1PXZA

1.7 angstrom crystal structure of jun a 1, the major allergen from cedar pollen
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
346
structure length
346
Chain Sequence
DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVVT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Jun a 1, the major cedar pollen allergen from Juniperus ashei, reveals a parallel beta-helical core.
pubmed doi rcsb
molecule tags Allergen
molecule keywords Major pollen allergen Jun a 1
total genus 125
structure length 346
sequence length 346
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1pxzA00
1PXZA 4Z03A 1QJVA 1RMGA 4YELA 2PECA 2UVEA 1PE9A 3B90A 4XKWA 1O8LA 1OGOX 1KTWA 1NHCA 1O8DA 4XLFA 2VBMA 1HG8A 4XOPA 2O1DA 1XG2A 2X6YA 1CZFA 4MR0A 4W8QA 1BHEA 3FY3A 4OJ6A 2ODLA 3WWGA 3SUCA 4XL9A 2NSPA 5C1EA 5AMVA 1JRGA 1RWRA 4Z06A 2Z8GA 2NTPA 1O8JA 3UW0A 1O8FA 1KCCA 3GQ7A 4OZZA 4URRA 5C1CA 4XLHA 2X6XA 3VMVA 4I84A 4NK6A 4W8TA 4OJPA 4HWVA 4XOTA 4U4BA 2VJIA 2VBEA 1BN8A 1OFMA 1WMRA 4PMHA 2BSPA 4MXNA 4Z05A 1O8HA 4OJ5A 3VMWA 4XN3A 2NTQA 4OJOA 4OJLA 3T9GA 3LMWA 1O8KA 1IDJA 2PYGA 1OOCA 3B8YA 2IQ7A 4XMYA 4YEJA 4XLAA 2X6WA 4XN0A 4EW9A 2VBKA 1VBLA 2NSTA 1O88A 4NK8A 4XLEA 1K5CA 3VSUA 3GQ8A 1EE6A 4XQFA 2QY1A 1X0CA 2NTBA 3ZSCA 2O0WA 2NZMA 2UVFA 3ZPPA 1O8GA 4XM3A 4YZ0A 1H80A 2INVA 3GQAA 4C2LA 3GQ9A 4YZAA 1DBGA 1DBOA 1O8EA 4W8RA 2INUA 1GQ8A 1O8MA 4XR6A 1QCXA 2X85A 4XKVA 3JURA 3B4NA 2X3HA 1IDKA 2PYHA 2VJJA 4W8SA 3KRGA 1JTAA 1OFLA 4OZYA 4U49A 4XNFA 4YZXA 4AVZA 4XORA 2NT6A 1KCDA 2QX3A 3VSVA 1O8IA 2O04A 2NT9A 3EQNA 4XONA 1OGMX 1IB4A 3EQOA 3VSTA 1AIRA 2O0VA 2O17A 2QXZA 1IA5A 4XLCA 1PLUA 4YZQA 2EWEA 3GRHA 1RU4A
chains in the Genus database with same CATH superfamily
1PXZA 4Z03A 1LLWA 1QJVA 1RMGA 2VFNA 4OPWA 4YELA 3AK5A 2PECA 2UVEA 1K4ZA 1PE9A 2BM5A 3B90A 3PETA 1O8LA 1OGOX 2XC1A 2XTXA 4XKWA 1KTWA 1NHCA 3NAWA 1O8DA 4XLFA 3N90A 2VBMA 1HG8A 4XOPA 2O1DA 2XT2A 1XG2A 2X6YA 1CZFA 3JX8A 4MR0A 4W8QA 2W7ZA 1BHEA 3FY3A 4OJ6A 2ODLA 3WWGA 3SUCA 2BM6A 2QZAA 2V5IA 1KQ5A 4XL9A 1DABA 4YEIA 