The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
275
|
sequence length |
827
|
structure length |
827
|
Chain Sequence |
b'TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADGVIPADIVVSCAGFWGAKIGAMIGMAVPLLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRHQDQDLYYREHGDRYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDFLPAWEATKQLLPALADSEIEDGFNGIFSFTPDGGPLLGESKELDGFYVAEAVWVTHSAGVAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPRLSPRNLRVSPFHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPGALKLLQELTTADLAKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAARHQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAKESFIGKGALEGRTEEASARRLRCLTIDDGRSIVLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGTVSVGDSVDIEYFGRRITATVTEDPLYDPKMTRLRG'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Channelling and formation of 'active' formaldehyde in dimethylglycine oxidase.
pubmed doi rcsb |
| molecule keywords |
N,N-dimethylglycine oxidase
|
| source organism |
Arthrobacter globiformis
|
| molecule tags |
Oxidoreductase
|
| total genus |
275
|
| structure length |
827
|
| sequence length |
827
|
| ec nomenclature |
ec
1.5.3.10: Dimethylglycine oxidase. |
| pdb deposition date | 2003-06-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01266 | DAO | FAD dependent oxidoreductase |
| A | PF01571 | GCV_T | Aminomethyltransferase folate-binding domain |
| A | PF08669 | GCV_T_C | Glycine cleavage T-protein C-terminal barrel domain |
| A | PF16350 | FAO_M | FAD dependent oxidoreductase central domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu); domain 3 | Aminomethyltransferase beta-barrel domains | ||
| Alpha Beta | 2-Layer Sandwich | D-Amino Acid Oxidase; Chain A, domain 2 | D-Amino Acid Oxidase, subunit A, domain 2 | ||
| Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Aminomethyltransferase beta-barrel domains | ||
| Alpha Beta | 2-Layer Sandwich | Gyrase A; domain 2 | Probable tRNA modification gtpase trme; domain 1 | ||
| Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain |
