1PU8A

Crystal structure of h.pylori 3-methyladenine dna glycosylase (magiii) bound to 1,n6-ethenoadenine
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
215
structure length
214
Chain Sequence
LDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGIVEFSKQKLEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Helicobacter pylori
publication title Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases
pubmed doi rcsb
molecule keywords 3-METHYLADENINE DNA GLYCOSYLASE
total genus 85
structure length 214
sequence length 215
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1pu8A02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1pu8A01
2ABKA 1KG6A 1NGNA 4EJYA 1PU8A 1N3CA 2JHNA 3KTUA 1YQRA 1KG2A 2OFIA 1EBMA 4E9FA 3OGDA 1XG7A 1KO9A 4EW4A 4B24A 4B23A 1N3AA 4E9HA 1M3HA 4EJZA 3OH6A 2NOLA 3I0XA 1PU7A 2OFKA 1ORNA 1WEGA 2YG9A 4UOBA 1PU6A 3I0WA 2NOIA 3FSPA 1LWWA 4OFAA 3IHOA 1KEAA 1RRSA 3CVSA 3IH7A 4AI4A 4EA5A 4PIIA 4AIAA 5DPKA 3KNTA 3FHGA 4EA4A 4B21A 1KG5A 1MPGA 1KG3A 1MUNA 3N5NX 5AN4A 4B22A 1P59A 2I5WA 4AI5A 1N39A 3F0ZA 3N0UA 3CWAA 1KG4A 1HU0A 3D4VA 1FN7A 1YQKA 2NOEA 1DIZA 1RRQA 2XHIA 2JG6A 2YG8A 4DK9A 1LWVA 5KN8A 4EVVA 3CWTA 2NOFA 1MUYA 1XQPA 3G0QA 4E9EA 1P7MA 1PVSA 1WEIA 1KG7A 3CWSA 3FHFA 1LMZA 4UNFA 4EW0A 3CWUA 2H56A 2NOBA 1MUDA 1LWYA 3CVTA 4OFEA 2NOZA 4YPRA 3OH9A 1YQLA 1YQMA 3F10A 3CW7A 4YOQA 3S6IA 1NKUA 4YPHA 5CHZA 1M3QA 4E9GA 1KQJA 1ORPA 1WEFA 5KN9A 4HSBA 4OFHA 2JHJA 1VRLA 2NOHA 1XQOA
chains in the Genus database with same CATH superfamily
2ABKA 1KG6A 1NGNA 4EJYA 2V75A 3OYMA 3OS1A 1PU8A 5FRNA 1N3CA 4E7LA 3OYKA 2JHNA 3KTUA 1YQRA 1KG2A 2OFIA 1EBMA 3OYBA 3L2WA 4E9FA 3OGDA 1XG7A 1KO9A 4BDYA 4EW4A 4B24A 4B23A 2W03A 1N3AA 4E9HA 1M3HA 4EJZA 3OH6A 4BACA 2NOLA 3I0XA 1PU7A 2OFKA 1ORNA 1WEGA 2YG9A 3OYLA 2W04A 3L2VA 4UOBA 1PU6A 3OYJA 3I0WA 3FSPA 2JPSA 2NOIA 1LWWA 3R2XC 4OFAA 3IHOA 1KEAA 1U84A 3OYNA 1RRSA 3OYCA 3CVSA 3IH7A 4AI4A 4EA5A 4PIIA 4AIAA 5FROA 5DPKA 3KNTA 3FHGA 3NNQA 4EA4A 4B21A 1KG5A 5FRMA 1MPGA 3S3NA 1KG3A 1MUNA 3VW4A 3N5NX 5AN4A 4B22A 4BE2A 4ZTFA 1P59A 2I5WA 3OYFA 4AI5A 1N39A 3F0ZA 3N0UA 3CWAA 1KG4A 1HU0A 3D4VA 1FN7A 4E7IA 3OYDA 3L2UA 3OYAA 1YQKA 2NOEA 1DIZA 1RRQA 2XHIA 2JG6A 4E7KA 2YG8A 4DK9A 1LWVA 5KN8A 3LCNA 4EVVA 3CWTA 4E7HA 4E7JA 2NOFA 3OY9A 4BE1A 3L2RA 1MUYA 1XQPA 4BDZA 3G0QA 4E9EA 1P7MA 1PVSA 4BE0A 1WEIA 1KG7A 3CWSA 3FHFA 1LMZA 4IKFA 4UNFA 4EW0A 3S3OA 3CWUA 3OYHA 2H56A 2NOBA 4ZTJA 1MUDA 1LWYA 3CVTA 4OFEA 2NOZA 4YPRA 3OH9A 1YQLA 1YQMA 3L2QA 3F10A 3CW7A 4YOQA 3OS0A 3S6IA 1NKUA 4YPHA 3OYEA 5CHZA 4NZGA 1M3QA 3OYIA 3OS2A 4E9GA 1KQJA 3S3MA 1ORPA 1WEFA 5KN9A 4HSBA 4OFHA 2JHJA 3OYGA 1VRLA 2NOHA 1XQOA
