1PXZA

1.7 angstrom crystal structure of jun a 1, the major allergen from cedar pollen
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
346
structure length
346
Chain Sequence
DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVVT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Jun a 1, the major cedar pollen allergen from Juniperus ashei, reveals a parallel beta-helical core.
pubmed doi rcsb
molecule tags Allergen
molecule keywords Major pollen allergen Jun a 1
total genus 125
structure length 346
sequence length 346
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1pxzA00
3B4NA 2O17A 3FY3A 1WMRA 1OFLA 2O1DA 3GQ8A 3ZSCA 4XN3A 4AVZA 1KCCA 4YZQA 2X6YA 3GQ9A 4YELA 2QY1A 3KRGA 2NTPA 2BSPA 4OJLA 1QJVA 2UVFA 4EW9A 1JRGA 1DBOA 1GQ8A 4NK8A 2NZMA 3JURA 3WWGA 1O8GA 4XOTA 4XNFA 2IQ7A 4XKVA 4I84A 3LMWA 4YEJA 1RMGA 5C1EA 5C1CA 4XMYA 1RWRA 4MXNA 4XKWA 2NTQA 1IDJA 1O8HA 3VMWA 3GQAA 4OJPA 3VMVA 2QX3A 1OOCA 3B8YA 2X85A 1K5CA 3EQOA 1H80A 1EE6A 2NSTA 1O8LA 1NHCA 3VSVA 1OGMX 4XLAA 1PXZA 4W8SA 2O04A 4OJ6A 2QXZA 1OFMA 4OZZA 1OGOX 4OJOA 2INUA 1O8IA 4NK6A 2VBEA 2VJIA 3SUCA 2X6WA 1BN8A 3GRHA 1DBGA 1VBLA 4PMHA 2O0VA 2EWEA 1O8JA 4YZAA 4U4BA 4XL9A 4HWVA 4YZ0A 4MR0A 4YZXA 3VSTA 2PECA 4XR6A 1KCDA 2VBKA 2VJJA 2PYGA 4XOPA 1BHEA 4XQFA 1QCXA 4U49A 4XLEA 1O88A 4Z06A 4Z05A 4W8TA 2NSPA 2NT9A 4URRA 3UW0A 4XN0A 1HG8A 2NTBA 1JTAA 1PLUA 2UVEA 4XLFA 4XORA 2INVA 1IA5A 3ZPPA 2NT6A 1X0CA 2ODLA 3T9GA 3EQNA 4XM3A 2Z8GA 4OJ5A 4W8RA 1O8DA 4OZYA 4XLHA 2O0WA 4XONA 1KTWA 1O8EA 3GQ7A 1XG2A 1IB4A 1CZFA 1RU4A 1IDKA 2VBMA 2X6XA 1O8FA 5AMVA 3VSUA 1O8MA 1O8KA 4XLCA 4Z03A 1AIRA 1PE9A 3B90A 4W8QA 2PYHA 4C2LA 2X3HA
chains in the Genus database with same CATH superfamily
3B4NA 2O17A 3FY3A 1WMRA 1OFLA 2O1DA 2QYUA 3GQ8A 4XN3A 3ZSCA 4AVZA 1KCCA 2XT2A 4YZQA 1TYVA 2X6YA 1TYWA 1EA0A 3GQ9A 4YELA 2QY1A 2BX6A 1HF2A 4YDTA 2VFMA 2XTYA 3KRGA 4YEIA 1LLWA 1LLZA 2J8KA 1OFDA 2NTPA 2BSPA 4OJLA 1QJVA 2B0RA 2UVFA 2XT4A 5JMCB 4EW9A 1TSPA 2BM4A 1JRGA 4YFOA 1DBOA 1GQ8A 1QQ1A 2VFNA 2XTWA 4OPWA 5DNSA 