1PIV4

Binding of the antiviral drug win51711 to the sabin strain of type 3 poliovirus: structural comparison with drug binding in rhinovirus 14
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
62
Chain Sequence
GAQVSSQKVGAHENSSTINYTTINYYKDSASNAASKQDYSQDPSKFTEPLKDVLIKTAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords POLIOVIRUS TYPE 3 (SUBUNIT VP1)
publication title Binding of the antiviral drug WIN51711 to the sabin strain of type 3 poliovirus: structural comparison with drug binding in rhinovirus 14.
pubmed doi rcsb
source organism Poliovirus type 3 (strains p3/leon/37 and p3/leon 12a[1]b)
total genus 4
structure length 62
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1995-02-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1piv400
1RMU4 1OOPD 4Q4Y4 1ASJ4 1NA1D 2HWC4 1AL24 1RUJ4 2PLV4 1H8TD 1MQTD 2R064 2R074 4Q4V4 1VBD4 1RUF4 2RM24 2RMU4 1K5MD 2X5ID 1R084 1EAH4 1HRV4 1POV0 1EV14 1RHI4 2HWB4 1R094 4GB34 1RUC4 1AR94 1VRH4 1COV4 2RS34 1D4M4 3JD74 1RUI4 4RHV4 2RS14 1VBA4 3JBG4 1VBE4 1PO24 1NCQD 1RUD4 1VBB4 1BEV4 1AR84 1PVC4 1Z7S4 1VBC4 1RVF4 3J8F4 4Q4X4 2RR14 4Q4W4 1AR64 1HXS4 2RS54 1RUE4 4PDWD 1RUH4 1AR74 1PIV4 1PO14 1HRI4 2R044 1RUG4
chains in the Genus database with same CATH superfamily
3GQKA 4YTMA 2WU5A 1ASJ4 3SUCA 3P4RA 5C2TA 1XI1A 1K5MD 2PW9A 1HRV4 3AE6A 1R094 3AEEA 4GB34 1VRH4 4YSXA 1PO24 1ZOYA 3P4SA 1AR84 2EX3A 1HXS4 3AE8A 1RUH4 1AR74 3AE2A 1HRI4 3P4QA 2R044 2WDQA 1YQ3A 3AECA 2H88A 2R074 2PYJA 1VBD4 2ACZA 2RMU4 5C3JA 2X5ID 2PYLA 1R084 3AE9A 3SFEA 1POV0 3SFDA 4KX6A 4YTNA 1RUC4 2FBWA 3FI7A 3AEAA 4YTPA 1KFYA 2RS34 3JD74 1RUI4 1NENA 1Z7S4 1PVC4 1RVF4 3VR9A 4YSYA 4Q4W4 2RS54 4PDWD 2PY5A 1RUG4 1RMU4 1ZP0A 3AE7A 2HWC4 1AL24 2WQYA 2PLV4 1MQTD 1YQ4A 1RUF4 2RM24 2R7FA 3VRBA 1L0VA 3AEGA 3AE1A 2HWB4 4YXDA 2WU2A 1COV4 1D4M4 3GQHA 3ABVA 3P4PA 3JBG4 2PZSA 1VBB4 1NCQD 3AEDA 1VBC4 3J8F4 4Q4X4 1RUE4 1PIV4 2WDVA 2B76A 3AEBA 1OOPD 2WDRA 4Q4Y4 1NA1D 4YT0A 2WP9A 1RUJ4 2R064 1H8TD 4Q4V4 4YSZA 3VRAA 3AE5A 1EAH4 1KF6A 1EV14 1RHI4 1XHXA 1XHZA 1AR94 3AE4A 2H89A 4RHV4 2RS14 1VBA4 1VBE4 3AE3A 1NEKA 1RUD4 1BEV4 2RR14 2WS3A 1AR64 3VR8A 1PO14 3CIRA 3AEFA
chains in the Genus database with same CATH topology
1RMU4 1OOPD 4Q4Y4 1ASJ4 1NA1D 2HWC4 1AL24 1RUJ4 2PLV4 1H8TD 1MQTD 2R064 2R074 4Q4V4 1VBD4 1RUF4 2RM24 2RMU4 1K5MD 2X5ID 1R084 1EAH4 1HRV4 1POV0 1EV14 1RHI4 2HWB4 1R094 4GB34 1RUC4 1AR94 1VRH4 1COV4 2RS34 1D4M4 3JD74 1RUI4 4RHV4 2RS14 1VBA4 3JBG4 1VBE4 1PO24 1NCQD 1RUD4 1VBB4 1BEV4 1AR84 1PVC4 1Z7S4 1VBC4 1RVF4 3J8F4 4Q4X4 2RR14 4Q4W4 1AR64 1HXS4 2RS54 1RUE4 4PDWD 1RUH4 1AR74 1PIV4 1PO14 1HRI4 2R044 1RUG4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RMU 4;  1OOP D;  4Q4Y 4;  1ASJ 4;  1NA1 D;  2HWC 4;  1AL2 