2NSPA 5JLVC 5C1EA 3SZEA 5AMVA 1JRGA 1RWRA 4Z06A 2G0YA 2NTPA 2Z8GA 2VFQA 1O8JA 1QQ1A 1O8FA 3UW0A 3GQ7A 1KCCA 4OZZA 4URRA 3H09A 4XLHA 2X6XA 3BH6B 3VMVA 5C1CA 4I84A 4NK6A 2J8IA 4W8TA 4OJPA 4HWVA 4XOTA 4U4BA 2VJIA 2VBEA 1OFEA 1TSPA 1BN8A 2XTWA 1OFMA 1WMRA 4PMHA 1LLZA 2BSPA 4MXNA 4Z05A 1O8HA 3PSZA 2XTYA 3ML3A 4OJ5A 1QRCA 4YFOA 1QA3A 3VMWA 4XN3A 3LJYA 2NTQA 4OJOA 3SQVA 4OJLA 3T9GA 3LMWA 1O8KA 1IDJA 2PYGA 1OOCA 3B8YA 5DNSA 5JMCB 2IQ7A 4XMYA 3NB2A 1QA1A 4YEJA 4XLAA 1L1IA 2X6WA 1LM1A 4XN0A 3PSSA 4EW9A 1TYWA 4YDTA 2VBKA 1VBLA 2NSTA 4JRAC 1QRBA 2F3LA 1O88A 4NK8A 4XLEA 4V02C 1K5CA 3VSUA 3GQ8A 4KH3A 1EE6A 4XQFA 4YC5A 2QY1A 1X0CA 2BM4A 1TYVA 2NTBA 3SY2A 3ZSCA 2O0WA 2NZMA 2BM7A 2UVFA 3ZPPA 1HF2A 1O8GA 4XM3A 4YZ0A 1H80A 2INVA 3GQAA 4C2LA 2IOUG 3GQ9A 3DU1X 1DBGA 4YZAA 3RIQA 2BX6A 1DBOA 1O8EA 4W8RA 2INUA 2O6WA 1GQ8A 1O8MA 4XR6A 2XT4A 1QCXA 2VFPA 2X85A 4XKVA 2J8KA 2B0RA 3JURA 3B4NA 3BH7B 4OM9A 2X3HA 1WXRA 1IDKA 2PYHA 2VJJA 2YUHA 4W8SA 3N6ZA 3KRGA 3P4GA 1TYXA 3TH0A 1TYUA 1JTAA 1OFLA 2VFMA 2QYUA 1K8FA 4OZYA 4U49A 4XNFA 4YZXA 4AVZA 1EA0A 3LYCA 4XORA 1OFDA 2NT6A 1KCDA 2QX3A 1QA2A 3VSVA 1O8IA 2O04A 2NT9A 3EQNA 4XONA 1OGMX 1IB4A 3EQOA 3SYJA 1EZGA 2VFOA 1AIRA 2O0VA 2O17A 2QXZA 3VSTA 1CLWA 1PLUA 4XLCA 2EWEA 4YZQA 1IA5A 3GRHA 1RU4A 4YCQA
chains in the Genus database with same CATH topology
1PXZA 4Z03A 1QJVA 1RMGA 4YELA 2PECA 2UVEA 1PE9A 3B90A 4XKWA 1O8LA 1OGOX 1KTWA 1NHCA 1O8DA 4XLFA 2VBMA 1HG8A 4XOPA 2O1DA 1XG2A 2X6YA 1CZFA 4MR0A 4W8QA 1BHEA 3FY3A 4OJ6A 2ODLA 3WWGA 3SUCA 4XL9A 2NSPA 5C1EA 5AMVA 1JRGA 1RWRA 4Z06A 2Z8GA 2NTPA 1O8JA 3UW0A 1O8FA 1KCCA 3GQ7A 4OZZA 4URRA 5C1CA 4XLHA 2X6XA 3VMVA 4I84A 4NK6A 4W8TA 4OJPA 4HWVA 4XOTA 4U4BA 2VJIA 2VBEA 1BN8A 1OFMA 1WMRA 4PMHA 2BSPA 4MXNA 4Z05A 1O8HA 4OJ5A 3VMWA 4XN3A 2NTQA 4OJOA 4OJLA 3T9GA 3LMWA 1O8KA 1IDJA 2PYGA 1OOCA 3B8YA 2IQ7A 4XMYA 4YEJA 4XLAA 2X6WA 4XN0A 4EW9A 2VBKA 1VBLA 2NSTA 1O88A 4NK8A 4XLEA 1K5CA 3VSUA 3GQ8A 1EE6A 4XQFA 2QY1A 1X0CA 2NTBA 3ZSCA 2O0WA 2NZMA 2UVFA 3ZPPA 1O8GA 4XM3A 4YZ0A 1H80A 2INVA 3GQAA 4C2LA 