1Q7YL

Crystal structure of ccdap-puromycin bound at the peptidyl transferase center of the 50s ribosomal subunit
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
132
structure length
132
Chain Sequence
MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural Insights Into Peptide Bond Formation
pubmed doi rcsb
total genus 27
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2003-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 1q7yL00
1VQ8K 4WFAH 1Q82L 4IOAH 3CD6K 3G71K 3CF5H 1W2BJ 3CMEK 5GAHL 1VQ4K 3CMAK 1KD1L 3PIPH 3PIOH 1N8RL 1WHIA 1YIJK 1VQLK 5H1SM 5GADL 1VQ7K 3CXCJ 4WF9H 3G4SK 2QA4K 3CC2K 3CCSK 2ZJRH 1JJ2J 1S72K 1Q86L 5GAGL 2ZJPH 3CCUK 1QVFJ 3CC4K 1YJWK 4IOCH 4V19O 3CCJK 2OTJK 1YHQK 3CCEK 3J7ZK 1VQKK 1NJIL 1VQNK 2QEXK 4U67H 5JVHH 3I56K 2OTLK 3CCMK 3CCLK 3CCRK 3DLLH 4UY8K 5GAEL 1YJNK 1QVGJ 1VQ9K 4WFBH 1K73L 1YJ9K 4IO9H 1VQMK 1VQOK 1Q81L 1K8AL 3CCVK 1YITK 3CC7K 3CCQK 5DM6H 4WFNH 5JVGH 2ZJQH 5AN9E 3G6EK 4WCEH 1VQ6K 1Q7YL 5DM7H 3I55K 5HL7H 3OW2J 1K9ML 1M90L 5MLCM 1KC8L 3J7YL 1VQ5K 1M1KL 1KQSJ 1YI2K 1VQPK 3CPWJ
chains in the Genus database with same CATH superfamily
1VQ8K 4WFAH 1Q82L 4IOAH 3CD6K 3G71K 3CF5H 1W2BJ 3CMEK 5GAHL 1VQ4K 3CMAK 1KD1L 3PIPH 3PIOH 1N8RL 1WHIA 1YIJK 1VQLK 5H1SM 5GADL 1VQ7K 3CXCJ 4WF9H 3G4SK 2QA4K 3CC2K 3CCSK 2ZJRH 1JJ2J 1S72K 1Q86L 5GAGL 2ZJPH 3CCUK 1QVFJ 3CC4K 1YJWK 4IOCH 4V19O 3CCJK 2OTJK 1YHQK 3CCEK 3J7ZK 1VQKK 1NJIL 1VQNK 2QEXK 4U67H 5JVHH 3I56K 2OTLK 3CCMK 3CCLK 3CCRK 3DLLH 4UY8K 5GAEL 1YJNK 1QVGJ 1VQ9K 4WFBH 1K73L 1YJ9K 4IO9H 1VQMK 1VQOK 1Q81L 1K8AL 3CCVK 1YITK 3CC7K 3CCQK 5DM6H 4WFNH 5JVGH 2ZJQH 5AN9E 3G6EK 4WCEH 1VQ6K 1Q7YL 5DM7H 3I55K 5HL7H 3OW2J 1K9ML 1M90L 5MLCM 1KC8L 3J7YL 1VQ5K 1M1KL 1KQSJ 1YI2K 1VQPK 3CPWJ
chains in the Genus database with same CATH topology
1VQ8K 4WFAH 1Q82L 4IOAH 3CD6K 3G71K 3CF5H 1W2BJ 3CMEK 5GAHL 1VQ4K 3CMAK 1KD1L 3PIPH 3PIOH 1N8RL 1WHIA 1YIJK 1VQLK 5H1SM 5GADL 1VQ7K 3CXCJ 4WF9H 3G4SK 2QA4K 3CC2K 3CCSK 2ZJRH 1JJ2J 1S72K 1Q86L 5GAGL 2ZJPH 3CCUK 1QVFJ 3CC4K 1YJWK 4IOCH 4V19O 3CCJK 2OTJK 1YHQK 3CCEK 3J7ZK 1VQKK 1NJIL 1VQNK 2QEXK 4U67H 5JVHH 3I56K 2OTLK 3CCMK 3CCLK 3CCRK 3DLLH 4UY8K 5GAEL 1YJNK 1QVGJ 1VQ9K 4WFBH 1K73L 1YJ9K 4IO9H 1VQMK 1VQOK 1Q81L 1K8AL 3CCVK 1YITK 3CC7K 3CCQK 5DM6H 4WFNH 5JVGH 2ZJQH 5AN9E 3G6EK 4WCEH 1VQ6K 1Q7YL 5DM7H 3I55K 5HL7H 3OW2J 1K9ML 1M90L 5MLCM 1KC8L 3J7YL 1VQ5K 1M1KL 1KQSJ 1YI2K 1VQPK 3CPWJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQ8 K;  4WFA H;  1Q82 L;  4IOA H;  3CD6 K;  3G71 K;  3CF5 H;  1W2B J;  3CME K;  5GAH L;  1VQ4 K;  3CMA K;  1KD1 L;  3PIP H;  3PIO H;  1N8R L;  1WHI A;  1YIJ K;  1VQL K;  5H1S M;  5GAD L;  1VQ7 K;  3CXC J;  4WF9 H;  3G4S K;  2QA4 K;  3CC2 