q;  4X3V A;  2OTJ P;  3CCL P;  3O0N A;  3CPW O;  3R1R A;  1ZYZ A;  3CME P;  2Y8N A;  2QA4 P;  1YHQ P;  5KDP A;  3CC7 P;  1R8W A;  1L1L A;  1R1R A;  2F3O A;  2QEX P;  3CCS P;  7R1R A;  2CVU A;  3CCJ P;  3K8T A;  1VQ6 P;  1H79 A;  3CCM P;  1ZZD A;  3PFL A;  5CNS A;  1H7B A;  1YJN P;  2XAK A;  3HND A;  1M1K Q;  1VQM P;  3CC2 P;  1Q81 Q;  3CCU P;  1W2B O;  3TB9 A;  3I56 P;  1H17 A;  1XJF A;  3RSR A;  2R1R A;  1N8R Q;  5FAV A;  3OW2 O;  1YJ9 P;  2CVV A;  2ZLF A;  5CNT A;  1VQK P;  1JJ2 O;  3CCQ P;  1Q86 Q;  1KC8 Q;  2CVT A;  3HNF A;  3HNC A;  1XJE A;  3S8A A;  4ERM A;  1XJK A;  2XAZ A;  2XAP A;  3CC4 P;  1YIT P;  1YI2 P;  5FAY A;  1S72 P;  1Q7Y Q;  1NJI Q;  1XJG A;  3I55 P;  2XAW A;  1KQS O;  3O0O A;  3G6E P;  1PEQ A;  2YAJ A;  2ZLG A;  4R1R A;  2XO5 A;  1H18 A;  3CCV P;  2EUD A;  1PEM A;  1K9M Q;  1H78 A;  1H16 A;  3CCE P;  2OTL P;  3CD6 P;  3CXC O;  1XJM A;  3G71 P;  1VQO P;  1PEO A;  3S8B A;  6R1R A;  3HNE A;  2XO4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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