1PVWA

3,4-dihydroxy-2-butanone 4-phosphate synthase from m. jannaschii
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
219
structure length
219
Chain Sequence
NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHRKTFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGHVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords 3,4-dihydroxy-2-butanone 4-phosphate synthase
publication title Structure of 3,4-Dihydroxy-2-butanone 4-Phosphate Synthase from Methanococcus jannaschii in Complex with Divalent Metal Ions and the Substrate Ribulose 5-Phosphate: IMPLICATIONS FOR THE CATALYTIC MECHANISM
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
total genus 75
structure length 219
sequence length 219
chains with identical sequence B, C
ec nomenclature ec 4.1.99.12: 3,4-dihydroxy-2-butanone-4-phosphate synthase.
pdb deposition date 2003-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00926 DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.870.10 Alpha Beta Alpha-Beta Complex DHBP synthase DHBP synthase 1pvwA00
1K4IA 4P6CA 3LRJA 4P6PA 4FFJA 4I14A 3LS6A 1G57A 1K4LA 1TKSA 4P8EA 1PVYA 1K49A 1SNNA 3LQUA 1K4PA 3L7VA 3MIOA 2MX1A 2EQAA 1K4OA 4P8JA 1TKUA 2RISA 2RIUA 3H07A 1K7JA 4E1BA 1G58A 1HRUA 1JCUA 1KK9A 4P77A 1PVWA 3AJEA 3MGZA 1IEZA 3MK5A 4P6DA
chains in the Genus database with same CATH superfamily
1K4IA 3TSUA 3VEWA 4P6CA 3LRJA 4P6PA 4FFJA 4I14A 3LS6A 3TTCA 3VENA 1G57A 1K4LA 1TKSA 3VEOA 3VEXA 3VERA 4P8EA 1PVYA 3VESA 1K49A 3VTIA 1SNNA 3LQUA 1K4PA 3L7VA 3MIOA 2MX1A 3TTFA 2EQAA 1K4OA 3VF2A 4P8JA 1TKUA 3TTDA 3VEZA 2RISA 3TSPA 2RIUA 3H07A 3TSQA 1K7JA 3VTHA 4E1BA 1G58A 1HRUA 1JCUA 3VF4A 1KK9A 4P77A 1PVWA 3AJEA 3MGZA 3VETA 1IEZA 3MK5A 4P6DA
chains in the Genus database with same CATH topology
1K4IA 3TSUA 3VEWA 4P6CA 3LRJA 4P6PA 4FFJA 4I14A 3LS6A 3TTCA 3VENA 1G57A 1K4LA 1TKSA 3VEOA 3VEXA 3VERA 4P8EA 1PVYA 3VESA 1K49A 3VTIA 1SNNA 3LQUA 1K4PA 3L7VA 3MIOA 2MX1A 3TTFA 2EQAA 1K4OA 3VF2A 4P8JA 1TKUA 3TTDA 3VEZA 2RISA 3TSPA 2RIUA 3H07A 3TSQA 1K7JA 3VTHA 4E1BA 1G58A 1HRUA 1JCUA 3VF4A 1KK9A 4P77A 1PVWA 3AJEA 3MGZA 3VETA 1IEZA 3MK5A 4P6DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K4I A;  4P6C A;  3LRJ A;  4P6P A;  4FFJ A;  4I14 A;  3LS6 A;  1G57 A;  1K4L A;  1TKS A;  4P8E A;  1PVY A;  1K49 A;  1SNN A;  3LQU A;  1K4P A;  3L7V A;  3MIO A;  2MX1 A;  2EQA A;  1K4O A;  4P8J A;  1TKU A;  2RIS A;  2RIU A;  3H07 A;  1K7J A;  4E1B A;  1G58 A;  1HRU A;  1JCU A;  1KK9 A;  4P77 A;  1PVW A;  3AJE A;  3MGZ A;  1IEZ A;  3MK5 A;  4P6D A; 
#chains in the Genus database with same CATH topology
 1K4I A;  3TSU A;  3VEW A;  4P6C A;  3LRJ A;  4P6P A;  4FFJ A;  4I14 A;  3LS6 A;  3TTC A;  3VEN A;  1G57 A;  1K4L A;  1TKS A;  3VEO A;  3VEX A;  3VER A;  4P8E A;  1PVY A;  3VES A;  1K49 A;  3VTI A;  1SNN A;  3LQU A;  1K4P A;  3L7V A;  3MIO A;  2MX1 A;  3TTF A;  2EQA A;  1K4O A;  3VF2 A;  4P8J A;  1TKU A;  3TTD A;  3VEZ A;  2RIS A;  3TSP A;  2RIU A;  3H07 A;  3TSQ A;  1K7J A;  3VTH A;  4E1B A;  1G58 A;  1HRU A;  1JCU A;  3VF4 A;  1KK9 A;  4P77 A;  1PVW A;  3AJE A;  3MGZ A;  3VET A;  1IEZ A;  3MK5 A;  4P6D A; 
#chains in the Genus database with same CATH homology
 1K4I A;  3TSU A;  3VEW A;  4P6C A;  3LRJ A;  4P6P A;  4FFJ A;  4I14 A;  3LS6 A;  3TTC A;  3VEN A;  1G57 A;  1K4L A;  1TKS A;  3VEO A;  3VEX A;  3VER A;  4P8E A;  1PVY A;  3VES A;  1K49 A;  3VTI A;  1SNN A;  3LQU A;  1K4P A;  3L7V A;  3MIO A;  2MX1 A;  3TTF A;  2EQA A;  1K4O A;  3VF2 A;  4P8J A;  1TKU A;  3TTD A;  3VEZ A;  2RIS A;  3TSP A;  2RIU A;  3H07 A;  3TSQ A;  1K7J A;  3VTH A;  4E1B A;  1G58 A;  1HRU A;  1JCU A;  3VF4 A;  1KK9 A;  4P77 A;  1PVW A;  3AJE A;  3MGZ A;  3VET A;  1IEZ A;  3MK5 A;  4P6D A; 
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similar chains in the Genus database (?% sequence similarity)
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