K;  3CCS K;  2ZJR H;  1JJ2 J;  1S72 K;  1Q86 L;  5GAG L;  2ZJP H;  3CCU K;  1QVF J;  3CC4 K;  1YJW K;  4IOC H;  4V19 O;  3CCJ K;  2OTJ K;  1YHQ K;  3CCE K;  3J7Z K;  1VQK K;  1NJI L;  1VQN K;  2QEX K;  4U67 H;  5JVH H;  3I56 K;  2OTL K;  3CCM K;  3CCL K;  3CCR K;  3DLL H;  4UY8 K;  5GAE L;  1YJN K;  1QVG J;  1VQ9 K;  4WFB H;  1K73 L;  1YJ9 K;  4IO9 H;  1VQM K;  1VQO K;  1Q81 L;  1K8A L;  3CCV K;  1YIT K;  3CC7 K;  3CCQ K;  5DM6 H;  4WFN H;  5JVG H;  2ZJQ H;  5AN9 E;  3G6E K;  4WCE H;  1VQ6 K;  1Q7Y L;  5DM7 H;  3I55 K;  5HL7 H;  3OW2 J;  1K9M L;  1M90 L;  5MLC M;  1KC8 L;  3J7Y L;  1VQ5 K;  1M1K L;  1KQS J;  1YI2 K;  1VQP K;  3CPW J; 
#chains in the Genus database with same CATH topology
 1VQ8 K;  4WFA H;  1Q82 L;  4IOA H;  3CD6 K;  3G71 K;  3CF5 H;  1W2B J;  3CME K;  5GAH L;  1VQ4 K;  3CMA K;  1KD1 L;  3PIP H;  3PIO H;  1N8R L;  1WHI A;  1YIJ K;  1VQL K;  5H1S M;  5GAD L;  1VQ7 K;  3CXC J;  4WF9 H;  3G4S K;  2QA4 K;  3CC2 K;  3CCS K;  2ZJR H;  1JJ2 J;  1S72 K;  1Q86 L;  5GAG L;  2ZJP H;  3CCU K;  1QVF J;  3CC4 K;  1YJW K;  4IOC H;  4V19 O;  3CCJ K;  2OTJ K;  1YHQ K;  3CCE K;  3J7Z K;  1VQK K;  1NJI L;  1VQN K;  2QEX K;  4U67 H;  5JVH H;  3I56 K;  2OTL K;  3CCM K;  3CCL K;  3CCR K;  3DLL H;  4UY8 K;  5GAE L;  1YJN K;  1QVG J;  1VQ9 K;  4WFB H;  1K73 L;  1YJ9 K;  4IO9 H;  1VQM K;  1VQO K;  1Q81 L;  1K8A L;  3CCV K;  1YIT K;  3CC7 K;  3CCQ K;  5DM6 H;  4WFN H;  5JVG H;  2ZJQ H;  5AN9 E;  3G6E K;  4WCE H;  1VQ6 K;  1Q7Y L;  5DM7 H;  3I55 K;  5HL7 H;  3OW2 J;  1K9M L;  1M90 L;  5MLC M;  1KC8 L;  3J7Y L;  1VQ5 K;  1M1K L;  1KQS J;  1YI2 K;  1VQP K;  3CPW J; 
#chains in the Genus database with same CATH homology
 1VQ8 K;  4WFA H;  1Q82 L;  4IOA H;  3CD6 K;  3G71 K;  3CF5 H;  1W2B J;  3CME K;  5GAH L;  1VQ4 K;  3CMA K;  1KD1 L;  3PIP H;  3PIO H;  1N8R L;  1WHI A;  1YIJ K;  1VQL K;  5H1S M;  5GAD L;  1VQ7 K;  3CXC J;  4WF9 H;  3G4S K;  2QA4 K;  3CC2 K;  3CCS K;  2ZJR H;  1JJ2 J;  1S72 K;  1Q86 L;  5GAG L;  2ZJP H;  3CCU K;  1QVF J;  3CC4 K;  1YJW K;  4IOC H;  4V19 O;  3CCJ K;  2OTJ K;  1YHQ K;  3CCE K;  3J7Z K;  1VQK K;  1NJI L;  1VQN K;  2QEX K;  4U67 H;  5JVH H;  3I56 K;  2OTL K;  3CCM K;  3CCL K;  3CCR K;  3DLL H;  4UY8 K;  5GAE L;  1YJN K;  1QVG J;  1VQ9 K;  4WFB H;  1K73 L;  1YJ9 K;  4IO9 H;  1VQM K;  1VQO K;  1Q81 L;  1K8A L;  3CCV K;  1YIT K;  3CC7 K;  3CCQ K;  5DM6 H;  4WFN H;  5JVG H;  2ZJQ H;  5AN9 E;  3G6E K;  4WCE H;  1VQ6 K;  1Q7Y L;  5DM7 H;  3I55 K;  5HL7 H;  3OW2 J;  1K9M L;  1M90 L;  5MLC M;  1KC8 L;  3J7Y L;  1VQ5 K;  1M1K L;  1KQS J;  1YI2 K;  1VQP K;  3CPW J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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