1PS2A

High resolution nmr solution structure of human ps2, 19 structures
Total Genus 3
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
60
structure length
60
Chain Sequence
EAQTETCTVAPRERQNCGFPGVTPSQCANKGCCFDDTVRGVPWCFYPNTIDVPPEEESEF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Growth factor
molecule keywords PS2
publication title High-resolution solution structure of human pNR-2/pS2: a single trefoil motif protein.
pubmed doi rcsb
source organism Homo sapiens
total genus 3
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 1997-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00088 Trefoil Trefoil (P-type) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.110.10 Few Secondary Structures Irregular Spasmolytic Protein; domain 1 Spasmolytic Protein, domain 1 1ps2A00
2PSPA 1HI7A 3L4VA 2QLYA 3L4UA 1PS2A 3CTTA 3TOPA 1PSPA 3TONA 1PE31 2QMJA 3L4XA 3L4ZA 3LPPA 3L4TA 1E9TA 1PCPA 3LPOA 3L4WA 3L4YA
chains in the Genus database with same CATH superfamily
2PSPA 1HI7A 3L4VA 2QLYA 3L4UA 1PS2A 3CTTA 3TOPA 1PSPA 3TONA 1PE31 2QMJA 3L4XA 3L4ZA 3LPPA 3L4TA 1E9TA 1PCPA 1XU6A 3LPOA 3L4WA 3L4YA
chains in the Genus database with same CATH topology
2PSPA 1HI7A 3L4VA 2QLYA 3L4UA 1PS2A 3CTTA 3TOPA 1PSPA 3TONA 1PE31 2QMJA 3L4XA 3L4ZA 3LPPA 3L4TA 1E9TA 1PCPA 3LPOA 3L4WA 3L4YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PSP A;  1HI7 A;  3L4V A;  2QLY A;  3L4U A;  1PS2 A;  3CTT A;  3TOP A;  1PSP A;  3TON A;  1PE3 1;  2QMJ A;  3L4X A;  3L4Z A;  3LPP A;  3L4T A;  1E9T A;  1PCP A;  3LPO A;  3L4W A;  3L4Y A; 
#chains in the Genus database with same CATH topology
 2PSP A;  1HI7 A;  3L4V A;  2QLY A;  3L4U A;  1PS2 A;  3CTT A;  3TOP A;  1PSP A;  3TON A;  1PE3 1;  2QMJ A;  3L4X A;  3L4Z A;  3LPP A;  3L4T A;  1E9T A;  1PCP A;  1XU6 A;  3LPO A;  3L4W A;  3L4Y A; 
#chains in the Genus database with same CATH homology
 2PSP A;  1HI7 A;  3L4V A;  2QLY A;  3L4U A;  1PS2 A;  3CTT A;  3TOP A;  1PSP A;  3TON A;  1PE3 1;  2QMJ A;  3L4X A;  3L4Z A;  3LPP A;  3L4T A;  1E9T A;  1PCP A;  3LPO A;  3L4W A;  3L4Y A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...