1PXZA

1.7 angstrom crystal structure of jun a 1, the major allergen from cedar pollen
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
346
structure length
346
Chain Sequence
DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVVT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Major pollen allergen Jun a 1
publication title Crystal structure of Jun a 1, the major cedar pollen allergen from Juniperus ashei, reveals a parallel beta-helical core.
pubmed doi rcsb
molecule tags Allergen
total genus 125
structure length 346
sequence length 346
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2003-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1pxzA00
4XOPA 4NK6A 1O8KA 2NTBA 4Z03A 4U49A 3KRGA 1KTWA 4YELA 1QCXA 1PLUA 1O8FA 2BSPA 1IDJA 4YZAA 1O8MA 2Z8GA 1OGOX 3VSVA 2ODLA 3VSUA 1K5CA 1OFLA 1RU4A 3GQAA 4YEJA 2O1DA 4Z05A 4XQFA 2NSTA 1JRGA 2VBKA 1EE6A 3EQOA 3VSTA 1NHCA 4XLCA 2PYGA 2VBMA 4OJ5A 5AMVA 1HG8A 1O8HA 1OFMA 3GQ9A 2UVFA 1KCDA 1IA5A 1O8GA 4AVZA 4OJOA 3T9GA 4XLEA 3SUCA 1BHEA 1PE9A 1PXZA 4HWVA 4URRA 2VBEA 1CZFA 4XKWA 1QJVA 2X6XA 2NZMA 4XNFA 1RWRA 2VJIA 4OZYA 1AIRA 1OGMX 4XMYA 3B4NA 2VJJA 2X3HA 3VMWA 4I84A 4W8TA 1IDKA 1RMGA 1XG2A 1GQ8A 1OOCA 4XLFA 4XN3A 3GQ7A 2QXZA 4OJPA 4W8QA 4YZQA 3UW0A 1WMRA 2O0VA 2X6YA 4PMHA 3ZPPA 3JURA 3EQNA 2O0WA 4XOTA 4YZ0A 2PYHA 4MR0A 2INUA 4OJLA 4XKVA 2NT9A 1O8LA 4W8RA 4NK8A 3GQ8A 4XL9A 3B8YA 2NT6A 5C1EA 2IQ7A 1O88A 4XORA 3B90A 4OJ6A 4XM3A 1O8EA 1O8DA 4XLHA 4XLAA 2X6WA 4W8SA 2X85A 4C2LA 4Z06A 2O17A 3FY3A 2NTQA 4XONA 3LMWA 2QX3A 3WWGA 2INVA 2PECA 4MXNA 1DBGA 1O8JA 1O8IA 1JTAA 5C1CA 1X0CA 2QY1A 2NSPA 1VBLA 1DBOA 2UVEA 3ZSCA 2NTPA 2EWEA 4U4BA 1KCCA 4XR6A 3VMVA 4YZXA 1IB4A 4EW9A 2O04A 4OZZA 3GRHA 1BN8A 4XN0A 1H80A
chains in the Genus database with same CATH superfamily
