1PRNA

Refined structure of porin from rhodopseudomonas blastica and comparison with the porin from rhodobacter capsulatus
Total Genus 75
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
289
structure length
289
Chain Sequence
EISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAKLRMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGYEASSFGDAQSSFFAYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Integral membrane protein porin
source organism Rhodobacter blasticus
publication title Refined structure of the porin from Rhodopseudomonas blastica. Comparison with the porin from Rhodobacter capsulatus.
pubmed doi rcsb
molecule keywords PORIN
total genus 75
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1994-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13609 Porin_4 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 1prnA00
4FT6A 4LSEA 7PRNA 2K4TA 6PRNA 3UPGA 2ZLDA 4KR4A 4D65A 2FGRA 4JFBA 4RJWA 3VZWX 4LSHA 2O4VA 4GCQA 2XE3A 3PRNA 4LSFA 1MPFA 2Y0KA 4FOZA 3SYSA 3SY7A 1HXXA 3T24A 4FMSA 8PRNA 1OSMA 3VZTX 3SYBA 2ODJA 3K19A 5FVNA 4BUMX 3PORA 2J4UP 1OPFA 1E54A 3SZVA 2QTKA 2XE5A 4FSOA 3NSGA 1PHOA 3EMNX 3HW9A 4KRAA 2PORA 5DL6A 2FGQX 2XG6A 4RJXA 3VZUX 4D5UA 2Y0HA 4LSIA 3T0SA 3A2SX 3WI5A 1HXUA 4FSPA 4FRXA 3O0EA 3SZDA 1GFMA 1H6S1 1PRNA 2Y0LA 1GFQA 5PRNA 3JTYA 1GFNA 4GCSA 3HWBA 3VY8X 3POQA 2Y2XA 3POXA 3VY9X 5DL7A 5DL5A 2ZFGA 4AUIA 4C69X 2XE2A 3UU2A 2XE1A 5JDPA 2PRNA 3SY9A 3POUA 3T20A 5DL8A 3WI4A 2J1NA 1GFOA 1BT9A 1GFPA 4GCPA 4FRTA 1BH3A 4KR8A 4D64A 2OMFA 1HXTA 3FYXA
chains in the Genus database with same CATH superfamily
4FT6A 4LSEA 7PRNA 2K4TA 6PRNA 3UPGA 2ZLDA 4N59A 4FZMA 3KVDD 4K3CA 4KR4A 4D65A 2KZ7B 2W80C 2FGRA 2N2MA 3AA1B 3KZIO 4JFBA 4RJWA 3VE1A 4Z3TA 3DA3A 4AYID 3VZWX 4PUXA 3LK42 2WJQA 2F1TA 4F4BA 4PR7A 3BRZA 3AA0A 4LSHA 2O4VA 4GCQA 4AKRA 5IYUA 2R8AA 2R88A 4C4VA 4UB6O 2X27X 2XE3A 3AA0B 3PRNA 4LSFA 4U9CA 5E79O 5KAIO 1MPFA 2Y0KA 4FOZA 4E1SA 4C4VB 1MM5A 1QJPA 3SYSA 3SY7A 4RL9A 1HXXA 2YPVA 2R4PA 4XNKA 5AFUK 1BXWA 3A0HO 3T24A 4FMSA 4UB8O 3PGSA 1QJ9A 4PJ0O 1OSMA 4O4XA 8PRNA 4O3XB 5D5DA 2K0LA 3PGRA 3VZTX 2KC0A 3SYBA 5AFUL 4N58A 2ODJA 5G26A 3K19A 1ORMA 4N74A 5FVNA 4BUMX 3PORA 2N2LA 2J4UP 3C5OA 1OPFA 1ZHZA 2IWVA 3GP6A 1T1LA 1E54A 5H2FO 2KXPA 2QTKA 2XE5A 2JMMA 3NJTA 