3PSZA 4NK8A 1L1IA 2NZMA 3JURA 3WWGA 1O8GA 4XOTA 1QRCA 3ML3A 2W7ZA 4OM9A 4XNFA 2IQ7A 4XKVA 4I84A 3LMWA 4YEJA 1RMGA 5C1EA 5C1CA 4XMYA 2BM7A 1RWRA 4MXNA 4XKWA 2NTQA 1IDJA 1O8HA 3VMWA 3GQAA 3TH0A 4OJPA 2IOUG 3VMVA 2QX3A 1OOCA 2O6WA 1K4ZA 1OFEA 2X85A 3B8YA 1K5CA 3EQOA 1H80A 1EE6A 2NSTA 1O8LA 1NHCA 3VSVA 1OGMX 4XLAA 2QZAA 2XTXA 3N6ZA 3P4GA 1PXZA 1LM1A 4W8SA 3SY2A 2O04A 4OJ6A 2QXZA 3JX8A 1OFMA 4OZZA 2BM6A 1OGOX 2BM5A 4OJOA 2INUA 1O8IA 4NK6A 2VBEA 1K8FA 2VJIA 3SUCA 2X6WA 1BN8A 3GRHA 1VBLA 1DBGA 4PMHA 1WXRA 1EZGA 2O0VA 2G0YA 2VFOA 1DABA 2EWEA 1O8JA 3PETA 4YZAA 4U4BA 4XL9A 4HWVA 4YZ0A 4MR0A 1QA2A 3NB2A 1CLWA 3PSSA 4YZXA 3VSTA 2PECA 4XR6A 4YCQA 4JRAC 3RIQA 1KCDA 2VBKA 1KQ5A 2VJJA 1QA1A 2PYGA 4XOPA 1BHEA 1QRBA 4XQFA 1QCXA 4U49A 4XLEA 1O88A 4Z06A 4Z05A 2J8IA 3H09A 4W8TA 2NSPA 2NT9A 4V02C 1TYXA 4URRA 3SZEA 3UW0A 4XN0A 1HG8A 2NTBA 3SQVA 1JTAA 1PLUA 2UVEA 4XLFA 2VFQA 2INVA 4XORA 3ZPPA 2NT6A 1IA5A 3AK5A 1X0CA 4YC5A 2ODLA 3T9GA 3EQNA 3BH7B 4XM3A 2Z8GA 4OJ5A 4W8RA 1O8DA 4OZYA 3BH6B 4XLHA 2VFPA 2O0WA 3LYCA 3N90A 5JLVC 4XONA 1KTWA 1O8EA 4KH3A 2YUHA 3GQ7A 1XG2A 1IB4A 1CZFA 1RU4A 1IDKA 2VBMA 2X6XA 1O8FA 5AMVA 3VSUA 1O8MA 2V5IA 1QA3A 2XC1A 1O8KA 3DU1X 4XLCA 3NAWA 1TYUA 3LJYA 1AIRA 1PE9A 3B90A 4Z03A 2F3LA 2PYHA 4W8QA 4C2LA 3SYJA 2X3HA
chains in the Genus database with same CATH topology
3B4NA 2O17A 3FY3A 1WMRA 1OFLA 2O1DA 3GQ8A 3ZSCA 4XN3A 4AVZA 1KCCA 4YZQA 2X6YA 3GQ9A 4YELA 2QY1A 3KRGA 2NTPA 2BSPA 4OJLA 1QJVA 2UVFA 4EW9A 1JRGA 1DBOA 1GQ8A 4NK8A 2NZMA 3JURA 3WWGA 1O8GA 4XOTA 4XNFA 2IQ7A 4XKVA 4I84A 3LMWA 4YEJA 1RMGA 5C1EA 5C1CA 4XMYA 1RWRA 4MXNA 4XKWA 2NTQA 1IDJA 1O8HA 3VMWA 3GQAA 4OJPA 3VMVA 2QX3A 1OOCA 3B8YA 2X85A 1K5CA 3EQOA 1H80A 1EE6A 2NSTA 1O8LA 1NHCA 3VSVA 1OGMX 4XLAA 1PXZA 4W8SA 2O04A 4OJ6A 2QXZA 1OFMA 4OZZA 1OGOX 4OJOA 2INUA 1O8IA 4NK6A 2VBEA 2VJIA 3SUCA 2X6WA 1BN8A 3GRHA 1DBGA 1VBLA 4PMHA 2O0VA 2EWEA 1O8JA 4YZAA 4U4BA 4XL9A 4HWVA 4YZ0A 4MR0A 4YZXA 3VSTA 2PECA 4XR6A 1KCDA 2VBKA 2VJJA 2PYGA 4XOPA 1BHEA 4XQFA 1QCXA 4U49A 4XLEA 1O88A 4Z06A 4Z05A 4W8TA 