1PEQA

Ribonucleotide reductase protein r1e from salmonella typhimurium
Total Genus 244
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
244
sequence length
692
structure length
679
Chain Sequence
RVMQETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQGAGAVYLHAHHPDILRFLDTKRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Ribonucleoside-diphosphate reductase 2 alpha chain
publication title Structure of the large subunit of class Ib ribonucleotide reductase from Salmonella typhimurium and its complexes with allosteric effectors.
pubmed doi rcsb
source organism Salmonella typhimurium
total genus 244
structure length 679
sequence length 692
ec nomenclature ec 1.17.4.1: Ribonucleoside-diphosphate reductase.
pdb deposition date 2003-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00317 Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
A PF02867 Ribonuc_red_lgC Ribonucleotide reductase, barrel domain
A PF08343 RNR_N Ribonucleotide reductase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1650.20 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1 50s Ribosomal Protein L19e, Chain O, domain 1 1peqA03
3.20.70.20 Alpha Beta Alpha-Beta Barrel Anaerobic Ribonucleotide-triphosphate Reductase Large Chain Anaerobic Ribonucleotide-triphosphate Reductase Large Chain 1peqA02
1XJGA 2F3OA 1CM5A 2XO5A 2ZLFA 3S87A 2XAPA 1H78A 5R1RA 2CVVA 1PEMA 5CNTA 1H7AA 3PFLA 3R1RA 3TB9A 1XJMA 1XJFA 3S8CA 3O0QA 1XJJA 2PFLA 1PEUA 2CVXA 7R1RA 1ZZDA 4X3VA 1H79A 1XJNA 2XAKA 3HNCA 3O0OA 3TBAA 1PEQA 3K8TA 4ERMA 3HNDA 2XAZA 3S8BA 5CNSA 1H16A 2ZLGA 1MZOA 6R1RA 1XJEA 1R8WA 2CVSA 2XAWA 5CNUA 2CVWA 2Y8NA 1H7BA 1R1RA 2X0XA 1XJKA 2WGHA 2EUDA 3O0NA 4MTJA 1HK8A 3HNEA 4R1RA 5CNVA 3RSRA 1PEOA 3S8AA 3HNFA 2YAJA 2CVTA 2XAXA 1H18A 1RLRA 2XO4A 1QHMA 1R9DA 2XAVA 1L1LA 2XAYA 2BQ1E 2CVYA 1H17A 2CVUA 2HA9A 1ZYZA 2R1RA
chains in the Genus database with same CATH superfamily
1KQSO 1XJGA 3G6EP 5FAWA 2F3OA 1CM5A 2XO5A 2ZLFA 3S87A 1JJ2O 2XAPA 3G71P 1K8AQ 1H78A 3CCQP 5R1RA 1YIJP 1PEMA 2CVVA 1H7AA 3PFLA 2QEXP 3R1RA 5CNTA 3TB9A 1XJMA 1XJFA 3S8CA 3O0QA 1XJJA 3CCLP 1VQ5P 3I55P 2PFLA 1VQMP 1PEUA 2CVXA 7R1RA 1ZZDA 5A0UA 3G4SP 4X3VA 1Q86Q 1H79A 5A0ZA 1KC8Q 1VQ4P 1XJNA 5FAUA 1QVFO 3CCJP 2XAKA 3HNCA 3O0OA 1M90Q 1VQ7P 1M1KQ 1K9MQ 1YJ9P 3TBAA 3OW2O 1PEQA 3CMAP 3K8TA 4ERMA 3HNDA 2XAZA 3S8BA 5CNSA 1H16A 2ZLGA 1VQ6P 1MZOA 6R1RA 1VQPP 1XJEA 1R8WA 3CCRP 2CVSA 3CD6P 2XAWA 1NJIQ 5CNUA 2CVWA 1W2BO 5FAYA 1QVGO 1VQ8P 2Y8NA 1H7BA 1R1RA 3CCVP 2X0XA 1XJKA 1KD1Q 2WGHA 2EUDA 1YHQP 3O0NA 3CCUP 4MTJA 1HK8A 1VQ9P 3HNEA 1VQKP 3I56P 4R1RA 1VQOP 2QA4P 1YITP 1Q82Q 3CC7P 5CNVA 3RSRA 1PEOA 3S8AA 3HNFA 1YI2P 2YAJA 2CVTA 2XAXA 1H18A 1N8RQ 1RLRA 2XO4A 3CXCO 5FAVA 1QHMA 1R9DA 1Q81Q 5KDPA 3CPWO 1YJNP 2OTLP 1YJWP 3CMEP 2XAVA 1L1LA 3CCMP 3CC4P 1S72P 2XAYA 1Q7YQ 1VQNP 2BQ1E 3CC2P 2OTJP 1K73Q 1VQLP 2CVYA 1H17A 2CVUA 2HA9A 3CCEP 3CCSP 1ZYZA 2R1RA
