1Q3YA

Nmr structure of the cys28his mutant (d form) of the nucleocapsid protein ncp7 of hiv-1.
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
41
structure length
41
Chain Sequence
VKCFNCGKEGHTARNHRAPRKKGCWKCGKEGHQMKDCTERQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords GAG protein
publication title Target specificity of human immunodeficiency virus type 1 NCp7 requires an intact conformation of its CCHC N-terminal zinc finger.
pubmed doi rcsb
total genus 5
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 2003-08-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.60.10 Few Secondary Structures Irregular HIV-1 Nucleocapsid Protein Zinc finger, CCHC-type 1q3yA00
1WWEA 1AAFA 3TS2A 2EXFA 2M3ZA 1WWGA 1BJ6A 1Q3ZA 2IHXA 1Q3YA 1A1TA 2CQFA 2JZWA 2L4LA 3TRZA 1MFSA 1U6PA 2EC7A 2YSAA 3TS0A 3NYBB 1ESKA 1F6UA 1A6BB 2LI8A 1WWFA 1WWDA
chains in the Genus database with same CATH superfamily
1WWEA 1AAFA 3TS2A 2EXFA 2M3ZA 1WWGA 1BJ6A 1Q3ZA 2IHXA 1Q3YA 1A1TA 2CQFA 2JZWA 2L4LA 3TRZA 1MFSA 1U6PA 2EC7A 2YSAA 3TS0A 3NYBB 1ESKA 1F6UA 1A6BB 2LI8A 1WWFA 1WWDA
chains in the Genus database with same CATH topology
1WWEA 1AAFA 3TS2A 2EXFA 2M3ZA 1WWGA 1BJ6A 1Q3ZA 2IHXA 1Q3YA 1A1TA 2CQFA 2JZWA 2L4LA 3TRZA 1MFSA 1U6PA 2EC7A 2YSAA 3TS0A 3NYBB 1ESKA 1F6UA 1A6BB 2LI8A 1WWFA 1WWDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WWE A;  1AAF A;  3TS2 A;  2EXF A;  2M3Z A;  1WWG A;  1BJ6 A;  1Q3Z A;  2IHX A;  1Q3Y A;  1A1T A;  2CQF A;  2JZW A;  2L4L A;  3TRZ A;  1MFS A;  1U6P A;  2EC7 A;  2YSA A;  3TS0 A;  3NYB B;  1ESK A;  1F6U A;  1A6B B;  2LI8 A;  1WWF A;  1WWD A; 
#chains in the Genus database with same CATH topology
 1WWE A;  1AAF A;  3TS2 A;  2EXF A;  2M3Z A;  1WWG A;  1BJ6 A;  1Q3Z A;  2IHX A;  1Q3Y A;  1A1T A;  2CQF A;  2JZW A;  2L4L A;  3TRZ A;  1MFS A;  1U6P A;  2EC7 A;  2YSA A;  3TS0 A;  3NYB B;  1ESK A;  1F6U A;  1A6B B;  2LI8 A;  1WWF A;  1WWD A; 
#chains in the Genus database with same CATH homology
 1WWE A;  1AAF A;  3TS2 A;  2EXF A;  2M3Z A;  1WWG A;  1BJ6 A;  1Q3Z A;  2IHX A;  1Q3Y A;  1A1T A;  2CQF A;  2JZW A;  2L4L A;  3TRZ A;  1MFS A;  1U6P A;  2EC7 A;  2YSA A;  3TS0 A;  3NYB B;  1ESK A;  1F6U A;  1A6B B;  2LI8 A;  1WWF A;  1WWD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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