1P4TA 4FSOA 5T5FA 3PQUA 3SZVA 3NSGA 3WU2O 5GTIO 2KXPB 2M07A 1THQA 1Q9GA 1PHOA 2ERVA 3LK41 4AKRB 5KAFO 4CTDA 4G75A 3EMNX 5ADXK 1T16A 2IWWA 5B5EO 4FZNA 5EE2A 1ZHYA 3HW9A 3V8UA 4FUVA 2PORA 3HOLA 4KRAA 4O3ZA 5DL6A 2FGQX 2XG6A 4RJXA 1YS5A 4O3WA 3VZUX 4D5UA 5ADXL 2Y0HA 1ZHXA 4IL6O 4LSIA 4K3BA 3UAQA 3T0SA 3A2SX 5G38A 1HXUA 2R4NA 3WI5A 2F1VA 4JCHA 4FSPA 3AAAA 3HOEA 3AAEA 3O0EA 4FRXA 4O49A 3SZDA 1GFMA 1H6S1 1PRNA 2Y0LA 4AKMA 1GFQA 2R89A 4B61A 3AAAB 3AAEB 5TISO 5PRNA 4AZLA 3JTYA 4GHBA 4C00A 1GFNA 4GCSA 3HWBA 5GTHO 4AYNA 4FZLA 3DWNA 1ZHWA 3QRCA 2WJRA 4FESA 3POQA 1MM4A 2MHLA 2Y2XA 3VY8X 1S5LO 5B66O 3BS0A 5GV0A 2F1CX 2JQYA 3POXA 3LK3A 3VY9X 5DL7A 5DL5A 2ZFGA 2Y7SA 3AA6A 4AUIA 4AYMC 4C69X 2WVPA 4AYDC 3RBHA 2KZ7A 3AA1A 3LK3B 1QJ8A 3DZMA 2M06A 2XMXA 1IZNA 2XE2A 3AA6B 5G3AA 2X9KA 3DWOX 3PGUA 3UU2A 4FQEA 4RLBA 1IZNB 3VE2A 2XE1A 5JDPA 2PRNA 3AA7A 4GF4A 3SY9A 2YNKA 2KDYA 3POUA 2AXTO 3T20A 3BRYA 5DL8A 3AA7B 2R4LA 3PF1A 3LK2A 2R4OA 4E1TA 3WI4A 2W81C 2J1NA 4O4UA 4QQ1A 2LFUA 3LK2B 1GFOA 2XTQA 1BT9A 1ZHTA 1G90A 3A0BO 1GFPA 4GCPA 1Q9FA 5G39A 2GE4A 2XTRA 4FRTA 1BH3A 2MNHA 3QRAA 4KR8A 4AYEC 2LHFA 4AFKA 3JCUO 4D64A 3PQSA 2OMFA 4N75A 1HXTA 4O3YA 4RLCA 4G76A 3DA4A 3G7GA 4XNLA 3TZGA 3FYXA
chains in the Genus database with same CATH topology
4FT6A 4LSEA 7PRNA 2K4TA 6PRNA 3UPGA 2ZLDA 4N59A 4FZMA 3KVDD 4KR4A 4D65A 2KZ7B 2W80C 2FGRA 2N2MA 3AA1B 4JFBA 4RJWA 3VE1A 4Z3TA 3DA3A 3VZWX 4PUXA 3LK42 2F1TA 4F4BA 4LSHA 3AA0A 4AKRA 2O4VA 4GCQA 5IYUA 4AYID 2X27X 2XE3A 3AA0B 3PRNA 4LSFA 4U9CA 1MPFA 2Y0KA 4FOZA 4E1SA 1MM5A 1QJPA 3SYSA 3SY7A 4RL9A 1HXXA 2YPVA 4XNKA 5AFUK 1BXWA 3T24A 4FMSA 1QJ9A 8PRNA 1OSMA 4O4XA 4O3XB 5D5DA 2K0LA 3VZTX 2KC0A 3SYBA 5AFUL 4N58A 2ODJA 5G26A 3K19A 1ORMA 5FVNA 4BUMX 3PORA 2N2LA 2J4UP 3C5OA 1OPFA 1ZHZA 3GP6A 1E54A 2KXPA 2QTKA 2XE5A 2JMMA 3SZVA 1P4TA 4FSOA 5T5FA 3PQUA 3NSGA 2KXPB 2M07A 1THQA 1Q9GA 1PHOA 2ERVA 3LK41 4AKRB 4G75A 3EMNX 5ADXK 4FZNA 5EE2A 1ZHYA 3HW9A 3V8UA 4FUVA 2PORA 3HOLA 4KRAA 4O3ZA 5DL6A 2FGQX 2XG6A 4RJXA 1YS5A 4O3WA 3VZUX 4D5UA 5ADXL 2Y0HA 1ZHXA 4LSIA 3UAQA 3T0SA 3A2SX 3WI5A 1HXUA 2F1VA 4JCHA 4FSPA 3AAAA 3HOEA 3AAEA 3O0EA 4FRXA 4O49A 3SZDA 1GFMA 1H6S1 1PRNA 2Y0LA 4B61A 1GFQA 3AAAB 3AAEB 5PRNA 4AZLA 3JTYA 4GHBA 1GFNA 4GCSA 3HWBA 4AYNA 4FZLA 1ZHWA 3QRCA 4FESA 3VY8X 3POQA 1MM4A 2MHLA 