2NSPA 2NT9A 4URRA 3UW0A 4XN0A 1HG8A 2NTBA 1JTAA 1PLUA 2UVEA 4XLFA 4XORA 2INVA 1IA5A 3ZPPA 2NT6A 1X0CA 2ODLA 3T9GA 3EQNA 4XM3A 2Z8GA 4OJ5A 4W8RA 1O8DA 4OZYA 4XLHA 2O0WA 4XONA 1KTWA 1O8EA 3GQ7A 1XG2A 1IB4A 1CZFA 1RU4A 1IDKA 2VBMA 2X6XA 1O8FA 5AMVA 3VSUA 1O8MA 1O8KA 4XLCA 4Z03A 1AIRA 1PE9A 3B90A 4W8QA 2PYHA 4C2LA 2X3HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B4N A;  2O17 A;  3FY3 A;  1WMR A;  1OFL A;  2O1D A;  3GQ8 A;  3ZSC A;  4XN3 A;  4AVZ A;  1KCC A;  4YZQ A;  2X6Y A;  3GQ9 A;  4YEL A;  2QY1 A;  3KRG A;  2NTP A;  2BSP A;  4OJL A;  1QJV A;  2UVF A;  4EW9 A;  1JRG A;  1DBO A;  1GQ8 A;  4NK8 A;  2NZM A;  3JUR A;  3WWG A;  1O8G A;  4XOT A;  4XNF A;  2IQ7 A;  4XKV A;  4I84 A;  3LMW A;  4YEJ A;  1RMG A;  5C1E A;  5C1C A;  4XMY A;  1RWR A;  4MXN A;  4XKW A;  2NTQ A;  1IDJ A;  1O8H A;  3VMW A;  3GQA A;  4OJP A;  3VMV A;  2QX3 A;  1OOC A;  3B8Y A;  2X85 A;  1K5C A;  3EQO A;  1H80 A;  1EE6 A;  2NST A;  1O8L A;  1NHC A;  3VSV A;  1OGM X;  4XLA A;  1PXZ A;  4W8S A;  2O04 A;  4OJ6 A;  2QXZ A;  1OFM A;  4OZZ A;  1OGO X;  4OJO A;  2INU A;  1O8I A;  4NK6 A;  2VBE A;  2VJI A;  3SUC A;  2X6W A;  1BN8 A;  3GRH A;  1DBG A;  1VBL A;  4PMH A;  2O0V A;  2EWE A;  1O8J A;  4YZA A;  4U4B A;  4XL9 A;  4HWV A;  4YZ0 A;  4MR0 A;  4YZX A;  3VST A;  2PEC A;  4XR6 A;  1KCD A;  2VBK A;  2VJJ A;  2PYG A;  4XOP A;  1BHE A;  4XQF A;  1QCX A;  4U49 A;  4XLE A;  1O88 A;  4Z06 A;  4Z05 A;  4W8T A;  2NSP A;  2NT9 A;  4URR A;  3UW0 A;  4XN0 A;  1HG8 A;  2NTB A;  1JTA A;  1PLU A;  2UVE A;  4XLF A;  4XOR A;  2INV A;  1IA5 A;  3ZPP A;  2NT6 A;  1X0C A;  2ODL A;  3T9G A;  3EQN A;  4XM3 A;  2Z8G A;  4OJ5 A;  4W8R A;  1O8D A;  4OZY A;  4XLH A;  2O0W A;  4XON A;  1KTW A;  1O8E A;  3GQ7 A;  1XG2 A;  1IB4 A;  1CZF A;  1RU4 A;  1IDK A;  2VBM A;  2X6X A;  1O8F A;  5AMV A;  3VSU A;  1O8M A;  1O8K A;  4XLC A;  4Z03 A;  1AIR A;  1PE9 A;  3B90 A;  4W8Q A;  2PYH A;  4C2L A;  2X3H A; 
#chains in the Genus database with same CATH topology
