1PN5A

Nmr structure of the nalp1 pyrin domain (pyd)
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
93
structure length
93
Chain Sequence
MAGGAWGRLACYLEFLKKEELKEFQLLLANKAHSRSSSGETPAQPEKTSGMEVASYLVAQYGEQRAWDLALHTWEQMGLRSLCAQAQEGAGHS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords NACHT-, LRR- and PYD-containing protein 2
publication title NMR structure of the apoptosis- and inflammation-related NALP1 pyrin domain
pubmed doi rcsb
source organism Homo sapiens
total genus 23
structure length 93
sequence length 93
ec nomenclature
pdb deposition date 2003-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01378 IgG_binding_B B domain
A PF02758 PYRIN PAAD/DAPIN/Pyrin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 1pn5A00
3YGSP 2MB9A 4O9FA 4O9LA 4A2QA 4N1KA 2BBRA 2YGSA 2A5YB 2YU0A 2NAQA 1WH4A 2MPCA 1E3YA 2LS7A 2A9IA 3YGSC 3J63A 4NQKA 2OF5H 4I16A 4O7QA 4QOBA 4ZBWA 3EZQB 1NGRA 2DO9A 3MOPG 3LQQA 4F44A 1Z6TA 2L6AA 4D8OA 2MS7A 2DBGA 4IZAB 3MOPK 4UZ0A 1DGNA 2DBFA 3EZQA 2KN6A 1ICHA 4IZ5E 2VGQA 4F42A 3QF2A 2N97A 2N1FA 2LWEA 1D2ZB 2P1HA 2L9MA 2HM2Q 3MOPA 2MN4A 4JUPA 1A1ZA 2OF5A 4M9ZA 4A2WA 2F1SA 1WMGA 2BBZA 3T6PA 4O6XA 2O71A 2NSNA 2G7RA 1D2ZA 2B1WA 3CL3A 2IB1A 2NZ7A 4JQWA 4E9MA 4EWIA 2MS8A 2N7ZA 4FH0A 1UCPA 4N1LA 2N83A 4N1JA 1YGOA 4DWNA 1A1WA 4RHWE 2DBHA 1DDFA 1PN5A 4M9XA 1WXPA 1N3KA 2N80A 1C15A 1CWWA 2KM6A 2YVIA 1FADA 4P4HI 4P4HA 4M9SA 2D96A 2YQFA 3CRDA 1E41A 3J6JA 2DBDA 2GF5A 3KATA 2LWDA 2M5VA 4LWDA 3LQRA 4RHWA 1CY5A 2N00A 4IZ7B
chains in the Genus database with same CATH superfamily
3YGSP 2MB9A 4O9FA 4O9LA 4A2QA 4N1KA 2BBRA 2YGSA 2A5YB 2YU0A 2NAQA 1WH4A 2MPCA 1E3YA 2LS7A 2A9IA 3YGSC 3J63A 4NQKA 2OF5H 4I16A 4O7QA 4QOBA 4ZBWA 3EZQB 1NGRA 2DO9A 3MOPG 3LQQA 4F44A 1Z6TA 2L6AA 4D8OA 2MS7A 2DBGA 4IZAB 3MOPK 4UZ0A 1DGNA 2DBFA 3EZQA 2KN6A 1ICHA 4IZ5E 2VGQA 4F42A 3QF2A 2N97A 2MJMA 2N1FA 2LWEA 1D2ZB 2P1HA 2L9MA 2HM2Q 3MOPA 2MN4A 4JUPA 1A1ZA 2OF5A 4M9ZA 4A2WA 2F1SA 1WMGA 2BBZA 3T6PA 4O6XA 2O71A 2NSNA 2G7RA 1D2ZA 2B1WA 3CL3A 2IB1A 2NZ7A 4JQWA 4E9MA 4EWIA 2MS8A 2N7ZA 4FH0A 1UCPA 4N1LA 2N83A 4N1JA 1YGOA 4DWNA 1A1WA 4RHWE 2DBHA 1DDFA 1PN5A 4M9XA 1WXPA 1N3KA 2N80A 1C15A 1CWWA 2KM6A 2YVIA 1FADA 4P4HI 4P4HA 4M9SA 2D96A 2YQFA 3CRDA 1E41A 3J6JA 2DBDA 2XV9A 2GF5A 3KATA 2LWDA 2M5VA 4LWDA 3LQRA 4RHWA 1CY5A 2N00A 4IZ7B