chains in the Genus database with same CATH topology
1KQSO 1XJGA 3G6EP 5FAWA 2F3OA 1CM5A 2XO5A 2ZLFA 3S87A 1JJ2O 2XAPA 3G71P 1K8AQ 1H78A 3CCQP 5R1RA 1YIJP 1PEMA 2CVVA 1H7AA 3PFLA 2QEXP 3R1RA 5CNTA 3TB9A 1XJMA 1XJFA 3S8CA 3O0QA 1XJJA 3CCLP 1VQ5P 3I55P 2PFLA 1VQMP 1PEUA 2CVXA 7R1RA 1ZZDA 5A0UA 3G4SP 4X3VA 1Q86Q 1H79A 5A0ZA 1KC8Q 1VQ4P 1XJNA 5FAUA 1QVFO 3CCJP 2XAKA 3HNCA 3O0OA 1M90Q 1VQ7P 1M1KQ 1K9MQ 1YJ9P 3TBAA 3OW2O 1PEQA 3CMAP 3K8TA 4ERMA 3HNDA 2XAZA 3S8BA 5CNSA 1H16A 2ZLGA 1VQ6P 1MZOA 6R1RA 1VQPP 1XJEA 1R8WA 3CCRP 2CVSA 3CD6P 2XAWA 1NJIQ 5CNUA 2CVWA 1W2BO 5FAYA 1QVGO 1VQ8P 2Y8NA 1H7BA 1R1RA 3CCVP 2X0XA 1XJKA 1KD1Q 2WGHA 2EUDA 1YHQP 3O0NA 3CCUP 4MTJA 1HK8A 1VQ9P 3HNEA 1VQKP 3I56P 4R1RA 1VQOP 2QA4P 1YITP 1Q82Q 3CC7P 5CNVA 3RSRA 1PEOA 3S8AA 3HNFA 1YI2P 2YAJA 2CVTA 2XAXA 1H18A 1N8RQ 1RLRA 2XO4A 3CXCO 5FAVA 1QHMA 1R9DA 1Q81Q 5KDPA 3CPWO 1YJNP 2OTLP 1YJWP 3CMEP 2XAVA 1L1LA 3CCMP 3CC4P 1S72P 2XAYA 1Q7YQ 1VQNP 2BQ1E 3CC2P 2OTJP 1K73Q 1VQLP 2CVYA 1H17A 2CVUA 2HA9A 3CCEP 3CCSP 1ZYZA 2R1RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XJG A;  2F3O A;  1CM5 A;  2XO5 A;  2ZLF A;  3S87 A;  2XAP A;  1H78 A;  5R1R A;  2CVV A;  1PEM A;  5CNT A;  1H7A A;  3PFL A;  3R1R A;  3TB9 A;  1XJM A;  1XJF A;  3S8C A;  3O0Q A;  1XJJ A;  2PFL A;  1PEU A;  2CVX A;  7R1R A;  1ZZD A;  4X3V A;  1H79 A;  1XJN A;  2XAK A;  3HNC A;  3O0O A;  3TBA A;  1PEQ A;  3K8T A;  4ERM A;  3HND A;  2XAZ A;  3S8B A;  5CNS A;  1H16 A;  2ZLG A;  1MZO A;  6R1R A;  1XJE A;  1R8W A;  2CVS A;  2XAW A;  5CNU A;  2CVW A;  2Y8N A;  1H7B A;  1R1R A;  2X0X A;  1XJK A;  2WGH A;  2EUD A;  3O0N A;  4MTJ A;  1HK8 A;  3HNE A;  4R1R A;  5CNV A;  3RSR A;  1PEO A;  3S8A A;  3HNF A;  2YAJ A;  2CVT A;  2XAX A;  1H18 A;  1RLR A;  2XO4 A;  1QHM A;  1R9D A;  2XAV A;  1L1L A;  2XAY A;  2BQ1 E;  2CVY A;  1H17 A;  2CVU A;  2HA9 A;  1ZYZ A;  2R1R A; 
#chains in the Genus database with same CATH topology
 1KQS O;  1XJG A;  3G6E P;  5FAW A;  2F3O A;  1CM5 A;  2XO5 A;  2ZLF A;  3S87 A;  1JJ2 O;  2XAP A;  3G71 P;  1K8A Q;  1H78 A;  3CCQ P;  5R1R A;  1YIJ P;  1PEM A;  2CVV A;  1H7A A;  3PFL A;  2QEX P;  3R1R A;  5CNT A;  3TB9 A;  1XJM A;  1XJF A;  3S8C A;  3O0Q A;  1XJJ A;  3CCL P;  1VQ5 P;  3I55 P;  2PFL A;  1VQM P;  1PEU A;  2CVX A;  7R1R A;  1ZZD A;  5A0U A;  3G4S P;  4X3V A;  1Q86 Q;  1H79 A;  5A0Z A;  1KC8 Q;  1VQ4 P;  1XJN