 3B4N A;  2O17 A;  3FY3 A;  1WMR A;  1OFL A;  2O1D A;  2QYU A;  3GQ8 A;  4XN3 A;  3ZSC A;  4AVZ A;  1KCC A;  2XT2 A;  4YZQ A;  1TYV A;  2X6Y A;  1TYW A;  1EA0 A;  3GQ9 A;  4YEL A;  2QY1 A;  2BX6 A;  1HF2 A;  4YDT A;  2VFM A;  2XTY A;  3KRG A;  4YEI A;  1LLW A;  1LLZ A;  2J8K A;  1OFD A;  2NTP A;  2BSP A;  4OJL A;  1QJV A;  2B0R A;  2UVF A;  2XT4 A;  5JMC B;  4EW9 A;  1TSP A;  2BM4 A;  1JRG A;  4YFO A;  1DBO A;  1GQ8 A;  1QQ1 A;  2VFN A;  2XTW A;  4OPW A;  5DNS A;  3PSZ A;  4NK8 A;  1L1I A;  2NZM A;  3JUR A;  3WWG A;  1O8G A;  4XOT A;  1QRC A;  3ML3 A;  2W7Z A;  4OM9 A;  4XNF A;  2IQ7 A;  4XKV A;  4I84 A;  3LMW A;  4YEJ A;  1RMG A;  5C1E A;  5C1C A;  4XMY A;  2BM7 A;  1RWR A;  4MXN A;  4XKW A;  2NTQ A;  1IDJ A;  1O8H A;  3VMW A;  3GQA A;  3TH0 A;  4OJP A;  2IOU G;  3VMV A;  2QX3 A;  1OOC A;  2O6W A;  1K4Z A;  1OFE A;  2X85 A;  3B8Y A;  1K5C A;  3EQO A;  1H80 A;  1EE6 A;  2NST A;  1O8L A;  1NHC A;  3VSV A;  1OGM X;  4XLA A;  2QZA A;  2XTX A;  3N6Z A;  3P4G A;  1PXZ A;  1LM1 A;  4W8S A;  3SY2 A;  2O04 A;  4OJ6 A;  2QXZ A;  3JX8 A;  1OFM A;  4OZZ A;  2BM6 A;  1OGO X;  2BM5 A;  4OJO A;  2INU A;  1O8I A;  4NK6 A;  2VBE A;  1K8F A;  2VJI A;  3SUC A;  2X6W A;  1BN8 A;  3GRH A;  1VBL A;  1DBG A;  4PMH A;  1WXR A;  1EZG A;  2O0V A;  2G0Y A;  2VFO A;  1DAB A;  2EWE A;  1O8J A;  3PET A;  4YZA A;  4U4B A;  4XL9 A;  4HWV A;  4YZ0 A;  4MR0 A;  1QA2 A;  3NB2 A;  1CLW A;  3PSS A;  4YZX A;  3VST A;  2PEC A;  4XR6 A;  4YCQ A;  4JRA C;  3RIQ A;  1KCD A;  2VBK A;  1KQ5 A;  2VJJ A;  1QA1 A;  2PYG A;  4XOP A;  1BHE A;  1QRB A;  4XQF A;  1QCX A;  4U49 A;  4XLE A;  1O88 A;  4Z06 A;  4Z05 A;  2J8I A;  3H09 A;  4W8T A;  2NSP A;  2NT9 A;  4V02 C;  1TYX A;  4URR A;  3SZE A;  3UW0 A;  4XN0 A;  1HG8 A;  2NTB A;  3SQV A;  1JTA A;  1PLU A;  2UVE A;  4XLF A;  2VFQ A;  2INV A;  4XOR A;  3ZPP A;  2NT6 A;  1IA5 A;  3AK5 A;  1X0C A;  4YC5 A;  2ODL A;  3T9G A;  3EQN A;  3BH7 B;  4XM3 A;  2Z8G A;  4OJ5 A;  4W8R A;  1O8D A;  4OZY A;  3BH6 B;  4XLH A;  2VFP A;  2O0W A;  3LYC A;  3N90 A;  5JLV C;  4XON A;  1KTW A;  