2Y2XA 4AKMA 5GV0A 3POXA 3LK3A 3VY9X 5DL7A 5DL5A 2ZFGA 2Y7SA 3AA6A 4AUIA 4AYMC 4C69X 4AYDC 3RBHA 2KZ7A 3AA1A 3LK3B 1QJ8A 2M06A 2XMXA 1IZNA 2XE2A 3AA6B 3UU2A 4RLBA 1IZNB 3VE2A 2XE1A 5JDPA 2PRNA 3AA7A 4GF4A 3SY9A 2YNKA 2KDYA 3POUA 3T20A 5DL8A 3AA7B 3LK2A 4E1TA 3WI4A 2W81C 2J1NA 4O4UA 4QQ1A 2LFUA 3LK2B 2XTQA 1GFOA 1BT9A 1ZHTA 1G90A 1GFPA 4GCPA 1Q9FA 2GE4A 2XTRA 4FRTA 1BH3A 2MNHA 3QRAA 4KR8A 4AYEC 2LHFA 4AFKA 4D64A 3PQSA 2OMFA 1HXTA 4O3YA 4RLCA 4G76A 3DA4A 3G7GA 4XNLA 3TZGA 3FYXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FT6 A;  4LSE A;  7PRN A;  2K4T A;  6PRN A;  3UPG A;  2ZLD A;  4KR4 A;  4D65 A;  2FGR A;  4JFB A;  4RJW A;  3VZW X;  4LSH A;  2O4V A;  4GCQ A;  2XE3 A;  3PRN A;  4LSF A;  1MPF A;  2Y0K A;  4FOZ A;  3SYS A;  3SY7 A;  1HXX A;  3T24 A;  4FMS A;  8PRN A;  1OSM A;  3VZT X;  3SYB A;  2ODJ A;  3K19 A;  5FVN A;  4BUM X;  3POR A;  2J4U P;  1OPF A;  1E54 A;  3SZV A;  2QTK A;  2XE5 A;  4FSO A;  3NSG A;  1PHO A;  3EMN X;  3HW9 A;  4KRA A;  2POR A;  5DL6 A;  2FGQ X;  2XG6 A;  4RJX A;  3VZU X;  4D5U A;  2Y0H A;  4LSI A;  3T0S A;  3A2S X;  3WI5 A;  1HXU A;  4FSP A;  4FRX A;  3O0E A;  3SZD A;  1GFM A;  1H6S 1;  1PRN A;  2Y0L A;  1GFQ A;  5PRN A;  3JTY A;  1GFN A;  4GCS A;  3HWB A;  3VY8 X;  3POQ A;  2Y2X A;  3POX A;  3VY9 X;  5DL7 A;  5DL5 A;  2ZFG A;  4AUI A;  4C69 X;  2XE2 A;  3UU2 A;  2XE1 A;  5JDP A;  2PRN A;  3SY9 A;  3POU A;  3T20 A;  5DL8 A;  3WI4 A;  2J1N A;  1GFO A;  1BT9 A;  1GFP A;  4GCP A;  4FRT A;  1BH3 A;  4KR8 A;  4D64 A;  2OMF A;  1HXT A;  3FYX A; 
#chains in the Genus database with same CATH topology
 4FT6 A;  4LSE A;  7PRN A;  2K4T A;  6PRN A;  3UPG A;  2ZLD A;  4N59 A;  4FZM A;  3KVD D;  4K3C A;  4KR4 A;  4D65 A;  2KZ7 B;  2W80 C;  2FGR A;  2N2M A;  3AA1 B;  3KZI O;  4JFB A;  4RJW A;  3VE1 A;  4Z3T A;  3DA3 A;  4AYI D;  3VZW X;  4PUX A;  3LK4 2;  2WJQ A;  2F1T A;  4F4B A;  4PR7 A;  3BRZ A;  3AA0 A;  4LSH A;  2O4V A;  4GCQ A;  4AKR A;  5IYU A;  2R8A A;  2R88 A;  4C4V A;  4UB6 O;  2X27 X;  2XE3 A;  3AA0 B;  3PRN A;  4LSF A;  4U9C A;  5E79 O;  5KAI O;  1MPF A;  2Y0K A;  4FOZ A;  4E1S A;  4C4V B;  1MM5 A;  1QJP A;  3SYS A;  3SY7 A;  4RL9 A;  1HXX A;  2YPV A;  2R4P A;  4XNK A;  5AFU K;  1BXW A;  3A0H O;  3T24 A;  4FMS A;  4UB8 O;  3PGS A;  1QJ9 A;  4PJ0 O;  