4XOPA 2F3LA 2XTXA 4NK6A 1O8KA 2NTBA 4Z03A 4U49A 3DU1X 1K4ZA 3KRGA 2BM4A 1KTWA 4YELA 3TH0A 1QCXA 1PLUA 1OFEA 1HF2A 1O8FA 3LJYA 4OM9A 2BSPA 1DABA 1IDJA 4YZAA 1O8MA 2Z8GA 1OGOX 2VFMA 3VSVA 2ODLA 3VSUA 1K5CA 1OFLA 1RU4A 1TYVA 3GQAA 4YEJA 2O1DA 4Z05A 3BH6B 2NSTA 4XQFA 1JRGA 2VBKA 1EE6A 1TYWA 3SY2A 5JLVC 3EQOA 3VSTA 2IOUG 1NHCA 4XLCA 2G0YA 2PYGA 2VBMA 4OJ5A 5AMVA 1HG8A 2VFQA 1QA2A 1O8HA 1OFMA 3GQ9A 2UVFA 3SZEA 1KCDA 3LYCA 1IA5A 1O8GA 2VFPA 2XT2A 3P4GA 3SQVA 4AVZA 4OJOA 3T9GA 4XLEA 3SUCA 1BHEA 1PE9A 2O6WA 1TYXA 1PXZA 4HWVA 4URRA 1CZFA 2VBEA 4XKWA 1QJVA 2X6XA 2NZMA 4OPWA 4XNFA 1RWRA 2VJIA 4YC5A 4OZYA 1AIRA 1K8FA 1LLWA 1OGMX 2XT4A 4XMYA 3B4NA 3NAWA 1QRCA 2VJJA 2X3HA 4YCQA 3VMWA 2XC1A 2B0RA 4I84A 4W8TA 1KQ5A 1OFDA 1IDKA 2BM7A 3PETA 1RMGA 2VFOA 1TSPA 1TYUA 1XG2A 1GQ8A 3AK5A 1OOCA 4JRAC 1QA1A 4XLFA 4XN3A 3GQ7A 2QXZA 4OJPA 4W8QA 1QRBA 4YZQA 1WMRA 2O0VA 2X6YA 4PMHA 3UW0A 2XTWA 3JURA 3ZPPA 3EQNA 2O0WA 4XOTA 4YZ0A 3N90A 5JMCB 2PYHA 4MR0A 1QA3A 2INUA 4YDTA 4OJLA 3ML3A 4XKVA 2NT9A 3BH7B 1O8LA 1EZGA 2J8KA 3NB2A 4W8RA 4NK8A 3GQ8A 4XL9A 3B8YA 1CLWA 2NT6A 1QQ1A 5C1EA 2XTYA 2IQ7A 2W7ZA 1O88A 4XORA 4KH3A 4YFOA 3B90A 3N6ZA 3H09A 4OJ6A 4XM3A 1O8DA 1O8EA 4XLHA 2V5IA 4XLAA 5DNSA 2X6WA 4W8SA 2X85A 4C2LA 4Z06A 2O17A 3FY3A 2NTQA 3SYJA 2BM6A 1L1IA 4XONA 3LMWA 2QX3A 3WWGA 2INVA 1EA0A 2J8IA 4YEIA 2PECA 3JX8A 2BM5A 4MXNA 1DBGA 1O8JA 2VFNA 1JTAA 1O8IA 5C1CA 1X0CA 2QY1A 2NSPA 1VBLA 1DBOA 3RIQA 3PSZA 2BX6A 2UVEA 3ZSCA 1LM1A 2YUHA 3PSSA 2NTPA 2EWEA 2QZAA 4U4BA 1KCCA 4XR6A 2QYUA 4V02C 4YZXA 3VMVA 1IB4A 1WXRA 1LLZA 2O04A 4EW9A 4OZZA 3GRHA 1BN8A 4XN0A 1H80A
chains in the Genus database with same CATH topology
4XOPA 4NK6A 1O8KA 2NTBA 4Z03A 4U49A 3KRGA 1KTWA 4YELA 1QCXA 1PLUA 1O8FA 2BSPA 1IDJA 4YZAA 1O8MA 2Z8GA 1OGOX 3VSVA 2ODLA 3VSUA 1K5CA 1OFLA 1RU4A 3GQAA 4YEJA 2O1DA 4Z05A 4XQFA 2NSTA 1JRGA 2VBKA 1EE6A 3EQOA 3VSTA 1NHCA 4XLCA 2PYGA 2VBMA 4OJ5A 5AMVA 1HG8A 1O8HA 1OFMA 3GQ9A 2UVFA 1KCDA 1IA5A 1O8GA 4AVZA 4OJOA 3T9GA 4XLEA 3SUCA 1BHEA 1PE9A 1PXZA 4HWVA 4URRA 2VBEA 1CZFA 4XKWA 1QJVA 2X6XA 2NZMA 4XNFA 1RWRA 2VJIA 4OZYA 1AIRA 1OGMX 4XMYA 3B4NA 2VJJA 2X3HA 3VMWA 4I84A 4W8TA 1IDKA 1RMGA 1XG2A 1GQ8A 1OOCA 4XLFA 4XN3A 3GQ7A 2QXZA 4OJPA 4W8QA 4YZQA 3UW0A 1WMRA 2O0VA 2X6YA 4PMHA 3ZPPA 3JURA 3EQNA 2O0WA 4XOTA 4YZ0A 2PYHA 4MR0A 2INUA 4OJLA 4XKVA 