3GQ9A 4YZAA 1DBGA 1DBOA 1O8EA 4W8RA 2INUA 1GQ8A 1O8MA 4XR6A 1QCXA 2X85A 4XKVA 3JURA 3B4NA 2X3HA 1IDKA 2PYHA 2VJJA 4W8SA 3KRGA 1JTAA 1OFLA 4OZYA 4U49A 4XNFA 4YZXA 4AVZA 4XORA 2NT6A 1KCDA 2QX3A 3VSVA 1O8IA 2O04A 2NT9A 3EQNA 4XONA 1OGMX 1IB4A 3EQOA 3VSTA 1AIRA 2O0VA 2O17A 2QXZA 1IA5A 4XLCA 1PLUA 4YZQA 2EWEA 3GRHA 1RU4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PXZ A;  4Z03 A;  1QJV A;  1RMG A;  4YEL A;  2PEC A;  2UVE A;  1PE9 A;  3B90 A;  4XKW A;  1O8L A;  1OGO X;  1KTW A;  1NHC A;  1O8D A;  4XLF A;  2VBM A;  1HG8 A;  4XOP A;  2O1D A;  1XG2 A;  2X6Y A;  1CZF A;  4MR0 A;  4W8Q A;  1BHE A;  3FY3 A;  4OJ6 A;  2ODL A;  3WWG A;  3SUC A;  4XL9 A;  2NSP A;  5C1E A;  5AMV A;  1JRG A;  1RWR A;  4Z06 A;  2Z8G A;  2NTP A;  1O8J A;  3UW0 A;  1O8F A;  1KCC A;  3GQ7 A;  4OZZ A;  4URR A;  5C1C A;  4XLH A;  2X6X A;  3VMV A;  4I84 A;  4NK6 A;  4W8T A;  4OJP A;  4HWV A;  4XOT A;  4U4B A;  2VJI A;  2VBE A;  1BN8 A;  1OFM A;  1WMR A;  4PMH A;  2BSP A;  4MXN A;  4Z05 A;  1O8H A;  4OJ5 A;  3VMW A;  4XN3 A;  2NTQ A;  4OJO A;  4OJL A;  3T9G A;  3LMW A;  1O8K A;  1IDJ A;  2PYG A;  1OOC A;  3B8Y A;  2IQ7 A;  4XMY A;  4YEJ A;  4XLA A;  2X6W A;  4XN0 A;  4EW9 A;  2VBK A;  1VBL A;  2NST A;  1O88 A;  4NK8 A;  4XLE A;  1K5C A;  3VSU A;  3GQ8 A;  1EE6 A;  4XQF A;  2QY1 A;  1X0C A;  2NTB A;  3ZSC A;  2O0W A;  2NZM A;  2UVF A;  3ZPP A;  1O8G A;  4XM3 A;  4YZ0 A;  1H80 A;  2INV A;  3GQA A;  4C2L A;  3GQ9 A;  4YZA A;  1DBG A;  1DBO A;  1O8E A;  4W8R A;  2INU A;  1GQ8 A;  1O8M A;  4XR6 A;  1QCX A;  2X85 A;  4XKV A;  3JUR A;  3B4N A;  2X3H A;  1IDK A;  2PYH A;  2VJJ A;  4W8S A;  3KRG A;  1JTA A;  1OFL A;  4OZY A;  4U49 A;  4XNF A;  4YZX A;  4AVZ A;  4XOR A;  2NT6 A;  1KCD A;  2QX3 A;  3VSV A;  1O8I A;  2O04 A;  2NT9 A;  3EQN A;  4XON A;  1OGM X;  1IB4 A;  3EQO A;  3VST A;  1AIR A;  2O0V A;  2O17 A;  2QXZ A;  1IA5 A;  4XLC A;  1PLU A;  4YZQ A;  2EWE A;  3GRH A;  1RU4 A; 
#chains in the Genus database with same CATH topology