1OSM A;  4O4X A;  8PRN A;  4O3X B;  5D5D A;  2K0L A;  3PGR A;  3VZT X;  2KC0 A;  3SYB A;  5AFU L;  4N58 A;  2ODJ A;  5G26 A;  3K19 A;  1ORM A;  4N74 A;  5FVN A;  4BUM X;  3POR A;  2N2L A;  2J4U P;  3C5O A;  1OPF A;  1ZHZ A;  2IWV A;  3GP6 A;  1T1L A;  1E54 A;  5H2F O;  2KXP A;  2QTK A;  2XE5 A;  2JMM A;  3NJT A;  1P4T A;  4FSO A;  5T5F A;  3PQU A;  3SZV A;  3NSG A;  3WU2 O;  5GTI O;  2KXP B;  2M07 A;  1THQ A;  1Q9G A;  1PHO A;  2ERV A;  3LK4 1;  4AKR B;  5KAF O;  4CTD A;  4G75 A;  3EMN X;  5ADX K;  1T16 A;  2IWW A;  5B5E O;  4FZN A;  5EE2 A;  1ZHY A;  3HW9 A;  3V8U A;  4FUV A;  2POR A;  3HOL A;  4KRA A;  4O3Z A;  5DL6 A;  2FGQ X;  2XG6 A;  4RJX A;  1YS5 A;  4O3W A;  3VZU X;  4D5U A;  5ADX L;  2Y0H A;  1ZHX A;  4IL6 O;  4LSI A;  4K3B A;  3UAQ A;  3T0S A;  3A2S X;  5G38 A;  1HXU A;  2R4N A;  3WI5 A;  2F1V A;  4JCH A;  4FSP A;  3AAA A;  3HOE A;  3AAE A;  3O0E A;  4FRX A;  4O49 A;  3SZD A;  1GFM A;  1H6S 1;  1PRN A;  2Y0L A;  4AKM A;  1GFQ A;  2R89 A;  4B61 A;  3AAA B;  3AAE B;  5TIS O;  5PRN A;  4AZL A;  3JTY A;  4GHB A;  4C00 A;  1GFN A;  4GCS A;  3HWB A;  5GTH O;  4AYN A;  4FZL A;  3DWN A;  1ZHW A;  3QRC A;  2WJR A;  4FES A;  3POQ A;  1MM4 A;  2MHL A;  2Y2X A;  3VY8 X;  1S5L O;  5B66 O;  3BS0 A;  5GV0 A;  2F1C X;  2JQY A;  3POX A;  3LK3 A;  3VY9 X;  5DL7 A;  5DL5 A;  2ZFG A;  2Y7S A;  3AA6 A;  4AUI A;  4AYM C;  4C69 X;  2WVP A;  4AYD C;  3RBH A;  2KZ7 A;  3AA1 A;  3LK3 B;  1QJ8 A;  3DZM A;  2M06 A;  2XMX A;  1IZN A;  2XE2 A;  3AA6 B;  5G3A A;  2X9K A;  3DWO X;  3PGU A;  3UU2 A;  4FQE A;  4RLB A;  1IZN B;  3VE2 A;  2XE1 A;  5JDP A;  2PRN A;  3AA7 A;  4GF4 A;  3SY9 A;  2YNK A;  2KDY A;  3POU A;  2AXT O;  3T20 A;  3BRY A;  5DL8 A;  3AA7 B;  2R4L A;  3PF1 A;  3LK2 A;  2R4O A;  4E1T A;  3WI4 A;  2W81 C;  2J1N A;  4O4U A;  4QQ1 A;  2LFU A;  3LK2 B;  1GFO A;  2XTQ A;  1BT9 A;  1ZHT A;  1G90 A;  3A0B O;  1GFP A;  4GCP A;  1Q9F A;  5G39 A;  2GE4 A;  2XTR A;  4FRT A;  1BH3 A;  2MNH A;  3QRA A;  4KR8 A;  4AYE C;  2LHF A;  4AFK A;  3JCU O;  4D64 A;  3PQS A;  2OMF A;  4N75 A;  1HXT A;  4O3Y A;  4RLC A;  4G76 A;  3DA4 A;  3G7G A;  4XNL A;  3TZG A;  3FYX A; 
#chains in the Genus database with same CATH homology