2NT9A 1O8LA 4W8RA 4NK8A 3GQ8A 4XL9A 3B8YA 2NT6A 5C1EA 2IQ7A 1O88A 4XORA 3B90A 4OJ6A 4XM3A 1O8EA 1O8DA 4XLHA 4XLAA 2X6WA 4W8SA 2X85A 4C2LA 4Z06A 2O17A 3FY3A 2NTQA 4XONA 3LMWA 2QX3A 3WWGA 2INVA 2PECA 4MXNA 1DBGA 1O8JA 1O8IA 1JTAA 5C1CA 1X0CA 2QY1A 2NSPA 1VBLA 1DBOA 2UVEA 3ZSCA 2NTPA 2EWEA 4U4BA 1KCCA 4XR6A 3VMVA 4YZXA 1IB4A 4EW9A 2O04A 4OZZA 3GRHA 1BN8A 4XN0A 1H80A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XOP A;  4NK6 A;  1O8K A;  2NTB A;  4Z03 A;  4U49 A;  3KRG A;  1KTW A;  4YEL A;  1QCX A;  1PLU A;  1O8F A;  2BSP A;  1IDJ A;  4YZA A;  1O8M A;  2Z8G A;  1OGO X;  3VSV A;  2ODL A;  3VSU A;  1K5C A;  1OFL A;  1RU4 A;  3GQA A;  4YEJ A;  2O1D A;  4Z05 A;  4XQF A;  2NST A;  1JRG A;  2VBK A;  1EE6 A;  3EQO A;  3VST A;  1NHC A;  4XLC A;  2PYG A;  2VBM A;  4OJ5 A;  5AMV A;  1HG8 A;  1O8H A;  1OFM A;  3GQ9 A;  2UVF A;  1KCD A;  1IA5 A;  1O8G A;  4AVZ A;  4OJO A;  3T9G A;  4XLE A;  3SUC A;  1BHE A;  1PE9 A;  1PXZ A;  4HWV A;  4URR A;  2VBE A;  1CZF A;  4XKW A;  1QJV A;  2X6X A;  2NZM A;  4XNF A;  1RWR A;  2VJI A;  4OZY A;  1AIR A;  1OGM X;  4XMY A;  3B4N A;  2VJJ A;  2X3H A;  3VMW A;  4I84 A;  4W8T A;  1IDK A;  1RMG A;  1XG2 A;  1GQ8 A;  1OOC A;  4XLF A;  4XN3 A;  3GQ7 A;  2QXZ A;  4OJP A;  4W8Q A;  4YZQ A;  3UW0 A;  1WMR A;  2O0V A;  2X6Y A;  4PMH A;  3ZPP A;  3JUR A;  3EQN A;  2O0W A;  4XOT A;  4YZ0 A;  2PYH A;  4MR0 A;  2INU A;  4OJL A;  4XKV A;  2NT9 A;  1O8L A;  4W8R A;  4NK8 A;  3GQ8 A;  4XL9 A;  3B8Y A;  2NT6 A;  5C1E A;  2IQ7 A;  1O88 A;  4XOR A;  3B90 A;  4OJ6 A;  4XM3 A;  1O8E A;  1O8D A;  4XLH A;  4XLA A;  2X6W A;  4W8S A;  2X85 A;  4C2L A;  4Z06 A;  2O17 A;  3FY3 A;  2NTQ A;  4XON A;  3LMW A;  2QX3 A;  3WWG A;  2INV A;  2PEC A;  4MXN A;  1DBG A;  1O8J A;  1O8I A;  1JTA A;  5C1C A;  1X0C A;  2QY1 A;  2NSP A;  1VBL A;  1DBO A;  2UVE A;  3ZSC A;  2NTP A;  2EWE A;  4U4B A;  1KCC A;  4XR6 A;  3VMV A;  4YZX A;  1IB4 A;  4EW9 A;  2O04 A;  4OZZ A;  3GRH A;  1BN8 A;  4XN0 A;  1H80 A; 
#chains in the Genus database with same CATH topology
