1PMLA

Kringle-kringle interactions in multimer kringle structures
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
86
structure length
86
Chain Sequence
SDCYFGNGSAYRGTHSLTESGASCLPWNSMILIGKVYTAQNPSAQALGLGKHNYCRNPDGDAKPWCHVLKNRRLTWEYCDVPSCST
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase(serine protease)
molecule keywords TISSUE PLASMINOGEN ACTIVATOR KRINGLE 2
publication title Kringle-kringle interactions in multimer kringle structures.
pubmed rcsb
source organism Homo sapiens
total genus 17
structure length 86
sequence length 86
chains with identical sequence B, C
ec nomenclature ec 3.4.21.68: T-plasminogen activator.
pdb deposition date 1994-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 1pmlA00
1A0HA 2DOIA 4O03A 5CS3A 2K51A 1PMLA 3U73A 5CS9A 4BV7A 1NK1A 2QJ2A 2PK4A 1NL1A 3BT2A 5CT1A 1B2IA 1PK2A 2K4RA 2I9AA 2FD6A 4BVCA 5CSQA 2KJ4A 1CEBA 2PF2A 4BVVA 2FEBA 1GMNA 3KIVA 4CIKA 1GMOA 4BVWA 4A5TS 1I71A 1PK4A 3SP8A 1KI0A 1BHTA 2DOHX 3MKPA 1KIVA 1PMKA 1CEAA 2I9BA 2PF1A 2HPPP 5CS1A 1HPJA 1KDUA 4IUAA 4DURA 5COEA 5HPGA 3HN4A 2HPQP 3BT1A 3K65A 4NZQA 1NL2A 1KRNA 4D3CA 1GP9A 1HPKA 2QJ4A 1PKRA 1I5KA 3NXPA 5CT2A 5CS5A 5CT3A 4BV5A 3LAQA 2SPTA 5CP9A 1TPKA 2KNFA 1JFNA 4BVDA 1URKA 4HZHA 3E6PL 2L0SA 4KIVA
chains in the Genus database with same CATH superfamily
1A0HA 2DOIA 4O03A 5CS3A 2K51A 1PMLA 3U73A 5CS9A 4BV7A 1NK1A 2QJ2A 2PK4A 1NL1A 3BT2A 5CT1A 1B2IA 1PK2A 2K4RA 2I9AA 2FD6A 4BVCA 5CSQA 2KJ4A 1CEBA 2PF2A 4BVVA 2FEBA 1GMNA 3KIVA 4CIKA 1GMOA 4BVWA 4A5TS 1I71A 1PK4A 3SP8A 1KI0A 1BHTA 2DOHX 3MKPA 1KIVA 1PMKA 1CEAA 2I9BA 2PF1A 2HPPP 5CS1A 1HPJA 1KDUA 4IUAA 4DURA 5COEA 5HPGA 3HN4A 2HPQP 3BT1A 3K65A 4NZQA 1NL2A 1KRNA 4D3CA 1GP9A 1HPKA 2QJ4A 1PKRA 1I5KA 3NXPA 5CT2A 5CS5A 5CT3A 4BV5A 3LAQA 2SPTA 5CP9A 1TPKA 2KNFA 1JFNA 4BVDA 1URKA 4HZHA 3E6PL 2L0SA 4KIVA
chains in the Genus database with same CATH topology
1A0HA 2DOIA 4O03A 5CS3A 2K51A 1PMLA 3U73A 5CS9A 4BV7A 1NK1A 2QJ2A 2PK4A 1NL1A 3BT2A 5CT1A 1B2IA 1PK2A 2K4RA 2I9AA 2FD6A 4BVCA 5CSQA 2KJ4A 1CEBA 2PF2A 4BVVA 2FEBA 1GMNA 3KIVA 4CIKA 1GMOA 4BVWA 4A5TS 1I71A 1PK4A 3SP8A 1KI0A 1BHTA 2DOHX 3MKPA 1KIVA 1PMKA 1CEAA 2I9BA 2PF1A 2HPPP 5CS1A 1HPJA 1KDUA 4IUAA 4DURA 5COEA 5HPGA 3HN4A 2HPQP 3BT1A 3K65A 4NZQA 1NL2A 1KRNA 4D3CA 1GP9A 1HPKA 2QJ4A 1PKRA 1I5KA 3NXPA 5CT2A 5CS5A 5CT3A 4BV5A 3LAQA 2SPTA 5CP9A 1TPKA 2KNFA 1JFNA 4BVDA 1URKA 4HZHA 3E6PL 2L0SA 4KIVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A0H A;  2DOI A;  4O03 A;  5CS3 A;  