 4FT6 A;  4LSE A;  7PRN A;  2K4T A;  6PRN A;  3UPG A;  2ZLD A;  4N59 A;  4FZM A;  3KVD D;  4KR4 A;  4D65 A;  2KZ7 B;  2W80 C;  2FGR A;  2N2M A;  3AA1 B;  4JFB A;  4RJW A;  3VE1 A;  4Z3T A;  3DA3 A;  3VZW X;  4PUX A;  3LK4 2;  2F1T A;  4F4B A;  4LSH A;  3AA0 A;  4AKR A;  2O4V A;  4GCQ A;  5IYU A;  4AYI D;  2X27 X;  2XE3 A;  3AA0 B;  3PRN A;  4LSF A;  4U9C A;  1MPF A;  2Y0K A;  4FOZ A;  4E1S A;  1MM5 A;  1QJP A;  3SYS A;  3SY7 A;  4RL9 A;  1HXX A;  2YPV A;  4XNK A;  5AFU K;  1BXW A;  3T24 A;  4FMS A;  1QJ9 A;  8PRN A;  1OSM A;  4O4X A;  4O3X B;  5D5D A;  2K0L A;  3VZT X;  2KC0 A;  3SYB A;  5AFU L;  4N58 A;  2ODJ A;  5G26 A;  3K19 A;  1ORM A;  5FVN A;  4BUM X;  3POR A;  2N2L A;  2J4U P;  3C5O A;  1OPF A;  1ZHZ A;  3GP6 A;  1E54 A;  2KXP A;  2QTK A;  2XE5 A;  2JMM A;  3SZV A;  1P4T A;  4FSO A;  5T5F A;  3PQU A;  3NSG A;  2KXP B;  2M07 A;  1THQ A;  1Q9G A;  1PHO A;  2ERV A;  3LK4 1;  4AKR B;  4G75 A;  3EMN X;  5ADX K;  4FZN A;  5EE2 A;  1ZHY A;  3HW9 A;  3V8U A;  4FUV A;  2POR A;  3HOL A;  4KRA A;  4O3Z A;  5DL6 A;  2FGQ X;  2XG6 A;  4RJX A;  1YS5 A;  4O3W A;  3VZU X;  4D5U A;  5ADX L;  2Y0H A;  1ZHX A;  4LSI A;  3UAQ A;  3T0S A;  3A2S X;  3WI5 A;  1HXU A;  2F1V A;  4JCH A;  4FSP A;  3AAA A;  3HOE A;  3AAE A;  3O0E A;  4FRX A;  4O49 A;  3SZD A;  1GFM A;  1H6S 1;  1PRN A;  2Y0L A;  4B61 A;  1GFQ A;  3AAA B;  3AAE B;  5PRN A;  4AZL A;  3JTY A;  4GHB A;  1GFN A;  4GCS A;  3HWB A;  4AYN A;  4FZL A;  1ZHW A;  3QRC A;  4FES A;  3VY8 X;  3POQ A;  1MM4 A;  2MHL A;  2Y2X A;  4AKM A;  5GV0 A;  3POX A;  3LK3 A;  3VY9 X;  5DL7 A;  5DL5 A;  2ZFG A;  2Y7S A;  3AA6 A;  4AUI A;  4AYM C;  4C69 X;  4AYD C;  3RBH A;  2KZ7 A;  3AA1 A;  3LK3 B;  1QJ8 A;  2M06 A;  2XMX A;  1IZN A;  2XE2 A;  3AA6 B;  3UU2 A;  4RLB A;  1IZN B;  3VE2 A;  2XE1 A;  5JDP A;  2PRN A;  3AA7 A;  4GF4 A;  3SY9 A;  2YNK A;  2KDY A;  3POU A;  3T20 A;  5DL8 A;  3AA7 B;  3LK2 A;  4E1T A;  3WI4 A;  2W81 C;  2J1N A;  4O4U A;  4QQ1 A;  2LFU A;  3LK2 B;  2XTQ A;  1GFO A;  1BT9 A;  1ZHT A;  1G90 A;  1GFP A;  4GCP A;  1Q9F A;  2GE4 A;  2XTR A;  4FRT A;  1BH3 A;  2MNH A;  3QRA A;  4KR8 A;  4AYE C;  2LHF A;  4AFK A;  4D64 A;  3PQS A;  2OMF A;  1HXT A;  4O3Y A;  4RLC A;  4G76 A;  3DA4 A;  3G7G A;  4XNL A;  3TZG A;  3FYX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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