 4XOP A;  2F3L A;  2XTX A;  4NK6 A;  1O8K A;  2NTB A;  4Z03 A;  4U49 A;  3DU1 X;  1K4Z A;  3KRG A;  2BM4 A;  1KTW A;  4YEL A;  3TH0 A;  1QCX A;  1PLU A;  1OFE A;  1HF2 A;  1O8F A;  3LJY A;  4OM9 A;  2BSP A;  1DAB A;  1IDJ A;  4YZA A;  1O8M A;  2Z8G A;  1OGO X;  2VFM A;  3VSV A;  2ODL A;  3VSU A;  1K5C A;  1OFL A;  1RU4 A;  1TYV A;  3GQA A;  4YEJ A;  2O1D A;  4Z05 A;  3BH6 B;  2NST A;  4XQF A;  1JRG A;  2VBK A;  1EE6 A;  1TYW A;  3SY2 A;  5JLV C;  3EQO A;  3VST A;  2IOU G;  1NHC A;  4XLC A;  2G0Y A;  2PYG A;  2VBM A;  4OJ5 A;  5AMV A;  1HG8 A;  2VFQ A;  1QA2 A;  1O8H A;  1OFM A;  3GQ9 A;  2UVF A;  3SZE A;  1KCD A;  3LYC A;  1IA5 A;  1O8G A;  2VFP A;  2XT2 A;  3P4G A;  3SQV A;  4AVZ A;  4OJO A;  3T9G A;  4XLE A;  3SUC A;  1BHE A;  1PE9 A;  2O6W A;  1TYX A;  1PXZ A;  4HWV A;  4URR A;  1CZF A;  2VBE A;  4XKW A;  1QJV A;  2X6X A;  2NZM A;  4OPW A;  4XNF A;  1RWR A;  2VJI A;  4YC5 A;  4OZY A;  1AIR A;  1K8F A;  1LLW A;  1OGM X;  2XT4 A;  4XMY A;  3B4N A;  3NAW A;  1QRC A;  2VJJ A;  2X3H A;  4YCQ A;  3VMW A;  2XC1 A;  2B0R A;  4I84 A;  4W8T A;  1KQ5 A;  1OFD A;  1IDK A;  2BM7 A;  3PET A;  1RMG A;  2VFO A;  1TSP A;  1TYU A;  1XG2 A;  1GQ8 A;  3AK5 A;  1OOC A;  4JRA C;  1QA1 A;  4XLF A;  4XN3 A;  3GQ7 A;  2QXZ A;  4OJP A;  4W8Q A;  1QRB A;  4YZQ A;  1WMR A;  2O0V A;  2X6Y A;  4PMH A;  3UW0 A;  2XTW A;  3JUR A;  3ZPP A;  3EQN A;  2O0W A;  4XOT A;  4YZ0 A;  3N90 A;  5JMC B;  2PYH A;  4MR0 A;  1QA3 A;  2INU A;  4YDT A;  4OJL A;  3ML3 A;  4XKV A;  2NT9 A;  3BH7 B;  1O8L A;  1EZG A;  2J8K A;  3NB2 A;  4W8R A;  4NK8 A;  3GQ8 A;  4XL9 A;  3B8Y A;  1CLW A;  2NT6 A;  1QQ1 A;  5C1E A;  2XTY A;  2IQ7 A;  2W7Z A;  1O88 A;  4XOR A;  4KH3 A;  4YFO A;  3B90 A;  3N6Z A;  3H09 A;  4OJ6 A;  4XM3 A;  1O8D A;  1O8E A;  4XLH A;  2V5I A;  4XLA A;  5DNS A;  2X6W A;  4W8S A;  2X85 A;  4C2L A;  4Z06 A;  2O17 A;  3FY3 A;  2NTQ A;  3SYJ A;  2BM6 A;  1L1I A;  4XON A;  3LMW A;  2QX3 A;  3WWG A;  2INV A;  1EA0 A;  2J8I A;  4YEI A;  2PEC A;  3JX8 A;  2BM5 A;  4MXN A;  1DBG A;  1O8J A;  2VFN A;  