1PLOA

Transforming growth factor-beta type ii receptor extracellular domain
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
122
structure length
122
Chain Sequence
VTDNAGAVKFPQLCKFCDVRFSTCDNQKSCMSNCSITSICEKPQEVCVAVWRKNDENITLETVCHDPKLPYHDFILEDAASPKCIMKEKKKPGETFFMCSCSSDECNDNIIFSEEYNTSNPD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cytokine receptor
molecule keywords TGF-beta receptor type II
publication title Solution structure and backbone dynamics of the TGF-beta type II receptor extracellular domain
pubmed doi rcsb
source organism Homo sapiens
total genus 10
structure length 122
sequence length 122
ec nomenclature ec 2.7.11.30: Receptor protein serine/threonine kinase.
pdb deposition date 2003-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08917 ecTbetaR2 Transforming growth factor beta receptor 2 ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1ploA00
1HOYA 2CTXA 1ABTA 2GOOB 5IMYC 1TGXA 2LCRA 1RL5A 1CDRA 1CXNA 4QTIU 1CDQA 1ES7B 1UG4A 2FD6U 1ERGA 1JBDA 1FSCA 2CRSA 2I9BE 4FAOE 2MUPA 3KFDE 1TXBA 1FSSB 1S4YA 1LXHA 1CRFA 2H64B 2H62D 1NEAA 2ERAA 1IDGA 1NORA 1ONJA 1CVOA 4P7UA 4DO8A 1HC9A 1B41B 1FFJA 1QM7A 1IDLA 1CCQA 1XT3A 1CXOA 1KL8A 3BT2U 1CREA 4AEAA 1IDIA 2BTXA 1NTXA 1CB9A 2LA1A 2OFSA 3QB4B 4OM4A 1IDHA 1TFSA 2QJAC 1I02A 1CODA 3VTSA 1BTEA 1PLOA 1NXBA 4UY2C 2H7ZA 3U74U 1HC9B 2PJYB 1HAJA 2MJ4A 1KS6A 1FASA 2HLQA 1COEA 1KFHA 1LXGA 2L5SA 3PLCA 1H0JA 2GOOC 3KFDI 2CRTA 1QKEA 1ERAA 2H62C 2QJBC 3FEVA 1KXIA 5DU1A 4OM5A 5DO6A 1JE9A 3BT1U 2BHIA 3NEQA 2NBTA 2QJ9C 1KBAA 1L4WA 2VLWA 2J8BA 4ZQYA 1VB0A 2H7ZB 1LJZA 2H64C 3NH7A 1QKDA 1KBSA 2MJ0A 3ERAA 1M9ZA 1FF4A 4HQPF 2L03A 1HAAA 2ABXA 4XJJA 1BXPA 1FRAA 1V6PA 1KC4A 1IQ9A 1IJCA 1CDTA 3U73U 1JGKA 2QC1A 1MR6A 1IKCA 1F94A 3EVSC 1W6BA 1TXAA 4RUDA 1KU6B 1CTXA 4IYEA 1REWC 2K3GA 2H5FA 1YWHA 4BDTB 1MAHF 1CDSA 3HH7A 4EY8B 4FAOC 3LAQU 1IK8A 2UWRA 2CCXA 2X8BB 5EBXA 2UX2A 1KBTA 2MHYA 1NYUA 2H8UA 2PJYC 2MJYA 3EBXA 2JQPA 1F8UB 1NYSA 2N99A 5DZ5A 1DRSA 2CDXA 2HLRA 1NTNA 2MFAA 4LFTA 1LSIA 1LX5B 2JVEA 5IMTD 1G6MA 1ZADA 2MUOA 6EBXA 1RGJA 4BIKB 1KTZB 1CHVS 3NDSA
