1Q09A

Crystal structure of the zn(ii) form of e. coli zntr, a zinc-sensing transcriptional regulator (space group i4122)
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
90
structure length
90
Chain Sequence
DLQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSVYCSILEALEQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Zn(II)-responsive regulator of zntA
publication title Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR
pubmed doi rcsb
source organism Escherichia coli
total genus 34
structure length 90
sequence length 90
ec nomenclature
pdb deposition date 2003-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09278 MerR-DNA-bind MerR, DNA binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.10 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 1q09A00
3Q5RA 2ZHGA 3Q5SA 1Q06A 1Q07A 3UCSA 3HH0A 4WLWA 5I41B 1EXJA 1R8DA 1R8EA 3QAOA 1Q09A 5D90A 3GPVA 5E01A 1Q08A 1JBGA 5I44A 2VZ4A 2JMLA 1Q0AA 3Q3DA 4R24B 4R22B 4WLSA 1Q05A 3Q2YA 4R4EA 2DG6A 3D71A 5D8CA 4J2NA 3GP4A 3D6ZA 3Q1MA 3D6YA 3Q5PA 3IAOA 3D70A 1EXIA 2ZHHA
chains in the Genus database with same CATH superfamily
2KVVA 3Q5RA 1PM6A 2ZHGA 2OG0A 3Q5SA 1Q06A 1Q07A 2IEFA 3UCSA 1RH6A 3EZFA 3HH0A 4WLWA 4DCZA 5I41B 1EXJA 1R8DA 1R8EA 3QAOA 1Q09A 5D90A 3GPVA 5E01A 1Q08A 1JBGA 5I44A 2VZ4A 1LX8A 2JMLA 1Q0AA 3Q3DA 4R24B 4R22B 4WLSA 1Q05A 1Y6UA 4LHFA 3Q2YA 4R4EA 2DG6A 3D71A 5D8CA 4J2NA 3GP4A 3EZ9A 3D6ZA 3Q1MA 3D6YA 3EZ2A 3Q5PA 3EZ7A 3IAOA 3D70A 1EXIA 3EZ6A 2ZHHA
chains in the Genus database with same CATH topology
2KVVA 3Q5RA 1PM6A 2ZHGA 2OG0A 3Q5SA 1Q06A 1Q07A 2IEFA 3UCSA 1RH6A 3EZFA 3HH0A 4WLWA 4DCZA 5I41B 1EXJA 1R8DA 1R8EA 3QAOA 1Q09A 5D90A 3GPVA 5E01A 1Q08A 1JBGA 5I44A 2VZ4A 1LX8A 2JMLA 1Q0AA 3Q3DA 4R24B 4R22B 4WLSA 1Q05A 1Y6UA 4LHFA 3Q2YA 4R4EA 2DG6A 3D71A 5D8CA 4J2NA 3GP4A 3EZ9A 3D6ZA 3Q1MA 3D6YA 3EZ2A 3Q5PA 3EZ7A 3IAOA 3D70A 1EXIA 3EZ6A 2ZHHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3Q5R A;  2ZHG A;  3Q5S A;  1Q06 A;  1Q07 A;  3UCS A;  3HH0 A;  4WLW A;  5I41 B;  1EXJ A;  1R8D A;  1R8E A;  3QAO A;  1Q09 A;  5D90 A;  3GPV A;  5E01 A;  1Q08 A;  1JBG A;  5I44 A;  2VZ4 A;  2JML A;  1Q0A A;  3Q3D A;  4R24 B;  4R22 B;  4WLS A;  1Q05 A;  3Q2Y A;  4R4E A;  2DG6 A;  3D71 A;  5D8C A;  4J2N A;  3GP4 A;  3D6Z A;  3Q1M A;  3D6Y A;  3Q5P A;  3IAO A;  3D70 A;  1EXI A;  2ZHH A; 
#chains in the Genus database with same CATH topology
 2KVV A;  3Q5R A;  1PM6 A;  2ZHG A;  2OG0 A;  3Q5S A;  1Q06 A;  1Q07 A;  2IEF A;  3UCS A;  1RH6 A;  3EZF A;  3HH0 A;  4WLW A;  4DCZ A;  5I41 B;  1EXJ A;  1R8D A;  1R8E A;  3QAO A;  1Q09 A;  5D90 A;  3GPV A;  5E01 A;  1Q08 A;  1JBG A;  5I44 A;  2VZ4 A;  1LX8 A;  2JML A;  1Q0A A;  3Q3D A;  4R24 B;  4R22 B;  4WLS A;  1Q05 A;  1Y6U A;  4LHF A;  3Q2Y A;  4R4E A;  2DG6 A;  3D71 A;  5D8C A;  4J2N A;  3GP4 A;  3EZ9 A;  3D6Z A;  3Q1M A;  3D6Y A;  3EZ2 A;  3Q5P A;  3EZ7 A;  3IAO A;  3D70 A;  1EXI A;  3EZ6 A;  2ZHH A; 
#chains in the Genus database with same CATH homology
 2KVV A;  3Q5R A;  1PM6 A;  2ZHG A;  2OG0 A;  3Q5S A;  1Q06 A;  1Q07 A;  2IEF A;  3UCS A;  1RH6 A;  3EZF A;  3HH0 A;  4WLW A;  4DCZ A;  5I41 B;  1EXJ A;  1R8D A;  1R8E A;  3QAO A;  1Q09 A;  5D90 A;  3GPV A;  5E01 A;  1Q08 A;  1JBG A;  5I44 A;  2VZ4 A;  1LX8 A;  2JML A;  1Q0A A;  3Q3D A;  4R24 B;  4R22 B;  4WLS A;  1Q05 A;  1Y6U A;  4LHF A;  3Q2Y A;  4R4E A;  2DG6 A;  3D71 A;  5D8C A;  4J2N A;  3GP4 A;  3EZ9 A;  3D6Z A;  3Q1M A;  3D6Y A;  3EZ2 A;  3Q5P A;  3EZ7 A;  3IAO A;  3D70 A;  1EXI A;  3EZ6 A;  2ZHH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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