A;  5FAU A;  1QVF O;  3CCJ P;  2XAK A;  3HNC A;  3O0O A;  1M90 Q;  1VQ7 P;  1M1K Q;  1K9M Q;  1YJ9 P;  3TBA A;  3OW2 O;  1PEQ A;  3CMA P;  3K8T A;  4ERM A;  3HND A;  2XAZ A;  3S8B A;  5CNS A;  1H16 A;  2ZLG A;  1VQ6 P;  1MZO A;  6R1R A;  1VQP P;  1XJE A;  1R8W A;  3CCR P;  2CVS A;  3CD6 P;  2XAW A;  1NJI Q;  5CNU A;  2CVW A;  1W2B O;  5FAY A;  1QVG O;  1VQ8 P;  2Y8N A;  1H7B A;  1R1R A;  3CCV P;  2X0X A;  1XJK A;  1KD1 Q;  2WGH A;  2EUD A;  1YHQ P;  3O0N A;  3CCU P;  4MTJ A;  1HK8 A;  1VQ9 P;  3HNE A;  1VQK P;  3I56 P;  4R1R A;  1VQO P;  2QA4 P;  1YIT P;  1Q82 Q;  3CC7 P;  5CNV A;  3RSR A;  1PEO A;  3S8A A;  3HNF A;  1YI2 P;  2YAJ A;  2CVT A;  2XAX A;  1H18 A;  1N8R Q;  1RLR A;  2XO4 A;  3CXC O;  5FAV A;  1QHM A;  1R9D A;  1Q81 Q;  5KDP A;  3CPW O;  1YJN P;  2OTL P;  1YJW P;  3CME P;  2XAV A;  1L1L A;  3CCM P;  3CC4 P;  1S72 P;  2XAY A;  1Q7Y Q;  1VQN P;  2BQ1 E;  3CC2 P;  2OTJ P;  1K73 Q;  1VQL P;  2CVY A;  1H17 A;  2CVU A;  2HA9 A;  3CCE P;  3CCS P;  1ZYZ A;  2R1R A; 
#chains in the Genus database with same CATH homology
 1KQS O;  1XJG A;  3G6E P;  5FAW A;  2F3O A;  1CM5 A;  2XO5 A;  2ZLF A;  3S87 A;  1JJ2 O;  2XAP A;  3G71 P;  1K8A Q;  1H78 A;  3CCQ P;  5R1R A;  1YIJ P;  1PEM A;  2CVV A;  1H7A A;  3PFL A;  2QEX P;  3R1R A;  5CNT A;  3TB9 A;  1XJM A;  1XJF A;  3S8C A;  3O0Q A;  1XJJ A;  3CCL P;  1VQ5 P;  3I55 P;  2PFL A;  1VQM P;  1PEU A;  2CVX A;  7R1R A;  1ZZD A;  5A0U A;  3G4S P;  4X3V A;  1Q86 Q;  1H79 A;  5A0Z A;  1KC8 Q;  1VQ4 P;  1XJN A;  5FAU A;  1QVF O;  3CCJ P;  2XAK A;  3HNC A;  3O0O A;  1M90 Q;  1VQ7 P;  1M1K Q;  1K9M Q;  1YJ9 P;  3TBA A;  3OW2 O;  1PEQ A;  3CMA P;  3K8T A;  4ERM A;  3HND A;  2XAZ A;  3S8B A;  5CNS A;  1H16 A;  2ZLG A;  1VQ6 P;  1MZO A;  6R1R A;  1VQP P;  1XJE A;  1R8W A;  3CCR P;  2CVS A;  3CD6 P;  2XAW A;  1NJI Q;  5CNU A;  2CVW A;  1W2B O;  5FAY A;  1QVG O;  1VQ8 P;  2Y8N A;  1H7B A;  1R1R A;  3CCV P;  2X0X A;  1XJK A;  1KD1 Q;  2WGH A;  2EUD A;  1YHQ P;  3O0N A;  3CCU P;  4MTJ A;  1HK8 A;  1VQ9 P;  3HNE A;  1VQK P;  3I56 P;  4R1R A;  1VQO P;  2QA4 P;  1YIT P;  1Q82 Q;  3CC7 P;  5CNV A;  3RSR A;  1PEO A;  3S8A A;  3HNF A;  1YI2 P;  2YAJ A;  2CVT A;  2XAX A;  1H18 A;  1N8R Q;  1RLR A;  2XO4 A;  3CXC O;  5FAV A;  1QHM A;  1R9D A;  1Q81 Q;  5KDP A;  3CPW O;  1YJN P;  2OTL P;  1YJW P;  3CME P;  2XAV A;  1L1L A;  3CCM P;  3CC4 P;  1S72 P;  2XAY A;  1Q7Y Q;  1VQN P;  2BQ1 E;  3CC2 P;  2OTJ P;  1K73 Q;  1VQL P;  2CVY A;  1H17 A;  2CVU A;  2HA9 A;  3CCE P;  3CCS P;  1ZYZ A;  2R1R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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