chains in the Genus database with same CATH topology
3YGSP 2MB9A 4O9FA 4O9LA 4A2QA 4N1KA 2BBRA 2YGSA 2A5YB 2YU0A 2NAQA 1WH4A 2MPCA 1E3YA 2LS7A 2A9IA 3YGSC 3J63A 4NQKA 2OF5H 4I16A 4O7QA 4QOBA 4ZBWA 3EZQB 1NGRA 2DO9A 3MOPG 3LQQA 4F44A 1Z6TA 2L6AA 4D8OA 2MS7A 2DBGA 4IZAB 3MOPK 4UZ0A 1DGNA 2DBFA 3EZQA 2KN6A 1ICHA 4IZ5E 2VGQA 4F42A 3QF2A 2N97A 2MJMA 2N1FA 2LWEA 1D2ZB 2P1HA 2L9MA 2HM2Q 3MOPA 2MN4A 4JUPA 1A1ZA 2OF5A 4M9ZA 4A2WA 2F1SA 1WMGA 2BBZA 3T6PA 4O6XA 2O71A 2NSNA 2G7RA 1D2ZA 2B1WA 3CL3A 2IB1A 2NZ7A 4JQWA 4E9MA 4EWIA 2MS8A 2N7ZA 4FH0A 1UCPA 4N1LA 2N83A 4N1JA 1YGOA 4DWNA 1A1WA 4RHWE 2DBHA 1DDFA 1PN5A 4M9XA 1WXPA 1N3KA 2N80A 1C15A 1CWWA 2KM6A 2YVIA 1FADA 4P4HI 4P4HA 4M9SA 2D96A 2YQFA 3CRDA 1E41A 3J6JA 2DBDA 2XV9A 2GF5A 3KATA 2LWDA 2M5VA 4LWDA 3LQRA 4RHWA 1CY5A 2N00A 4IZ7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3YGS P;  2MB9 A;  4O9F A;  4O9L A;  4A2Q A;  4N1K A;  2BBR A;  2YGS A;  2A5Y B;  2YU0 A;  2NAQ A;  1WH4 A;  2MPC A;  1E3Y A;  2LS7 A;  2A9I A;  3YGS C;  3J63 A;  4NQK A;  2OF5 H;  4I16 A;  4O7Q A;  4QOB A;  4ZBW A;  3EZQ B;  1NGR A;  2DO9 A;  3MOP G;  3LQQ A;  4F44 A;  1Z6T A;  2L6A A;  4D8O A;  2MS7 A;  2DBG A;  4IZA B;  3MOP K;  4UZ0 A;  1DGN A;  2DBF A;  3EZQ A;  2KN6 A;  1ICH A;  4IZ5 E;  2VGQ A;  4F42 A;  3QF2 A;  2N97 A;  2N1F A;  2LWE A;  1D2Z B;  2P1H A;  2L9M A;  2HM2 Q;  3MOP A;  2MN4 A;  4JUP A;  1A1Z A;  2OF5 A;  4M9Z A;  4A2W A;  2F1S A;  1WMG A;  2BBZ A;  3T6P A;  4O6X A;  2O71 A;  2NSN A;  2G7R A;  1D2Z A;  2B1W A;  3CL3 A;  2IB1 A;  2NZ7 A;  4JQW A;  4E9M A;  4EWI A;  2MS8 A;  2N7Z A;  4FH0 A;  1UCP A;  4N1L A;  2N83 A;  4N1J A;  1YGO A;  4DWN A;  1A1W A;  4RHW E;  2DBH A;  1DDF A;  1PN5 A;  4M9X A;  1WXP A;  1N3K A;  2N80 A;  1C15 A;  1CWW A;  2KM6 A;  2YVI A;  1FAD A;  4P4H I;  4P4H A;  4M9S A;  2D96 A;  2YQF A;  3CRD A;  1E41 A;  3J6J A;  2DBD A;  2GF5 A;  3KAT A;  2LWD A;  2M5V A;  4LWD A;  3LQR A;  4RHW A;  1CY5 A;  2N00 A;  4IZ7 B; 
#chains in the Genus database with same CATH topology
