1Q7YV

Crystal structure of ccdap-puromycin bound at the peptidyl transferase center of the 50s ribosomal subunit
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural Insights Into Peptide Bond Formation
pubmed doi rcsb
total genus 12
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2003-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF01246 Ribosomal_L24e Ribosomal protein L24e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 1q7yV00
3CCVU 3CMEU 1JJ2T 3CCUU 3CXCT 1M90V 3G4SU 1M1KV 3CC2U 1Q86V 3CCJU 1VQ5U 2OTJU 2QA4U 3G71U 1YIJU 1N8RV 1K8AV 3CCMU 3CMAU 3I55U 1S72U 1VQ4U 1KC8V 1K73V 3CPWT 3CCLU 1VQ8U 3G6EU 1YJNU 1NJIV 3CCRU 1YHQU 1KQST 1VQOU 1Q81V 3CD6U 3CC4U 2OTLU 3CCQU 1QVFT 3OW2T 1VQ9U 1YI2U 1VQMU 1Q82V 1VQLU 3I56U 1KD1V 1YJ9U 1VQKU 1VQNU 1VQ6U 1QVGT 1YJWU 3CC7U 1K9MV 5AN9G 1VQ7U 3CCEU 1VQPU 1YITU 2QEXU 1W2BT 1Q7YV 3CCSU
chains in the Genus database with same CATH superfamily
3CXCT 1M1KV 3G71U 1K8AV 1KC8V 2QEZA 1YJNU 3ANYA 1KQST 1VQMU 3ABRA 1K9MV 4UY8X 1VQPU 1YITU 3CD6U 3AO0A 3CCVU 5H1SY 1JJ2T 3CCUU 3G4SU 3CC2U 3ABQA 2OTJU 1YIJU 1N8RV 3CCMU 1K73V 3CPWT 1VQ8U 3CCRU 1YHQU 3OW2T 1YI2U 2JZ6A 1VQ6U 1JJDA 1QVGT 1YJWU 5AN9G 3CCEU 1VQ9U 3CCSU 3ABOA 1M90V 3CCJU 3CMAU 3I55U 1VQ4U 3CCLU 3ABSA 3G6EU 1NJIV 1Q81V 3CCQU 1QVFT 5DM6U 1Q82V 1VQLU 1KD1V 1VQKU 5MLCY 1VQ7U 2QEXU 3CMEU 1Q86V 1VQ5U 2QA4U 1S72U 3J7ZX 1VQOU 3CC4U 2OTLU 3I56U 1YJ9U 1VQNU 3CC7U 1W2BT 1Q7YV
chains in the Genus database with same CATH topology
3CCVU 3CMEU 1JJ2T 3CCUU 3CXCT 1M90V 3G4SU 1M1KV 3CC2U 1Q86V 3CCJU 1VQ5U 2OTJU 2QA4U 3G71U 1YIJU 1N8RV 1K8AV 3CCMU 3CMAU 3I55U 1S72U 1VQ4U 1KC8V 1K73V 3CPWT 3CCLU 1VQ8U 3G6EU 1YJNU 1NJIV 3CCRU 1YHQU 1KQST 1VQOU 1Q81V 3CD6U 3CC4U 2OTLU 3CCQU 1QVFT 3OW2T 1VQ9U 1YI2U 1VQMU 1Q82V 1VQLU 3I56U 1KD1V 1YJ9U 1VQKU 1VQNU 1VQ6U 1JJDA 1QVGT 1YJWU 3CC7U 1K9MV 5AN9G 1VQ7U 3CCEU 1VQPU 1YITU 2QEXU 1W2BT 1Q7YV 3CCSU