 1PXZ A;  4Z03 A;  1LLW A;  1QJV A;  1RMG A;  2VFN A;  4OPW A;  4YEL A;  3AK5 A;  2PEC A;  2UVE A;  1K4Z A;  1PE9 A;  2BM5 A;  3B90 A;  3PET A;  1O8L A;  1OGO X;  2XC1 A;  2XTX A;  4XKW A;  1KTW A;  1NHC A;  3NAW A;  1O8D A;  4XLF A;  3N90 A;  2VBM A;  1HG8 A;  4XOP A;  2O1D A;  2XT2 A;  1XG2 A;  2X6Y A;  1CZF A;  3JX8 A;  4MR0 A;  4W8Q A;  2W7Z A;  1BHE A;  3FY3 A;  4OJ6 A;  2ODL A;  3WWG A;  3SUC A;  2BM6 A;  2QZA A;  2V5I A;  1KQ5 A;  4XL9 A;  1DAB A;  4YEI A;  2NSP A;  5JLV C;  5C1E A;  3SZE A;  5AMV A;  1JRG A;  1RWR A;  4Z06 A;  2G0Y A;  2NTP A;  2Z8G A;  2VFQ A;  1O8J A;  1QQ1 A;  1O8F A;  3UW0 A;  3GQ7 A;  1KCC A;  4OZZ A;  4URR A;  3H09 A;  4XLH A;  2X6X A;  3BH6 B;  3VMV A;  5C1C A;  4I84 A;  4NK6 A;  2J8I A;  4W8T A;  4OJP A;  4HWV A;  4XOT A;  4U4B A;  2VJI A;  2VBE A;  1OFE A;  1TSP A;  1BN8 A;  2XTW A;  1OFM A;  1WMR A;  4PMH A;  1LLZ A;  2BSP A;  4MXN A;  4Z05 A;  1O8H A;  3PSZ A;  2XTY A;  3ML3 A;  4OJ5 A;  1QRC A;  4YFO A;  1QA3 A;  3VMW A;  4XN3 A;  3LJY A;  2NTQ A;  4OJO A;  3SQV A;  4OJL A;  3T9G A;  3LMW A;  1O8K A;  1IDJ A;  2PYG A;  1OOC A;  3B8Y A;  5DNS A;  5JMC B;  2IQ7 A;  4XMY A;  3NB2 A;  1QA1 A;  4YEJ A;  4XLA A;  1L1I A;  2X6W A;  1LM1 A;  4XN0 A;  3PSS A;  4EW9 A;  1TYW A;  4YDT A;  2VBK A;  1VBL A;  2NST A;  4JRA C;  1QRB A;  2F3L A;  1O88 A;  4NK8 A;  4XLE A;  4V02 C;  1K5C A;  3VSU A;  3GQ8 A;  4KH3 A;  1EE6 A;  4XQF A;  4YC5 A;  2QY1 A;  1X0C A;  2BM4 A;  1TYV A;  2NTB A;  3SY2 A;  3ZSC A;  2O0W A;  2NZM A;  2BM7 A;  2UVF A;  3ZPP A;  1HF2 A;  1O8G A;  4XM3 A;  4YZ0 A;  1H80 A;  2INV A;  3GQA A;  4C2L A;  2IOU G;  3GQ9 A;  3DU1 X;  1DBG A;  4YZA A;  3RIQ A;  2BX6 A;  1DBO A;  1O8E A;  4W8R A;  2INU A;  2O6W A;  1GQ8 A;  1O8M A;  4XR6 A;  2XT4 A;  1QCX A;  2VFP A;  2X85 A;  4XKV A;  2J8K A;  2B0R A;  3JUR A;  3B4N A;  3BH7 B;  4OM9 A;  2X3H A;  1WXR A;  1IDK A;  2PYH A;  2VJJ A;  2YUH A;  4W8S A;  3N6Z A;  3KRG A;  3P4G A;  1TYX A;  3TH0 A;  1TYU A;  1JTA A;  1OFL A;  2VFM A;  2QYU A;  1K8F A;  4OZY A;  4U49 A;  4XNF A;  4YZX A;  4AVZ A;  