1PQ3A

Human arginase ii: crystal structure and physiological role in male and female sexual arousal
Total Genus 108
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
306
structure length
306
Chain Sequence
HSVAVIGAPFSQGQKRKGVEHGPAAIREAGLMKRLSSLGCHLKDFGDLSFTPVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGHARHCPDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQLATSEEEAKTTANLAVDVIASSFGQTREG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase II, mitochondrial precursor
publication title Human Arginase II: Crystal Structure and Physiological Role in Male and Female Sexual Arousal
pubmed doi rcsb
source organism Homo sapiens
total genus 108
structure length 306
sequence length 306
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2003-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1pq3A00
3KV2A 1WOHA 4IU0A 4IXVA 4Q3PA 1T5GA 1P8NA 3THJA 4GSMA 1P8QA 1HQHA 2PHAA 3M1RA 4CEVA 4I06A 4MYKA 1WVBA 1HQGA 3F80A 4Q3RC 4RHMA 1P8MA 3E8ZA 3TF3A 4RLAA 1TBHA 3E6VA 4IE3A 3SJTA 1HQXA 2ZAVA 1T4TA 4IE1A 3NIPA 1ZPGA 3DJ8A 1P8SA 3E8QA 1WOIA 4FCKA 1R1OA 4Q3SA 2CEVA 3NIOA 4MYFA 1ZPEA 4MYNA 2EIVA 5HJ9A 1HQ5A 4Q3TA 4Q3RA 1PQ3A 3MJLA 3LP7A 1GQ6A 1T4PA 4G3HA 2A0MA 2EF4A 3SL0A 1CEVA 3TH7A 3GMZA 1XFKA 1T4SA 3THEA 3SL1A 4RHQA 3NIQA 3LP4A 4IU5A 1T5FA 5CEVA 4IU1A 1P8PA 4Q40A 4GWDA 5RLAA 4GWCA 3GN0A 2PLLA 3MFVA 1T4RA 4HZEA 4GSZA 3CEVA 1HQFA 1TBJA 1WVAA 2RLAA 3MMRA 3THHA 4Q42A 4IE2A 1D3VA 2EF5A 4Q3VA 4MYLA 3PZLA 1P8RA 3SKKA 3E6KA 4RHJA 1TBLA 4GSVA 3LHLA 2AEBA 4Q3UA 1TA1A 1RLAA 3MFWA 4RHLA 4HWWA 4Q41A 3E9BA 4HXQA 4MXRA 3RLAA 2PHOA 4IU4A 5HJAA 1GQ7A 4RHIA 4FCIA 4IXUA 4Q3QA 4DZ4A 1P8OA 4ITYA 4RHKA 1WOGA
chains in the Genus database with same CATH superfamily
4ZUQA 3KV2A 1WOHA 5G0JA 4IU0A 4IXVA 4Q3PA 5EF7A 5EFBD 1VKGA 1W22A 5JI5A 5BWZA 1T5GA 1P8NA 3THJA 4ZUOA 4GSMA 3MZ7A 5EFJD 4QA2A 1P8QA 1HQHA 2PHAA 5EF8A 5DC5A 3M1RA 4LY1A 2VQOA 5THUA 3ZNRA 3EZTA 1ZZ0A 3F06A 3MZ6A 4BZ5A 2VQWG 4CEVA 4BZ7A 5EEMA 4CBTA 4I06A 5G1CA 4MYKA 1WVBA 1HQGA 3F80A 4Q3RC 4QA6A 4BKXB 5THSA 4RHMA 3Q9EA 3MZ4A 4RN2A 1P8MA 3E8ZA 5G11A 5IWGA 3TF3A 5D1BA 3F0RA 4RLAA 5G0HA 1TBHA 3E6VA 4IE3A 3SFHA 3SJTA 1HQXA 3MZ3A 2ZAVA 1T4TA 5FCWA 4IE1A 3NIPA 1ZPGA 3DJ8A 1P8SA 5ICNB 5D1CA 3E8QA 1WOIA 4FCKA 5EFGA 5LI3A 4QA4A 2V5XA 1R1OA 4Q3SA 1T67A 2CEVA 3EZPA 1C3PA 3NIOA 