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCV U;  3CME U;  1JJ2 T;  3CCU U;  3CXC T;  1M90 V;  3G4S U;  1M1K V;  3CC2 U;  1Q86 V;  3CCJ U;  1VQ5 U;  2OTJ U;  2QA4 U;  3G71 U;  1YIJ U;  1N8R V;  1K8A V;  3CCM U;  3CMA U;  3I55 U;  1S72 U;  1VQ4 U;  1KC8 V;  1K73 V;  3CPW T;  3CCL U;  1VQ8 U;  3G6E U;  1YJN U;  1NJI V;  3CCR U;  1YHQ U;  1KQS T;  1VQO U;  1Q81 V;  3CD6 U;  3CC4 U;  2OTL U;  3CCQ U;  1QVF T;  3OW2 T;  1VQ9 U;  1YI2 U;  1VQM U;  1Q82 V;  1VQL U;  3I56 U;  1KD1 V;  1YJ9 U;  1VQK U;  1VQN U;  1VQ6 U;  1QVG T;  1YJW U;  3CC7 U;  1K9M V;  5AN9 G;  1VQ7 U;  3CCE U;  1VQP U;  1YIT U;  2QEX U;  1W2B T;  1Q7Y V;  3CCS U; 
#chains in the Genus database with same CATH topology
 3CXC T;  1M1K V;  3G71 U;  1K8A V;  1KC8 V;  2QEZ A;  1YJN U;  3ANY A;  1KQS T;  1VQM U;  3ABR A;  1K9M V;  4UY8 X;  1VQP U;  1YIT U;  3CD6 U;  3AO0 A;  3CCV U;  5H1S Y;  1JJ2 T;  3CCU U;  3G4S U;  3CC2 U;  3ABQ A;  2OTJ U;  1YIJ U;  1N8R V;  3CCM U;  1K73 V;  3CPW T;  1VQ8 U;  3CCR U;  1YHQ U;  3OW2 T;  1YI2 U;  2JZ6 A;  1VQ6 U;  1JJD A;  1QVG T;  1YJW U;  5AN9 G;  3CCE U;  1VQ9 U;  3CCS U;  3ABO A;  1M90 V;  3CCJ U;  3CMA U;  3I55 U;  1VQ4 U;  3CCL U;  3ABS A;  3G6E U;  1NJI V;  1Q81 V;  3CCQ U;  1QVF T;  5DM6 U;  1Q82 V;  1VQL U;  1KD1 V;  1VQK U;  5MLC Y;  1VQ7 U;  2QEX U;  3CME U;  1Q86 V;  1VQ5 U;  2QA4 U;  1S72 U;  3J7Z X;  1VQO U;  3CC4 U;  2OTL U;  3I56 U;  1YJ9 U;  1VQN U;  3CC7 U;  1W2B T;  1Q7Y V; 
#chains in the Genus database with same CATH homology
 3CCV U;  3CME U;  1JJ2 T;  3CCU U;  3CXC T;  1M90 V;  3G4S U;  1M1K V;  3CC2 U;  1Q86 V;  3CCJ U;  1VQ5 U;  2OTJ U;  2QA4 U;  3G71 U;  1YIJ U;  1N8R V;  1K8A V;  3CCM U;  3CMA U;  3I55 U;  1S72 U;  1VQ4 U;  1KC8 V;  1K73 V;  3CPW T;  3CCL U;  1VQ8 U;  3G6E U;  1YJN U;  1NJI V;  3CCR U;  1YHQ U;  1KQS T;  1VQO U;  1Q81 V;  3CD6 U;  3CC4 U;  2OTL U;  3CCQ U;  1QVF T;  3OW2 T;  1VQ9 U;  1YI2 U;  1VQM U;  1Q82 V;  1VQL U;  3I56 U;  1KD1 V;  1YJ9 U;  1VQK U;  1VQN U;  1VQ6 U;  1JJD A;  1QVG T;  1YJW U;  3CC7 U;  1K9M V;  5AN9 G;  1VQ7 U;  3CCE U;  1VQP U;  1YIT U;  2QEX U;  1W2B T;  1Q7Y V;  3CCS U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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