chains in the Genus database with same CATH superfamily
1HOYA 4KSNA 2CTXA 1ABTA 2GOOB 5IMYC 1TGXA 2LCRA 1RL5A 1CDRA 1CXNA 4QTIU 1CDQA 1ES7B 1UG4A 2FD6U 1ERGA 1JBDA 1FSCA 2CRSA 2I9BE 4FAOE 2MUPA 3KFDE 1TXBA 1FSSB 1S4YA 1LXHA 1CRFA 2H64B 2H62D 1NEAA 2ERAA 1IDGA 1NORA 1ONJA 1CVOA 4P7UA 4DO8A 1HC9A 1B41B 1FFJA 1QM7A 1IDLA 1CCQA 1XT3A 1CXOA 1KL8A 3BT2U 1CREA 4AEAA 1IDIA 2BTXA 1NTXA 1CB9A 2LA1A 2OFSA 3QB4B 4OM4A 1IDHA 1TFSA 2QJAC 1I02A 1CODA 3VTSA 1BTEA 1PLOA 1NXBA 4UY2C 2H7ZA 3U74U 1HC9B 2PJYB 1HAJA 2MJ4A 1KS6A 1FASA 2HLQA 1COEA 1KFHA 1LXGA 2L5SA 3PLCA 1H0JA 2GOOC 3KFDI 2CRTA 1QKEA 1ERAA 2H62C 2QJBC 3FEVA 1KXIA 5DU1A 4OM5A 5DO6A 1JE9A 3BT1U 2BHIA 3NEQA 2NBTA 2QJ9C 1KBAA 1L4WA 2VLWA 2J8BA 4ZQYA 1VB0A 2H7ZB 1LJZA 2H64C 3NH7A 1QKDA 1KBSA 2MJ0A 3ERAA 1M9ZA 1FF4A 4HQPF 2L03A 1HAAA 2ABXA 4XJJA 1BXPA 1FRAA 1V6PA 1KC4A 1IQ9A 1IJCA 1CDTA 3U73U 1JGKA 2QC1A 1MR6A 1IKCA 1F94A 3EVSC 1W6BA 1TXAA 4RUDA 1KU6B 1CTXA 4IYEA 1REWC 2K3GA 2H5FA 1YWHA 4BDTB 1MAHF 1CDSA 3HH7A 4EY8B 4FAOC 3LAQU 1IK8A 2UWRA 2CCXA 2X8BB 5EBXA 2UX2A 1KBTA 2MHYA 1NYUA 2H8UA 2PJYC 2MJYA 3EBXA 2JQPA 1F8UB 1NYSA 2N99A 5DZ5A 1DRSA 2CDXA 2HLRA 1NTNA 2MFAA 4LFTA 1LSIA 1LX5B 2JVEA 5IMTD 1G6MA 1ZADA 2MUOA 6EBXA 1RGJA 4BIKB 1KTZB 1CHVS 3NDSA
chains in the Genus database with same CATH topology
1HOYA 4KSNA 2CTXA 1ABTA 2GOOB 5IMYC 1TGXA 2LCRA 1RL5A 1CDRA 1CXNA 4QTIU 1CDQA 1ES7B 1UG4A 2FD6U 1ERGA 1JBDA 1FSCA 2CRSA 2I9BE 4FAOE 2MUPA 3KFDE 1TXBA 1FSSB 1S4YA 1LXHA 1CRFA 2H64B 2H62D 1NEAA 2ERAA 1IDGA 1NORA 1ONJA 1CVOA 4P7UA 4DO8A 1HC9A 1B41B 1FFJA 1QM7A 1IDLA 1CCQA 1XT3A 1CXOA 1KL8A 3BT2U 1CREA 4AEAA 1IDIA 2BTXA 1NTXA 1CB9A 2LA1A 2OFSA 3QB4B 4OM4A 1IDHA 1TFSA 2QJAC 1I02A 1CODA 3VTSA 1BTEA 1PLOA 1NXBA 4UY2C 2H7ZA 3U74U 1HC9B 2PJYB 1HAJA 2MJ4A 1KS6A 1FASA 2HLQA 1COEA 1KFHA 1LXGA 2L5SA 3PLCA 1H0JA 2GOOC 3KFDI 2CRTA 1QKEA 1ERAA 2H62C 2QJBC 3FEVA 1KXIA 5DU1A 4OM5A 5DO6A 1JE9A 3BT1U 2BHIA 3NEQA 2NBTA 2QJ9C 1KBAA 1L4WA 2VLWA 2J8BA 4ZQYA 1VB0A 