 3YGS P;  2MB9 A;  4O9F A;  4O9L A;  4A2Q A;  4N1K A;  2BBR A;  2YGS A;  2A5Y B;  2YU0 A;  2NAQ A;  1WH4 A;  2MPC A;  1E3Y A;  2LS7 A;  2A9I A;  3YGS C;  3J63 A;  4NQK A;  2OF5 H;  4I16 A;  4O7Q A;  4QOB A;  4ZBW A;  3EZQ B;  1NGR A;  2DO9 A;  3MOP G;  3LQQ A;  4F44 A;  1Z6T A;  2L6A A;  4D8O A;  2MS7 A;  2DBG A;  4IZA B;  3MOP K;  4UZ0 A;  1DGN A;  2DBF A;  3EZQ A;  2KN6 A;  1ICH A;  4IZ5 E;  2VGQ A;  4F42 A;  3QF2 A;  2N97 A;  2MJM A;  2N1F A;  2LWE A;  1D2Z B;  2P1H A;  2L9M A;  2HM2 Q;  3MOP A;  2MN4 A;  4JUP A;  1A1Z A;  2OF5 A;  4M9Z A;  4A2W A;  2F1S A;  1WMG A;  2BBZ A;  3T6P A;  4O6X A;  2O71 A;  2NSN A;  2G7R A;  1D2Z A;  2B1W A;  3CL3 A;  2IB1 A;  2NZ7 A;  4JQW A;  4E9M A;  4EWI A;  2MS8 A;  2N7Z A;  4FH0 A;  1UCP A;  4N1L A;  2N83 A;  4N1J A;  1YGO A;  4DWN A;  1A1W A;  4RHW E;  2DBH A;  1DDF A;  1PN5 A;  4M9X A;  1WXP A;  1N3K A;  2N80 A;  1C15 A;  1CWW A;  2KM6 A;  2YVI A;  1FAD A;  4P4H I;  4P4H A;  4M9S A;  2D96 A;  2YQF A;  3CRD A;  1E41 A;  3J6J A;  2DBD A;  2XV9 A;  2GF5 A;  3KAT A;  2LWD A;  2M5V A;  4LWD A;  3LQR A;  4RHW A;  1CY5 A;  2N00 A;  4IZ7 B; 
#chains in the Genus database with same CATH homology
 3YGS P;  2MB9 A;  4O9F A;  4O9L A;  4A2Q A;  4N1K A;  2BBR A;  2YGS A;  2A5Y B;  2YU0 A;  2NAQ A;  1WH4 A;  2MPC A;  1E3Y A;  2LS7 A;  2A9I A;  3YGS C;  3J63 A;  4NQK A;  2OF5 H;  4I16 A;  4O7Q A;  4QOB A;  4ZBW A;  3EZQ B;  1NGR A;  2DO9 A;  3MOP G;  3LQQ A;  4F44 A;  1Z6T A;  2L6A A;  4D8O A;  2MS7 A;  2DBG A;  4IZA B;  3MOP K;  4UZ0 A;  1DGN A;  2DBF A;  3EZQ A;  2KN6 A;  1ICH A;  4IZ5 E;  2VGQ A;  4F42 A;  3QF2 A;  2N97 A;  2MJM A;  2N1F A;  2LWE A;  1D2Z B;  2P1H A;  2L9M A;  2HM2 Q;  3MOP A;  2MN4 A;  4JUP A;  1A1Z A;  2OF5 A;  4M9Z A;  4A2W A;  2F1S A;  1WMG A;  2BBZ A;  3T6P A;  4O6X A;  2O71 A;  2NSN A;  2G7R A;  1D2Z A;  2B1W A;  3CL3 A;  2IB1 A;  2NZ7 A;  4JQW A;  4E9M A;  4EWI A;  2MS8 A;  2N7Z A;  4FH0 A;  1UCP A;  4N1L A;  2N83 A;  4N1J A;  1YGO A;  4DWN A;  1A1W A;  4RHW E;  2DBH A;  1DDF A;  1PN5 A;  4M9X A;  1WXP A;  1N3K A;  2N80 A;  1C15 A;  1CWW A;  2KM6 A;  2YVI A;  1FAD A;  4P4H I;  4P4H A;  4M9S A;  2D96 A;  2YQF A;  3CRD A;  1E41 A;  3J6J A;  2DBD A;  2XV9 A;  2GF5 A;  3KAT A;  2LWD A;  2M5V A;  4LWD A;  3LQR A;  4RHW A;  1CY5 A;  2N00 A;  4IZ7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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