1JTA A;  1O8I A;  5C1C A;  1X0C A;  2QY1 A;  2NSP A;  1VBL A;  1DBO A;  3RIQ A;  3PSZ A;  2BX6 A;  2UVE A;  3ZSC A;  1LM1 A;  2YUH A;  3PSS A;  2NTP A;  2EWE A;  2QZA A;  4U4B A;  1KCC A;  4XR6 A;  2QYU A;  4V02 C;  4YZX A;  3VMV A;  1IB4 A;  1WXR A;  1LLZ A;  2O04 A;  4EW9 A;  4OZZ A;  3GRH A;  1BN8 A;  4XN0 A;  1H80 A; 
#chains in the Genus database with same CATH homology
 4XOP A;  4NK6 A;  1O8K A;  2NTB A;  4Z03 A;  4U49 A;  3KRG A;  1KTW A;  4YEL A;  1QCX A;  1PLU A;  1O8F A;  2BSP A;  1IDJ A;  4YZA A;  1O8M A;  2Z8G A;  1OGO X;  3VSV A;  2ODL A;  3VSU A;  1K5C A;  1OFL A;  1RU4 A;  3GQA A;  4YEJ A;  2O1D A;  4Z05 A;  4XQF A;  2NST A;  1JRG A;  2VBK A;  1EE6 A;  3EQO A;  3VST A;  1NHC A;  4XLC A;  2PYG A;  2VBM A;  4OJ5 A;  5AMV A;  1HG8 A;  1O8H A;  1OFM A;  3GQ9 A;  2UVF A;  1KCD A;  1IA5 A;  1O8G A;  4AVZ A;  4OJO A;  3T9G A;  4XLE A;  3SUC A;  1BHE A;  1PE9 A;  1PXZ A;  4HWV A;  4URR A;  2VBE A;  1CZF A;  4XKW A;  1QJV A;  2X6X A;  2NZM A;  4XNF A;  1RWR A;  2VJI A;  4OZY A;  1AIR A;  1OGM X;  4XMY A;  3B4N A;  2VJJ A;  2X3H A;  3VMW A;  4I84 A;  4W8T A;  1IDK A;  1RMG A;  1XG2 A;  1GQ8 A;  1OOC A;  4XLF A;  4XN3 A;  3GQ7 A;  2QXZ A;  4OJP A;  4W8Q A;  4YZQ A;  3UW0 A;  1WMR A;  2O0V A;  2X6Y A;  4PMH A;  3ZPP A;  3JUR A;  3EQN A;  2O0W A;  4XOT A;  4YZ0 A;  2PYH A;  4MR0 A;  2INU A;  4OJL A;  4XKV A;  2NT9 A;  1O8L A;  4W8R A;  4NK8 A;  3GQ8 A;  4XL9 A;  3B8Y A;  2NT6 A;  5C1E A;  2IQ7 A;  1O88 A;  4XOR A;  3B90 A;  4OJ6 A;  4XM3 A;  1O8E A;  1O8D A;  4XLH A;  4XLA A;  2X6W A;  4W8S A;  2X85 A;  4C2L A;  4Z06 A;  2O17 A;  3FY3 A;  2NTQ A;  4XON A;  3LMW A;  2QX3 A;  3WWG A;  2INV A;  2PEC A;  4MXN A;  1DBG A;  1O8J A;  1O8I A;  1JTA A;  5C1C A;  1X0C A;  2QY1 A;  2NSP A;  1VBL A;  1DBO A;  2UVE A;  3ZSC A;  2NTP A;  2EWE A;  4U4B A;  1KCC A;  4XR6 A;  3VMV A;  4YZX A;  1IB4 A;  4EW9 A;  2O04 A;  4OZZ A;  3GRH A;  1BN8 A;  4XN0 A;  1H80 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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