chains in the Genus database with same CATH topology
2ABKA 1KG6A 1NGNA 4EJYA 1PU8A 1N3CA 2JHNA 3KTUA 1YQRA 1KG2A 2OFIA 1EBMA 4E9FA 3OGDA 1XG7A 1KO9A 4EW4A 4B24A 4B23A 1N3AA 4E9HA 1M3HA 4EJZA 3OH6A 2NOLA 3I0XA 1PU7A 2OFKA 1ORNA 1WEGA 2YG9A 4UOBA 1PU6A 3I0WA 2NOIA 3FSPA 1LWWA 4OFAA 3IHOA 1KEAA 1RRSA 3CVSA 3IH7A 4AI4A 4EA5A 4PIIA 4AIAA 5DPKA 3KNTA 3FHGA 4EA4A 4B21A 1KG5A 1MPGA 1KG3A 1MUNA 3N5NX 5AN4A 4B22A 1P59A 2I5WA 4AI5A 1N39A 3F0ZA 3N0UA 3CWAA 1KG4A 1HU0A 3D4VA 1FN7A 1YQKA 2NOEA 1DIZA 1RRQA 2XHIA 2JG6A 2YG8A 4DK9A 1LWVA 5KN8A 4EVVA 3CWTA 2NOFA 1MUYA 1XQPA 3G0QA 4E9EA 1P7MA 1PVSA 1WEIA 1KG7A 3CWSA 3FHFA 1LMZA 4UNFA 4EW0A 3CWUA 2H56A 2NOBA 1MUDA 1LWYA 3CVTA 4OFEA 2NOZA 4YPRA 3OH9A 1YQLA 1YQMA 3F10A 3CW7A 4YOQA 3S6IA 1NKUA 4YPHA 5CHZA 1M3QA 4E9GA 1KQJA 1ORPA 1WEFA 5KN9A 4HSBA 4OFHA 2JHJA 1VRLA 2NOHA 1XQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ABK A;  1KG6 A;  1NGN A;  4EJY A;  1PU8 A;  1N3C A;  2JHN A;  3KTU A;  1YQR A;  1KG2 A;  2OFI A;  1EBM A;  4E9F A;  3OGD A;  1XG7 A;  1KO9 A;  4EW4 A;  4B24 A;  4B23 A;  1N3A A;  4E9H A;  1M3H A;  4EJZ A;  3OH6 A;  2NOL A;  3I0X A;  1PU7 A;  2OFK A;  1ORN A;  1WEG A;  2YG9 A;  4UOB A;  1PU6 A;  3I0W A;  2NOI A;  3FSP A;  1LWW A;  4OFA A;  3IHO A;  1KEA A;  1RRS A;  3CVS A;  3IH7 A;  4AI4 A;  4EA5 A;  4PII A;  4AIA A;  5DPK A;  3KNT A;  3FHG A;  4EA4 A;  4B21 A;  1KG5 A;  1MPG A;  1KG3 A;  1MUN A;  3N5N X;  5AN4 A;  4B22 A;  1P59 A;  2I5W A;  4AI5 A;  1N39 A;  3F0Z A;  3N0U A;  3CWA A;  1KG4 A;  1HU0 A;  3D4V A;  1FN7 A;  1YQK A;  2NOE A;  1DIZ A;  1RRQ A;  2XHI A;  2JG6 A;  2YG8 A;  4DK9 A;  1LWV A;  5KN8 A;  4EVV A;  3CWT A;  2NOF A;  1MUY A;  1XQP A;  3G0Q A;  4E9E A;  1P7M A;  1PVS A;  1WEI A;  1KG7 A;  3CWS A;  3FHF A;  1LMZ A;  4UNF A;  4EW0 A;  3CWU A;  2H56 A;  2NOB A;  1MUD A;  1LWY A;  3CVT A;  4OFE A;  2NOZ A;  4YPR A;  3OH9 A;  1YQL A;  1YQM A;  3F10 A;  3CW7 A;  4YOQ A;  3S6I A;  1NKU A;  4YPH A;  5CHZ A;  1M3Q A;  4E9G A;  1KQJ A;  1ORP A;  1WEF A;  5KN9 A;  4HSB A;  4OFH A;  2JHJ A;  1VRL A;  2NOH A;  1XQO A; 
#chains in the Genus database with same CATH topology
 2ABK A;  1KG6 A;  1NGN A;  4EJY A;  2V75 A;  3OYM A;  3OS1 A;  1PU8 A;  5FRN A;  1N3C A;  4E7L A;  3OYK A;  2JHN A;  3KTU A;  1YQR A;  1KG2 A;  2OFI A;  1EBM A;  3OYB A;  3L2W A;  4E9F A;  3OGD A;  1XG7 A;  1KO9 A;  4BDY A;  4EW4 A;  4B24 A;  4B23 A;  2W03 A;  1N3A A;  4E9H A;  1M3H A;  4EJZ A;  3OH6 A;  4BAC A;  2NOL A;  3I0X A;  1PU7 A;  2OFK A;  1ORN A;  1WEG A;  2YG9 A;  3OYL A;  2W04 A;  3L2V A;  