2H7ZB 1LJZA 2H64C 3NH7A 1QKDA 1KBSA 2MJ0A 3ERAA 1M9ZA 1FF4A 4HQPF 2L03A 1HAAA 2ABXA 4XJJA 1BXPA 1FRAA 1V6PA 1KC4A 1IQ9A 1IJCA 1CDTA 3U73U 1JGKA 2QC1A 1MR6A 1IKCA 1F94A 3EVSC 1W6BA 1TXAA 4RUDA 1KU6B 1CTXA 4IYEA 1REWC 2K3GA 2H5FA 1YWHA 4BDTB 1MAHF 1CDSA 3HH7A 4EY8B 4FAOC 3LAQU 1IK8A 2UWRA 2CCXA 2X8BB 5EBXA 2UX2A 1KBTA 2MHYA 1NYUA 2H8UA 2PJYC 2MJYA 3EBXA 2JQPA 1F8UB 1NYSA 2N99A 5DZ5A 1DRSA 2CDXA 2HLRA 1NTNA 2MFAA 4LFTA 1LSIA 1LX5B 2JVEA 5IMTD 1G6MA 1ZADA 2MUOA 6EBXA 1RGJA 4BIKB 1KTZB 1CHVS 3NDSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HOY A;  2CTX A;  1ABT A;  2GOO B;  5IMY C;  1TGX A;  2LCR A;  1RL5 A;  1CDR A;  1CXN A;  4QTI U;  1CDQ A;  1ES7 B;  1UG4 A;  2FD6 U;  1ERG A;  1JBD A;  1FSC A;  2CRS A;  2I9B E;  4FAO E;  2MUP A;  3KFD E;  1TXB A;  1FSS B;  1S4Y A;  1LXH A;  1CRF A;  2H64 B;  2H62 D;  1NEA A;  2ERA A;  1IDG A;  1NOR A;  1ONJ A;  1CVO A;  4P7U A;  4DO8 A;  1HC9 A;  1B41 B;  1FFJ A;  1QM7 A;  1IDL A;  1CCQ A;  1XT3 A;  1CXO A;  1KL8 A;  3BT2 U;  1CRE A;  4AEA A;  1IDI A;  2BTX A;  1NTX A;  1CB9 A;  2LA1 A;  2OFS A;  3QB4 B;  4OM4 A;  1IDH A;  1TFS A;  2QJA C;  1I02 A;  1COD A;  3VTS A;  1BTE A;  1PLO A;  1NXB A;  4UY2 C;  2H7Z A;  3U74 U;  1HC9 B;  2PJY B;  1HAJ A;  2MJ4 A;  1KS6 A;  1FAS A;  2HLQ A;  1COE A;  1KFH A;  1LXG A;  2L5S A;  3PLC A;  1H0J A;  2GOO C;  3KFD I;  2CRT A;  1QKE A;  1ERA A;  2H62 C;  2QJB C;  3FEV A;  1KXI A;  5DU1 A;  4OM5 A;  5DO6 A;  1JE9 A;  3BT1 U;  2BHI A;  3NEQ A;  2NBT A;  2QJ9 C;  1KBA A;  1L4W A;  2VLW A;  2J8B A;  4ZQY A;  1VB0 A;  2H7Z B;  1LJZ A;  2H64 C;  3NH7 A;  1QKD A;  1KBS A;  2MJ0 A;  3ERA A;  1M9Z A;  1FF4 A;  4HQP F;  2L03 A;  1HAA A;  2ABX A;  4XJJ A;  1BXP A;  1FRA A;  1V6P A;  1KC4 A;  1IQ9 A;  1IJC A;  1CDT A;  3U73 U;  1JGK A;  2QC1 A;  1MR6 A;  1IKC A;  1F94 A;  3EVS C;  1W6B A;  1TXA A;  4RUD A;  1KU6 B;  1CTX A;  4IYE A;  1REW C;  2K3G A;  2H5F A;  1YWH A;  4BDT B;  1MAH F;  1CDS A;  3HH7 A;  4EY8 B;  4FAO C;  3LAQ U;  1IK8 A;  2UWR A;  2CCX A;  2X8B B;  5EBX A;  2UX2 A;  1KBT A;  2MHY A;  1NYU A;  2H8U A;  2PJY C;  2MJY A;  3EBX A;  2JQP A;  1F8U B;  1NYS A;  2N99 A;  5DZ5 A;  1DRS A;  2CDX A;  2HLR A;  1NTN A;  2MFA A;  4LFT A;  1LSI A;  1LX5 B;  2JVE A;  5IMT D;  1G6M A;  1ZAD A;  2MUO A;  6EBX A;  1RGJ A;  4BIK B;  1KTZ B;  1CHV S;  3NDS A; 