4MYFA 1ZPEA 4QA7A 2VQVA 4MYNA 2EIVA 5HJ9A 1HQ5A 4Q3TA 4Q3RA 1PQ3A 2VCGA 3MJLA 3LP7A 1GQ6A 4QA1A 4ZUMA 5G17A 5D1DA 1T4PA 5G10A 5THTA 1C3RA 4G3HA 2A0MA 2EF4A 3F07A 3SL0A 1CEVA 3TH7A 3GMZA 4QA0A 1XFKA 1T4SA 5DC7A 3THEA 4QA3A 3SL1A 4RHQA 3NIQA 3Q9CA 3LP4A 4IU5A 5DC8A 1T5FA 5EEFA 5DC6A 5CEVA 4IU1A 1P8PA 1C3SA 2V5WA 4Q40A 3Q9FA 3Q9BA 4ZUNA 2VQMA 4GWDA 5RLAA 2VQJA 4GWCA 3MAXA 3GN0A 2PLLA 3MFVA 1T4RA 3C0YA 4HZEA 5THVA 5G1AA 4GSZA 3CEVA 1HQFA 3C0ZA 5G0IA 1TBJA 1WVAA 2RLAA 3MMRA 5EEIA 3THHA 4Q42A 4IE2A 4RN1A 1D3VA 2EF5A 3C10A 3EW8A 5IX0A 3RQDA 5EFNA 4RN0A 3SFFA 4QA5A 4LXZA 4Q3VA 4MYLA 4CBYA 1T69A 3PZLA 1P8RA 3SKKA 3EWFA 3E6KA 4RHJA 4ZURA 4ZUPA 5G3WA 1T64A 4A69A 5G0XA 1TBLA 4GSVA 3LHLA 2AEBA 4Q3UA 1TA1A 1RLAA 3MFWA 4RHLA 5EFHA 5EFKB 4HWWA 4Q41A 2GH6A 5G12A 3E9BA 4HXQA 4MXRA 5FUEA 5G13A 4BZ9A 5EENA 3RLAA 2PHOA 4IU4A 5G0GA 5HJAA 4BZ8A 2VQQA 5EEKA 4BZ6A 1GQ7A 5G1BA 4RHIA 4CQFA 4FCIA 4IXUA 4Q3QA 3ZNSA 1ZZ1A 1ZZ3A 4DZ4A 3MENA 5G0YA 1P8OA 5A2SA 4ITYA 4RHKA 1WOGA
chains in the Genus database with same CATH topology
3KV2A 1WOHA 4IU0A 4IXVA 4Q3PA 1T5GA 1P8NA 3THJA 4GSMA 1P8QA 1HQHA 2PHAA 3M1RA 4CEVA 4I06A 4MYKA 1WVBA 1HQGA 3F80A 4Q3RC 4RHMA 1P8MA 3E8ZA 3TF3A 4RLAA 1TBHA 3E6VA 4IE3A 3SJTA 1HQXA 2ZAVA 1T4TA 4IE1A 3NIPA 1ZPGA 3DJ8A 1P8SA 3E8QA 1WOIA 4FCKA 1R1OA 4Q3SA 2CEVA 3NIOA 4MYFA 1ZPEA 4MYNA 2EIVA 5HJ9A 1HQ5A 4Q3TA 4Q3RA 1PQ3A 3MJLA 3LP7A 1GQ6A 1T4PA 4G3HA 2A0MA 2EF4A 3SL0A 1CEVA 3TH7A 3GMZA 1XFKA 1T4SA 3THEA 3SL1A 4RHQA 3NIQA 3LP4A 4IU5A 1T5FA 5CEVA 4IU1A 1P8PA 4Q40A 4GWDA 5RLAA 4GWCA 3GN0A 2PLLA 3MFVA 1T4RA 4HZEA 4GSZA 3CEVA 1HQFA 1TBJA 1WVAA 2RLAA 3MMRA 3THHA 4Q42A 4IE2A 1D3VA 2EF5A 4Q3VA 4MYLA 3PZLA 1P8RA 3SKKA 3E6KA 4RHJA 1TBLA 4GSVA 3LHLA 2AEBA 4Q3UA 1TA1A 1RLAA 3MFWA 4RHLA 4HWWA 4Q41A 3E9BA 4HXQA 4MXRA 3RLAA 2PHOA 4IU4A 5HJAA 1GQ7A 4RHIA 4FCIA 4IXUA 4Q3QA 4DZ4A 1P8OA 4ITYA 4RHKA 1WOGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KV2 A;  1WOH A;  4IU0 A;  4IXV A;  4Q3P A;  1T5G A;  1P8N A;  3THJ A;  4GSM A;  1P8Q A;  1HQH A;  2PHA A;  3M1R A;  4CEV A;  4I06 A;  4MYK A;  1WVB A;  1HQG A;  3F80 A;  4Q3R C;  4RHM A;  1P8M A;  3E8Z A;  3TF3 A;  4RLA A;  1TBH A;  3E6V A;  4IE3 A;  3SJT A;  1HQX A;  2ZAV A;  1T4T A;  4IE1 A;  3NIP A;  1ZPG A;  3DJ8 A;  1P8S A;  3E8Q A;  1WOI A;  4FCK A;  1R1O A;  4Q3S A;  2CEV A;  3NIO