4UOB A;  1PU6 A;  3OYJ A;  3I0W A;  3FSP A;  2JPS A;  2NOI A;  1LWW A;  3R2X C;  4OFA A;  3IHO A;  1KEA A;  1U84 A;  3OYN A;  1RRS A;  3OYC A;  3CVS A;  3IH7 A;  4AI4 A;  4EA5 A;  4PII A;  4AIA A;  5FRO A;  5DPK A;  3KNT A;  3FHG A;  3NNQ A;  4EA4 A;  4B21 A;  1KG5 A;  5FRM A;  1MPG A;  3S3N A;  1KG3 A;  1MUN A;  3VW4 A;  3N5N X;  5AN4 A;  4B22 A;  4BE2 A;  4ZTF A;  1P59 A;  2I5W A;  3OYF A;  4AI5 A;  1N39 A;  3F0Z A;  3N0U A;  3CWA A;  1KG4 A;  1HU0 A;  3D4V A;  1FN7 A;  4E7I A;  3OYD A;  3L2U A;  3OYA A;  1YQK A;  2NOE A;  1DIZ A;  1RRQ A;  2XHI A;  2JG6 A;  4E7K A;  2YG8 A;  4DK9 A;  1LWV A;  5KN8 A;  3LCN A;  4EVV A;  3CWT A;  4E7H A;  4E7J A;  2NOF A;  3OY9 A;  4BE1 A;  3L2R A;  1MUY A;  1XQP A;  4BDZ A;  3G0Q A;  4E9E A;  1P7M A;  1PVS A;  4BE0 A;  1WEI A;  1KG7 A;  3CWS A;  3FHF A;  1LMZ A;  4IKF A;  4UNF A;  4EW0 A;  3S3O A;  3CWU A;  3OYH A;  2H56 A;  2NOB A;  4ZTJ A;  1MUD A;  1LWY A;  3CVT A;  4OFE A;  2NOZ A;  4YPR A;  3OH9 A;  1YQL A;  1YQM A;  3L2Q A;  3F10 A;  3CW7 A;  4YOQ A;  3OS0 A;  3S6I A;  1NKU A;  4YPH A;  3OYE A;  5CHZ A;  4NZG A;  1M3Q A;  3OYI A;  3OS2 A;  4E9G A;  1KQJ A;  3S3M A;  1ORP A;  1WEF A;  5KN9 A;  4HSB A;  4OFH A;  2JHJ A;  3OYG A;  1VRL A;  2NOH A;  1XQO A; 
#chains in the Genus database with same CATH homology
 2ABK A;  1KG6 A;  1NGN A;  4EJY A;  1PU8 A;  1N3C A;  2JHN A;  3KTU A;  1YQR A;  1KG2 A;  2OFI A;  1EBM A;  4E9F A;  3OGD A;  1XG7 A;  1KO9 A;  4EW4 A;  4B24 A;  4B23 A;  1N3A A;  4E9H A;  1M3H A;  4EJZ A;  3OH6 A;  2NOL A;  3I0X A;  1PU7 A;  2OFK A;  1ORN A;  1WEG A;  2YG9 A;  4UOB A;  1PU6 A;  3I0W A;  2NOI A;  3FSP A;  1LWW A;  4OFA A;  3IHO A;  1KEA A;  1RRS A;  3CVS A;  3IH7 A;  4AI4 A;  4EA5 A;  4PII A;  4AIA A;  5DPK A;  3KNT A;  3FHG A;  4EA4 A;  4B21 A;  1KG5 A;  1MPG A;  1KG3 A;  1MUN A;  3N5N X;  5AN4 A;  4B22 A;  1P59 A;  2I5W A;  4AI5 A;  1N39 A;  3F0Z A;  3N0U A;  3CWA A;  1KG4 A;  1HU0 A;  3D4V A;  1FN7 A;  1YQK A;  2NOE A;  1DIZ A;  1RRQ A;  2XHI A;  2JG6 A;  2YG8 A;  4DK9 A;  1LWV A;  5KN8 A;  4EVV A;  3CWT A;  2NOF A;  1MUY A;  1XQP A;  3G0Q A;  4E9E A;  1P7M A;  1PVS A;  1WEI A;  1KG7 A;  3CWS A;  3FHF A;  1LMZ A;  4UNF A;  4EW0 A;  3CWU A;  2H56 A;  2NOB A;  1MUD A;  1LWY A;  3CVT A;  4OFE A;  2NOZ A;  4YPR A;  3OH9 A;  1YQL A;  1YQM A;  3F10 A;  3CW7 A;  4YOQ A;  3S6I A;  1NKU A;  4YPH A;  5CHZ A;  1M3Q A;  4E9G A;  1KQJ A;  1ORP A;  1WEF A;  5KN9 A;  4HSB A;  4OFH A;  2JHJ A;  1VRL A;  2NOH A;  1XQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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