1EA0 A;  3LYC A;  4XOR A;  1OFD A;  2NT6 A;  1KCD A;  2QX3 A;  1QA2 A;  3VSV A;  1O8I A;  2O04 A;  2NT9 A;  3EQN A;  4XON A;  1OGM X;  1IB4 A;  3EQO A;  3SYJ A;  1EZG A;  2VFO A;  1AIR A;  2O0V A;  2O17 A;  2QXZ A;  3VST A;  1CLW A;  1PLU A;  4XLC A;  2EWE A;  4YZQ A;  1IA5 A;  3GRH A;  1RU4 A;  4YCQ A; 
#chains in the Genus database with same CATH homology
 1PXZ A;  4Z03 A;  1QJV A;  1RMG A;  4YEL A;  2PEC A;  2UVE A;  1PE9 A;  3B90 A;  4XKW A;  1O8L A;  1OGO X;  1KTW A;  1NHC A;  1O8D A;  4XLF A;  2VBM A;  1HG8 A;  4XOP A;  2O1D A;  1XG2 A;  2X6Y A;  1CZF A;  4MR0 A;  4W8Q A;  1BHE A;  3FY3 A;  4OJ6 A;  2ODL A;  3WWG A;  3SUC A;  4XL9 A;  2NSP A;  5C1E A;  5AMV A;  1JRG A;  1RWR A;  4Z06 A;  2Z8G A;  2NTP A;  1O8J A;  3UW0 A;  1O8F A;  1KCC A;  3GQ7 A;  4OZZ A;  4URR A;  5C1C A;  4XLH A;  2X6X A;  3VMV A;  4I84 A;  4NK6 A;  4W8T A;  4OJP A;  4HWV A;  4XOT A;  4U4B A;  2VJI A;  2VBE A;  1BN8 A;  1OFM A;  1WMR A;  4PMH A;  2BSP A;  4MXN A;  4Z05 A;  1O8H A;  4OJ5 A;  3VMW A;  4XN3 A;  2NTQ A;  4OJO A;  4OJL A;  3T9G A;  3LMW A;  1O8K A;  1IDJ A;  2PYG A;  1OOC A;  3B8Y A;  2IQ7 A;  4XMY A;  4YEJ A;  4XLA A;  2X6W A;  4XN0 A;  4EW9 A;  2VBK A;  1VBL A;  2NST A;  1O88 A;  4NK8 A;  4XLE A;  1K5C A;  3VSU A;  3GQ8 A;  1EE6 A;  4XQF A;  2QY1 A;  1X0C A;  2NTB A;  3ZSC A;  2O0W A;  2NZM A;  2UVF A;  3ZPP A;  1O8G A;  4XM3 A;  4YZ0 A;  1H80 A;  2INV A;  3GQA A;  4C2L A;  3GQ9 A;  4YZA A;  1DBG A;  1DBO A;  1O8E A;  4W8R A;  2INU A;  1GQ8 A;  1O8M A;  4XR6 A;  1QCX A;  2X85 A;  4XKV A;  3JUR A;  3B4N A;  2X3H A;  1IDK A;  2PYH A;  2VJJ A;  4W8S A;  3KRG A;  1JTA A;  1OFL A;  4OZY A;  4U49 A;  4XNF A;  4YZX A;  4AVZ A;  4XOR A;  2NT6 A;  1KCD A;  2QX3 A;  3VSV A;  1O8I A;  2O04 A;  2NT9 A;  3EQN A;  4XON A;  1OGM X;  1IB4 A;  3EQO A;  3VST A;  1AIR A;  2O0V A;  2O17 A;  2QXZ A;  1IA5 A;  4XLC A;  1PLU A;  4YZQ A;  2EWE A;  3GRH A;  1RU4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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