#chains in the Genus database with same CATH topology
 1HOY A;  4KSN A;  2CTX A;  1ABT A;  2GOO B;  5IMY C;  1TGX A;  2LCR A;  1RL5 A;  1CDR A;  1CXN A;  4QTI U;  1CDQ A;  1ES7 B;  1UG4 A;  2FD6 U;  1ERG A;  1JBD A;  1FSC A;  2CRS A;  2I9B E;  4FAO E;  2MUP A;  3KFD E;  1TXB A;  1FSS B;  1S4Y A;  1LXH A;  1CRF A;  2H64 B;  2H62 D;  1NEA A;  2ERA A;  1IDG A;  1NOR A;  1ONJ A;  1CVO A;  4P7U A;  4DO8 A;  1HC9 A;  1B41 B;  1FFJ A;  1QM7 A;  1IDL A;  1CCQ A;  1XT3 A;  1CXO A;  1KL8 A;  3BT2 U;  1CRE A;  4AEA A;  1IDI A;  2BTX A;  1NTX A;  1CB9 A;  2LA1 A;  2OFS A;  3QB4 B;  4OM4 A;  1IDH A;  1TFS A;  2QJA C;  1I02 A;  1COD A;  3VTS A;  1BTE A;  1PLO A;  1NXB A;  4UY2 C;  2H7Z A;  3U74 U;  1HC9 B;  2PJY B;  1HAJ A;  2MJ4 A;  1KS6 A;  1FAS A;  2HLQ A;  1COE A;  1KFH A;  1LXG A;  2L5S A;  3PLC A;  1H0J A;  2GOO C;  3KFD I;  2CRT A;  1QKE A;  1ERA A;  2H62 C;  2QJB C;  3FEV A;  1KXI A;  5DU1 A;  4OM5 A;  5DO6 A;  1JE9 A;  3BT1 U;  2BHI A;  3NEQ A;  2NBT A;  2QJ9 C;  1KBA A;  1L4W A;  2VLW A;  2J8B A;  4ZQY A;  1VB0 A;  2H7Z B;  1LJZ A;  2H64 C;  3NH7 A;  1QKD A;  1KBS A;  2MJ0 A;  3ERA A;  1M9Z A;  1FF4 A;  4HQP F;  2L03 A;  1HAA A;  2ABX A;  4XJJ A;  1BXP A;  1FRA A;  1V6P A;  1KC4 A;  1IQ9 A;  1IJC A;  1CDT A;  3U73 U;  1JGK A;  2QC1 A;  1MR6 A;  1IKC A;  1F94 A;  3EVS C;  1W6B A;  1TXA A;  4RUD A;  1KU6 B;  1CTX A;  4IYE A;  1REW C;  2K3G A;  2H5F A;  1YWH A;  4BDT B;  1MAH F;  1CDS A;  3HH7 A;  4EY8 B;  4FAO C;  3LAQ U;  1IK8 A;  2UWR A;  2CCX A;  2X8B B;  5EBX A;  2UX2 A;  1KBT A;  2MHY A;  1NYU A;  2H8U A;  2PJY C;  2MJY A;  3EBX A;  2JQP A;  1F8U B;  1NYS A;  2N99 A;  5DZ5 A;  1DRS A;  2CDX A;  2HLR A;  1NTN A;  2MFA A;  4LFT A;  1LSI A;  1LX5 B;  2JVE A;  5IMT D;  1G6M A;  1ZAD A;  2MUO A;  6EBX A;  1RGJ A;  4BIK B;  1KTZ B;  1CHV S;  3NDS A; 
