1PRZA

Crystal structure of pseudouridine synthase rlud catalytic module
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
252
structure length
252
Chain Sequence
ARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ribosomal large subunit pseudouridine synthase D
publication title Crystal structure of the RluD pseudouridine Synthase catalytic module, an enzyme that modifies 23S rRNA and is essential for normal cell growth of Escherichia coli
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase
total genus 62
structure length 252
sequence length 252
ec nomenclature ec 5.4.99.23: 23S rRNA pseudouridine(1911/1915/1917) synthase.
pdb deposition date 2003-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00849 PseudoU_synth_2 RNA pseudouridylate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 1przA01
1ZE1A 1KSLA 1V9FA 1R3FA 3LWOA 2AUSA 3LWQA 1PRZA 3LWPA 1QYUA 1SGVA 3LWRA 2RFKA 3HJYA 3UAIA 2HVYA 3DH3A 1K8WA 2APOA 1R3EA 3MQKA 1V9KA 4LABA 3HJWA 2EY4A 1KSKA 1XPIA 2I82A 4LGTA 3LWVA 1KSVA 2ISTA 1ZE2A 3HAXA 2AB4A 1ZL3A 3U28A
chains in the Genus database with same CATH superfamily
1ZE1A 1KSLA 1V9FA 1R3FA 1Z2ZA 3LWOA 2AUSA 3LWQA 1PRZA 3LWPA 1QYUA 1SGVA 3LWRA 2RFKA 3HJYA 3UAIA 2HVYA 3DH3A 1K8WA 2APOA 1R3EA 3MQKA 1SB7A 1V9KA 4LABA 3HJWA 2EY4A 1KSKA 1XPIA 2I82A 1SI7A 4LGTA 1SZWA 3LWVA 1KSVA 2ISTA 1ZE2A 3HAXA 2AB4A 1ZL3A 3U28A
chains in the Genus database with same CATH topology
1ZE1A 1KSLA 1V9FA 1R3FA 1Z2ZA 3LWOA 2AUSA 3LWQA 1PRZA 3LWPA 1QYUA 1SGVA 3LWRA 2RFKA 3HJYA 3UAIA 2HVYA 3DH3A 1K8WA 2APOA 1R3EA 3MQKA 1SB7A 1V9KA 4LABA 3HJWA 2EY4A 1KSKA 1XPIA 2I82A 1SI7A 4LGTA 1SZWA 3LWVA 1KSVA 2ISTA 1ZE2A 3HAXA 2AB4A 1ZL3A 3U28A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZE1 A;  1KSL A;  1V9F A;  1R3F A;  3LWO A;  2AUS A;  3LWQ A;  1PRZ A;  3LWP A;  1QYU A;  1SGV A;  3LWR A;  2RFK A;  3HJY A;  3UAI A;  2HVY A;  3DH3 A;  1K8W A;  2APO A;  1R3E A;  3MQK A;  1V9K A;  4LAB A;  3HJW A;  2EY4 A;  1KSK A;  1XPI A;  2I82 A;  4LGT A;  3LWV A;  1KSV A;  2IST A;  1ZE2 A;  3HAX A;  2AB4 A;  1ZL3 A;  3U28 A; 
#chains in the Genus database with same CATH topology
 1ZE1 A;  1KSL A;  1V9F A;  1R3F A;  1Z2Z A;  3LWO A;  2AUS A;  3LWQ A;  1PRZ A;  3LWP A;  1QYU A;  1SGV A;  3LWR A;  2RFK A;  3HJY A;  3UAI A;  2HVY A;  3DH3 A;  1K8W A;  2APO A;  1R3E A;  3MQK A;  1SB7 A;  1V9K A;  4LAB A;  3HJW A;  2EY4 A;  1KSK A;  1XPI A;  2I82 A;  1SI7 A;  4LGT A;  1SZW A;  3LWV A;  1KSV A;  2IST A;  1ZE2 A;  3HAX A;  2AB4 A;  1ZL3 A;  3U28 A; 
#chains in the Genus database with same CATH homology
 1ZE1 A;  1KSL A;  1V9F A;  1R3F A;  1Z2Z A;  3LWO A;  2AUS A;  3LWQ A;  1PRZ A;  3LWP A;  1QYU A;  1SGV A;  3LWR A;  2RFK A;  3HJY A;  3UAI A;  2HVY A;  3DH3 A;  1K8W A;  2APO A;  1R3E A;  3MQK A;  1SB7 A;  1V9K A;  4LAB A;  3HJW A;  2EY4 A;  1KSK A;  1XPI A;  2I82 A;  1SI7 A;  4LGT A;  1SZW A;  3LWV A;  1KSV A;  2IST A;  1ZE2 A;  3HAX A;  2AB4 A;  1ZL3 A;  3U28 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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