4;  1RUJ 4;  2PLV 4;  1H8T D;  1MQT D;  2R06 4;  2R07 4;  4Q4V 4;  1VBD 4;  1RUF 4;  2RM2 4;  2RMU 4;  1K5M D;  2X5I D;  1R08 4;  1EAH 4;  1HRV 4;  1POV 0;  1EV1 4;  1RHI 4;  2HWB 4;  1R09 4;  4GB3 4;  1RUC 4;  1AR9 4;  1VRH 4;  1COV 4;  2RS3 4;  1D4M 4;  3JD7 4;  1RUI 4;  4RHV 4;  2RS1 4;  1VBA 4;  3JBG 4;  1VBE 4;  1PO2 4;  1NCQ D;  1RUD 4;  1VBB 4;  1BEV 4;  1AR8 4;  1PVC 4;  1Z7S 4;  1VBC 4;  1RVF 4;  3J8F 4;  4Q4X 4;  2RR1 4;  4Q4W 4;  1AR6 4;  1HXS 4;  2RS5 4;  1RUE 4;  4PDW D;  1RUH 4;  1AR7 4;  1PIV 4;  1PO1 4;  1HRI 4;  2R04 4;  1RUG 4; 
#chains in the Genus database with same CATH topology
 3GQK A;  4YTM A;  2WU5 A;  1ASJ 4;  3SUC A;  3P4R A;  5C2T A;  1XI1 A;  1K5M D;  2PW9 A;  1HRV 4;  3AE6 A;  1R09 4;  3AEE A;  4GB3 4;  1VRH 4;  4YSX A;  1PO2 4;  1ZOY A;  3P4S A;  1AR8 4;  2EX3 A;  1HXS 4;  3AE8 A;  1RUH 4;  1AR7 4;  3AE2 A;  1HRI 4;  3P4Q A;  2R04 4;  2WDQ A;  1YQ3 A;  3AEC A;  2H88 A;  2R07 4;  2PYJ A;  1VBD 4;  2ACZ A;  2RMU 4;  5C3J A;  2X5I D;  2PYL A;  1R08 4;  3AE9 A;  3SFE A;  1POV 0;  3SFD A;  4KX6 A;  4YTN A;  1RUC 4;  2FBW A;  3FI7 A;  3AEA A;  4YTP A;  1KFY A;  2RS3 4;  3JD7 4;  1RUI 4;  1NEN A;  1Z7S 4;  1PVC 4;  1RVF 4;  3VR9 A;  4YSY A;  4Q4W 4;  2RS5 4;  4PDW D;  2PY5 A;  1RUG 4;  1RMU 4;  1ZP0 A;  3AE7 A;  2HWC 4;  1AL2 4;  2WQY A;  2PLV 4;  1MQT D;  1YQ4 A;  1RUF 4;  2RM2 4;  2R7F A;  3VRB A;  1L0V A;  3AEG A;  3AE1 A;  2HWB 4;  4YXD A;  2WU2 A;  1COV 4;  1D4M 4;  3GQH A;  3ABV A;  3P4P A;  3JBG 4;  2PZS A;  1VBB 4;  1NCQ D;  3AED A;  1VBC 4;  3J8F 4;  4Q4X 4;  1RUE 4;  1PIV 4;  2WDV A;  2B76 A;  3AEB A;  1OOP D;  2WDR A;  4Q4Y 4;  1NA1 D;  4YT0 A;  2WP9 A;  1RUJ 4;  2R06 4;  1H8T D;  4Q4V 4;  4YSZ A;  3VRA A;  3AE5 A;  1EAH 4;  1KF6 A;  1EV1 4;  1RHI 4;  1XHX A;  1XHZ A;  1AR9 4;  3AE4 A;  2H89 A;  4RHV 4;  2RS1 4;  1VBA 4;  1VBE 4;  3AE3 A;  1NEK A;  1RUD 4;  1BEV 4;  2RR1 4;  2WS3 A;  1AR6 4;  3VR8 A;  1PO1 4;  3CIR A;  3AEF A; 
#chains in the Genus database with same CATH homology
 1RMU 4;  1OOP D;  4Q4Y 4;  1ASJ 4;  1NA1 D;  2HWC 4;  1AL2 4;  1RUJ 4;  2PLV 4;  1H8T D;  1MQT D;  2R06 4;  2R07 4;  4Q4V 4;  1VBD 4;  1RUF 4;  2RM2 4;  2RMU 4;  1K5M D;  2X5I D;  1R08 4;  1EAH 4;  1HRV 4;  1POV 0;  1EV1 4;  1RHI 4;  2HWB 4;  1R09 4;  4GB3 4;  1RUC 4;  1AR9 4;  1VRH 4;  1COV 4;  2RS3 4;  1D4M 4;  3JD7 4;  1RUI 4;  4RHV 4;  2RS1 4;  1VBA 4;  3JBG 4;  1VBE 4;  1PO2 4;  1NCQ D;  1RUD 4;  1VBB 4;  1BEV 4;  1AR8 4;  1PVC 4;  1Z7S 4;  1VBC 4;  1RVF 4;  3J8F 4;  4Q4X 4;  2RR1 4;  4Q4W 4;  1AR6 4;  1HXS 4;  2RS5 4;  1RUE 4;  4PDW D;  1RUH 4;  1AR7 4;  1PIV 4;  1PO1 4;  1HRI 4;  2R04 4;  1RUG 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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