2K51 A;  1PML A;  3U73 A;  5CS9 A;  4BV7 A;  1NK1 A;  2QJ2 A;  2PK4 A;  1NL1 A;  3BT2 A;  5CT1 A;  1B2I A;  1PK2 A;  2K4R A;  2I9A A;  2FD6 A;  4BVC A;  5CSQ A;  2KJ4 A;  1CEB A;  2PF2 A;  4BVV A;  2FEB A;  1GMN A;  3KIV A;  4CIK A;  1GMO A;  4BVW A;  4A5T S;  1I71 A;  1PK4 A;  3SP8 A;  1KI0 A;  1BHT A;  2DOH X;  3MKP A;  1KIV A;  1PMK A;  1CEA A;  2I9B A;  2PF1 A;  2HPP P;  5CS1 A;  1HPJ A;  1KDU A;  4IUA A;  4DUR A;  5COE A;  5HPG A;  3HN4 A;  2HPQ P;  3BT1 A;  3K65 A;  4NZQ A;  1NL2 A;  1KRN A;  4D3C A;  1GP9 A;  1HPK A;  2QJ4 A;  1PKR A;  1I5K A;  3NXP A;  5CT2 A;  5CS5 A;  5CT3 A;  4BV5 A;  3LAQ A;  2SPT A;  5CP9 A;  1TPK A;  2KNF A;  1JFN A;  4BVD A;  1URK A;  4HZH A;  3E6P L;  2L0S A;  4KIV A; 
#chains in the Genus database with same CATH topology
 1A0H A;  2DOI A;  4O03 A;  5CS3 A;  2K51 A;  1PML A;  3U73 A;  5CS9 A;  4BV7 A;  1NK1 A;  2QJ2 A;  2PK4 A;  1NL1 A;  3BT2 A;  5CT1 A;  1B2I A;  1PK2 A;  2K4R A;  2I9A A;  2FD6 A;  4BVC A;  5CSQ A;  2KJ4 A;  1CEB A;  2PF2 A;  4BVV A;  2FEB A;  1GMN A;  3KIV A;  4CIK A;  1GMO A;  4BVW A;  4A5T S;  1I71 A;  1PK4 A;  3SP8 A;  1KI0 A;  1BHT A;  2DOH X;  3MKP A;  1KIV A;  1PMK A;  1CEA A;  2I9B A;  2PF1 A;  2HPP P;  5CS1 A;  1HPJ A;  1KDU A;  4IUA A;  4DUR A;  5COE A;  5HPG A;  3HN4 A;  2HPQ P;  3BT1 A;  3K65 A;  4NZQ A;  1NL2 A;  1KRN A;  4D3C A;  1GP9 A;  1HPK A;  2QJ4 A;  1PKR A;  1I5K A;  3NXP A;  5CT2 A;  5CS5 A;  5CT3 A;  4BV5 A;  3LAQ A;  2SPT A;  5CP9 A;  1TPK A;  2KNF A;  1JFN A;  4BVD A;  1URK A;  4HZH A;  3E6P L;  2L0S A;  4KIV A; 
#chains in the Genus database with same CATH homology
 1A0H A;  2DOI A;  4O03 A;  5CS3 A;  2K51 A;  1PML A;  3U73 A;  5CS9 A;  4BV7 A;  1NK1 A;  2QJ2 A;  2PK4 A;  1NL1 A;  3BT2 A;  5CT1 A;  1B2I A;  1PK2 A;  2K4R A;  2I9A A;  2FD6 A;  4BVC A;  5CSQ A;  2KJ4 A;  1CEB A;  2PF2 A;  4BVV A;  2FEB A;  1GMN A;  3KIV A;  4CIK A;  1GMO A;  4BVW A;  4A5T S;  1I71 A;  1PK4 A;  3SP8 A;  1KI0 A;  1BHT A;  2DOH X;  3MKP A;  1KIV A;  1PMK A;  1CEA A;  2I9B A;  2PF1 A;  2HPP P;  5CS1 A;  1HPJ A;  1KDU A;  4IUA A;  4DUR A;  5COE A;  5HPG A;  3HN4 A;  2HPQ P;  3BT1 A;  3K65 A;  4NZQ A;  1NL2 A;  1KRN A;  4D3C A;  1GP9 A;  1HPK A;  2QJ4 A;  1PKR A;  1I5K A;  3NXP A;  5CT2 A;  5CS5 A;  5CT3 A;  4BV5 A;  3LAQ A;  2SPT A;  5CP9 A;  1TPK A;  2KNF A;  1JFN A;  4BVD A;  1URK A;  4HZH A;  3E6P L;  2L0S A;  4KIV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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