A;  4MYF A;  1ZPE A;  4MYN A;  2EIV A;  5HJ9 A;  1HQ5 A;  4Q3T A;  4Q3R A;  1PQ3 A;  3MJL A;  3LP7 A;  1GQ6 A;  1T4P A;  4G3H A;  2A0M A;  2EF4 A;  3SL0 A;  1CEV A;  3TH7 A;  3GMZ A;  1XFK A;  1T4S A;  3THE A;  3SL1 A;  4RHQ A;  3NIQ A;  3LP4 A;  4IU5 A;  1T5F A;  5CEV A;  4IU1 A;  1P8P A;  4Q40 A;  4GWD A;  5RLA A;  4GWC A;  3GN0 A;  2PLL A;  3MFV A;  1T4R A;  4HZE A;  4GSZ A;  3CEV A;  1HQF A;  1TBJ A;  1WVA A;  2RLA A;  3MMR A;  3THH A;  4Q42 A;  4IE2 A;  1D3V A;  2EF5 A;  4Q3V A;  4MYL A;  3PZL A;  1P8R A;  3SKK A;  3E6K A;  4RHJ A;  1TBL A;  4GSV A;  3LHL A;  2AEB A;  4Q3U A;  1TA1 A;  1RLA A;  3MFW A;  4RHL A;  4HWW A;  4Q41 A;  3E9B A;  4HXQ A;  4MXR A;  3RLA A;  2PHO A;  4IU4 A;  5HJA A;  1GQ7 A;  4RHI A;  4FCI A;  4IXU A;  4Q3Q A;  4DZ4 A;  1P8O A;  4ITY A;  4RHK A;  1WOG A; 
#chains in the Genus database with same CATH topology
 4ZUQ A;  3KV2 A;  1WOH A;  5G0J A;  4IU0 A;  4IXV A;  4Q3P A;  5EF7 A;  5EFB D;  1VKG A;  1W22 A;  5JI5 A;  5BWZ A;  1T5G A;  1P8N A;  3THJ A;  4ZUO A;  4GSM A;  3MZ7 A;  5EFJ D;  4QA2 A;  1P8Q A;  1HQH A;  2PHA A;  5EF8 A;  5DC5 A;  3M1R A;  4LY1 A;  2VQO A;  5THU A;  3ZNR A;  3EZT A;  1ZZ0 A;  3F06 A;  3MZ6 A;  4BZ5 A;  2VQW G;  4CEV A;  4BZ7 A;  5EEM A;  4CBT A;  4I06 A;  5G1C A;  4MYK A;  1WVB A;  1HQG A;  3F80 A;  4Q3R C;  4QA6 A;  4BKX B;  5THS A;  4RHM A;  3Q9E A;  3MZ4 A;  4RN2 A;  1P8M A;  3E8Z A;  5G11 A;  5IWG A;  3TF3 A;  5D1B A;  3F0R A;  4RLA A;  5G0H A;  1TBH A;  3E6V A;  4IE3 A;  3SFH A;  3SJT A;  1HQX A;  3MZ3 A;  2ZAV A;  1T4T A;  5FCW A;  4IE1 A;  3NIP A;  1ZPG A;  3DJ8 A;  1P8S A;  5ICN B;  5D1C A;  3E8Q A;  1WOI A;  4FCK A;  5EFG A;  5LI3 A;  4QA4 A;  2V5X A;  1R1O A;  4Q3S A;  1T67 A;  2CEV A;  3EZP A;  1C3P A;  3NIO A;  4MYF A;  1ZPE A;  4QA7 A;  2VQV A;  4MYN A;  2EIV A;  5HJ9 A;  1HQ5 A;  4Q3T A;  4Q3R A;  1PQ3 A;  2VCG A;  3MJL A;  3LP7 A;  1GQ6 A;  4QA1 A;  4ZUM A;  5G17 A;  5D1D A;  1T4P A;  5G10 A;  5THT A;  1C3R A;  4G3H A;  2A0M A;  2EF4 A;  3F07 A;  3SL0 A;  1CEV A;  3TH7 A;  3GMZ A;  4QA0 A;  1XFK A;  1T4S A;  5DC7 A;  3THE A;  4QA3 A;  3SL1 A;  4RHQ A;  3NIQ A;  3Q9C A;  3LP4 A;  4IU5 A;  5DC8 A;  1T5F A;  5EEF A;  5DC6 A;  5CEV A;  4IU1 A;  1P8P A;  1C3S A;  2V5W A;  4Q40 A;  3Q9F A;  3Q9B A;  4ZUN A;  2VQM A;  4GWD A;  5RLA A;  2VQJ A;  