1O8E A;  4KH3 A;  2YUH A;  3GQ7 A;  1XG2 A;  1IB4 A;  1CZF A;  1RU4 A;  1IDK A;  2VBM A;  2X6X A;  1O8F A;  5AMV A;  3VSU A;  1O8M A;  2V5I A;  1QA3 A;  2XC1 A;  1O8K A;  3DU1 X;  4XLC A;  3NAW A;  1TYU A;  3LJY A;  1AIR A;  1PE9 A;  3B90 A;  4Z03 A;  2F3L A;  2PYH A;  4W8Q A;  4C2L A;  3SYJ A;  2X3H A; 
#chains in the Genus database with same CATH homology
 3B4N A;  2O17 A;  3FY3 A;  1WMR A;  1OFL A;  2O1D A;  3GQ8 A;  3ZSC A;  4XN3 A;  4AVZ A;  1KCC A;  4YZQ A;  2X6Y A;  3GQ9 A;  4YEL A;  2QY1 A;  3KRG A;  2NTP A;  2BSP A;  4OJL A;  1QJV A;  2UVF A;  4EW9 A;  1JRG A;  1DBO A;  1GQ8 A;  4NK8 A;  2NZM A;  3JUR A;  3WWG A;  1O8G A;  4XOT A;  4XNF A;  2IQ7 A;  4XKV A;  4I84 A;  3LMW A;  4YEJ A;  1RMG A;  5C1E A;  5C1C A;  4XMY A;  1RWR A;  4MXN A;  4XKW A;  2NTQ A;  1IDJ A;  1O8H A;  3VMW A;  3GQA A;  4OJP A;  3VMV A;  2QX3 A;  1OOC A;  3B8Y A;  2X85 A;  1K5C A;  3EQO A;  1H80 A;  1EE6 A;  2NST A;  1O8L A;  1NHC A;  3VSV A;  1OGM X;  4XLA A;  1PXZ A;  4W8S A;  2O04 A;  4OJ6 A;  2QXZ A;  1OFM A;  4OZZ A;  1OGO X;  4OJO A;  2INU A;  1O8I A;  4NK6 A;  2VBE A;  2VJI A;  3SUC A;  2X6W A;  1BN8 A;  3GRH A;  1DBG A;  1VBL A;  4PMH A;  2O0V A;  2EWE A;  1O8J A;  4YZA A;  4U4B A;  4XL9 A;  4HWV A;  4YZ0 A;  4MR0 A;  4YZX A;  3VST A;  2PEC A;  4XR6 A;  1KCD A;  2VBK A;  2VJJ A;  2PYG A;  4XOP A;  1BHE A;  4XQF A;  1QCX A;  4U49 A;  4XLE A;  1O88 A;  4Z06 A;  4Z05 A;  4W8T A;  2NSP A;  2NT9 A;  4URR A;  3UW0 A;  4XN0 A;  1HG8 A;  2NTB A;  1JTA A;  1PLU A;  2UVE A;  4XLF A;  4XOR A;  2INV A;  1IA5 A;  3ZPP A;  2NT6 A;  1X0C A;  2ODL A;  3T9G A;  3EQN A;  4XM3 A;  2Z8G A;  4OJ5 A;  4W8R A;  1O8D A;  4OZY A;  4XLH A;  2O0W A;  4XON A;  1KTW A;  1O8E A;  3GQ7 A;  1XG2 A;  1IB4 A;  1CZF A;  1RU4 A;  1IDK A;  2VBM A;  2X6X A;  1O8F A;  5AMV A;  3VSU A;  1O8M A;  1O8K A;  4XLC A;  4Z03 A;  1AIR A;  1PE9 A;  3B90 A;  4W8Q A;  2PYH A;  4C2L A;  2X3H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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