#chains in the Genus database with same CATH homology
 1HOY A;  4KSN A;  2CTX A;  1ABT A;  2GOO B;  5IMY C;  1TGX A;  2LCR A;  1RL5 A;  1CDR A;  1CXN A;  4QTI U;  1CDQ A;  1ES7 B;  1UG4 A;  2FD6 U;  1ERG A;  1JBD A;  1FSC A;  2CRS A;  2I9B E;  4FAO E;  2MUP A;  3KFD E;  1TXB A;  1FSS B;  1S4Y A;  1LXH A;  1CRF A;  2H64 B;  2H62 D;  1NEA A;  2ERA A;  1IDG A;  1NOR A;  1ONJ A;  1CVO A;  4P7U A;  4DO8 A;  1HC9 A;  1B41 B;  1FFJ A;  1QM7 A;  1IDL A;  1CCQ A;  1XT3 A;  1CXO A;  1KL8 A;  3BT2 U;  1CRE A;  4AEA A;  1IDI A;  2BTX A;  1NTX A;  1CB9 A;  2LA1 A;  2OFS A;  3QB4 B;  4OM4 A;  1IDH A;  1TFS A;  2QJA C;  1I02 A;  1COD A;  3VTS A;  1BTE A;  1PLO A;  1NXB A;  4UY2 C;  2H7Z A;  3U74 U;  1HC9 B;  2PJY B;  1HAJ A;  2MJ4 A;  1KS6 A;  1FAS A;  2HLQ A;  1COE A;  1KFH A;  1LXG A;  2L5S A;  3PLC A;  1H0J A;  2GOO C;  3KFD I;  2CRT A;  1QKE A;  1ERA A;  2H62 C;  2QJB C;  3FEV A;  1KXI A;  5DU1 A;  4OM5 A;  5DO6 A;  1JE9 A;  3BT1 U;  2BHI A;  3NEQ A;  2NBT A;  2QJ9 C;  1KBA A;  1L4W A;  2VLW A;  2J8B A;  4ZQY A;  1VB0 A;  2H7Z B;  1LJZ A;  2H64 C;  3NH7 A;  1QKD A;  1KBS A;  2MJ0 A;  3ERA A;  1M9Z A;  1FF4 A;  4HQP F;  2L03 A;  1HAA A;  2ABX A;  4XJJ A;  1BXP A;  1FRA A;  1V6P A;  1KC4 A;  1IQ9 A;  1IJC A;  1CDT A;  3U73 U;  1JGK A;  2QC1 A;  1MR6 A;  1IKC A;  1F94 A;  3EVS C;  1W6B A;  1TXA A;  4RUD A;  1KU6 B;  1CTX A;  4IYE A;  1REW C;  2K3G A;  2H5F A;  1YWH A;  4BDT B;  1MAH F;  1CDS A;  3HH7 A;  4EY8 B;  4FAO C;  3LAQ U;  1IK8 A;  2UWR A;  2CCX A;  2X8B B;  5EBX A;  2UX2 A;  1KBT A;  2MHY A;  1NYU A;  2H8U A;  2PJY C;  2MJY A;  3EBX A;  2JQP A;  1F8U B;  1NYS A;  2N99 A;  5DZ5 A;  1DRS A;  2CDX A;  2HLR A;  1NTN A;  2MFA A;  4LFT A;  1LSI A;  1LX5 B;  2JVE A;  5IMT D;  1G6M A;  1ZAD A;  2MUO A;  6EBX A;  1RGJ A;  4BIK B;  1KTZ B;  1CHV S;  3NDS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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