4GWC A;  3MAX A;  3GN0 A;  2PLL A;  3MFV A;  1T4R A;  3C0Y A;  4HZE A;  5THV A;  5G1A A;  4GSZ A;  3CEV A;  1HQF A;  3C0Z A;  5G0I A;  1TBJ A;  1WVA A;  2RLA A;  3MMR A;  5EEI A;  3THH A;  4Q42 A;  4IE2 A;  4RN1 A;  1D3V A;  2EF5 A;  3C10 A;  3EW8 A;  5IX0 A;  3RQD A;  5EFN A;  4RN0 A;  3SFF A;  4QA5 A;  4LXZ A;  4Q3V A;  4MYL A;  4CBY A;  1T69 A;  3PZL A;  1P8R A;  3SKK A;  3EWF A;  3E6K A;  4RHJ A;  4ZUR A;  4ZUP A;  5G3W A;  1T64 A;  4A69 A;  5G0X A;  1TBL A;  4GSV A;  3LHL A;  2AEB A;  4Q3U A;  1TA1 A;  1RLA A;  3MFW A;  4RHL A;  5EFH A;  5EFK B;  4HWW A;  4Q41 A;  2GH6 A;  5G12 A;  3E9B A;  4HXQ A;  4MXR A;  5FUE A;  5G13 A;  4BZ9 A;  5EEN A;  3RLA A;  2PHO A;  4IU4 A;  5G0G A;  5HJA A;  4BZ8 A;  2VQQ A;  5EEK A;  4BZ6 A;  1GQ7 A;  5G1B A;  4RHI A;  4CQF A;  4FCI A;  4IXU A;  4Q3Q A;  3ZNS A;  1ZZ1 A;  1ZZ3 A;  4DZ4 A;  3MEN A;  5G0Y A;  1P8O A;  5A2S A;  4ITY A;  4RHK A;  1WOG A; 
#chains in the Genus database with same CATH homology
 3KV2 A;  1WOH A;  4IU0 A;  4IXV A;  4Q3P A;  1T5G A;  1P8N A;  3THJ A;  4GSM A;  1P8Q A;  1HQH A;  2PHA A;  3M1R A;  4CEV A;  4I06 A;  4MYK A;  1WVB A;  1HQG A;  3F80 A;  4Q3R C;  4RHM A;  1P8M A;  3E8Z A;  3TF3 A;  4RLA A;  1TBH A;  3E6V A;  4IE3 A;  3SJT A;  1HQX A;  2ZAV A;  1T4T A;  4IE1 A;  3NIP A;  1ZPG A;  3DJ8 A;  1P8S A;  3E8Q A;  1WOI A;  4FCK A;  1R1O A;  4Q3S A;  2CEV A;  3NIO A;  4MYF A;  1ZPE A;  4MYN A;  2EIV A;  5HJ9 A;  1HQ5 A;  4Q3T A;  4Q3R A;  1PQ3 A;  3MJL A;  3LP7 A;  1GQ6 A;  1T4P A;  4G3H A;  2A0M A;  2EF4 A;  3SL0 A;  1CEV A;  3TH7 A;  3GMZ A;  1XFK A;  1T4S A;  3THE A;  3SL1 A;  4RHQ A;  3NIQ A;  3LP4 A;  4IU5 A;  1T5F A;  5CEV A;  4IU1 A;  1P8P A;  4Q40 A;  4GWD A;  5RLA A;  4GWC A;  3GN0 A;  2PLL A;  3MFV A;  1T4R A;  4HZE A;  4GSZ A;  3CEV A;  1HQF A;  1TBJ A;  1WVA A;  2RLA A;  3MMR A;  3THH A;  4Q42 A;  4IE2 A;  1D3V A;  2EF5 A;  4Q3V A;  4MYL A;  3PZL A;  1P8R A;  3SKK A;  3E6K A;  4RHJ A;  1TBL A;  4GSV A;  3LHL A;  2AEB A;  4Q3U A;  1TA1 A;  1RLA A;  3MFW A;  4RHL A;  4HWW A;  4Q41 A;  3E9B A;  4HXQ A;  4MXR A;  3RLA A;  2PHO A;  4IU4 A;  5HJA A;  1GQ7 A;  4RHI A;  4FCI A;  4IXU A;  4Q3Q A;  4DZ4 A;  1P8O A;  4ITY A;  4RHK A;  1WOG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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