1Q86J

Crystal structure of cca-phe-cap-biotin bound simultaneously at half occupancy to both the a-site and p-site of the the 50s ribosomal subunit.
Total Genus 24
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
167
structure length
156
Chain Sequence
KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKDGMRAPFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAGNA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural insights into peptide bond formation.
pubmed doi rcsb
total genus 24
structure length 156
sequence length 167
ec nomenclature
pdb deposition date 2003-08-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1q86J00
1WKIA 1M90J 3OW2H 1Q82J 3CCLH 3CF5J 3G6EH 3CCQH 3G71H 1N8RJ 1QVFH 5JVGJ 3G4SH 3CCUH 1Q7YJ 3CCVH 1JJ2H 3CPWH 1KC8J 1Y69K 1VQ8H 1VQ4H 3J7ZM 3CCSH 1VQ5H 3CMEH 2OTLH 3CCEH 1YIJH 5GAHN 5GADN 1K9MJ 1VQPH 1K73J 1VQMH 1YJ9H 1YI2H 1S72H 3CC7H 1VQ7H 4WCEJ 1M1KJ 1VQKH 1KQSH 5DM7J 1YJNH 3CMAH 1VQ6H 1VQOH 4IOAJ 3CCMH 1Q86J 4WFAJ 3CC4H 3CCRH 2OTJH 3PIOJ 5HL7J 2ZJRJ 5GAGN 4IOCJ 3DLLJ 3CCJH 4WFNJ 5JVHJ 3CXCH 2PA2A 1NJIJ 4WF9J 2ZJQJ 2QEXH 1W2BH 1KD1J 1YITH 1YJWH 3I56H 5H1SO 5AN9F 2QA4H 3PIPJ 3CD6H 1VQLH 1YHQH 4IO9J 5MLCO 1VQNH 5GAEN 5DM6J 2ZJPJ 1QVGH 1K8AJ 1Q81J 3CC2H 4U67J 4UY8M 1VQ9H 4WFBJ 3I55H
chains in the Genus database with same CATH superfamily
1WKIA 1N5XA 1QAPA 4KWWA 2W55B 1M90J 3OW2H 3B9JC 1Q82J 4GA4A 1UOUA 3CCLH 3CF5J 5EP8A 3C2OA 3G6EH 2W3SB 3CCQH 2J0FA 3VMMA 3G71H 3L4PA 5HULA 3NS1C 1N8RJ 4X46A 1QVFH 1FFUB 5JVGJ 3ETRC 1NVJA 2JBMA 2OMDA 3G4SH 3NVWC 3CCUH 1Q7YJ 3FAHA 2B7NA 3CCVH 5HUOA 1FIQC 4US8A 2B7PA 3AM9A 1ZXIB 1JJ2H 3CPWH 3NVYC 3RPFA 4EAFA 4KWVA 1Y69K 1KC8J 1O4UA 2WK6A 1SIJA 1VQ8H 1VQ4H 3J7ZM 3I55H 1WYGA 3CCSH 1VQ5H 3CMEH 1YTEA 4YYYA 3NRZC 1N62B 3EUB4 4YEKA 3BIIE 2OTLH 1VLBA 3WO1A 1QPOA 3CCEH 1YIJH 1FM0E 2B7QA 5AYZA 3TQVA 3C2RA 5GAHN 2I14A 4XR5A 5GADN 2W54B 5EY3A 1FMAE 3AN1A 1VQPH 1K9MJ 3FC4A 5AYYA 1K73J 1VQMH 3PAJA 1YJ9H 4C7YA 1YI2H 1S72H 3CC7H 1VQ7H 4WCEJ 1N60B 4GA6A 1N63B 1M1KJ 1VQKH 1KQSH 1BRWA 4C7ZA 5DM7J 1YJNH 3CMAH 1VQ6H 1QPRA 1JRPB 3C2EA 1VQOH 1RM6A 2E3TA 4IOAJ 3CCMH 4ZOHA 1Q86J 4WFAJ 4US9A 1JROB 3CC4H 3CCRH 2OTJH 3PIOJ 3SR6C 3WO0A 5HL7J 2ZJRJ 5GAGN 2I1OA 1SB3A 4IOCJ 3DLLJ 3CCJH 5AYXA 2Q5WE 1NVIE 1AZYA 4WFNJ 3GNNA 5JVHJ 2QIEA 2PA2A 3CXCH 1DGJA 1NJIJ 1FFVB 1N5WB 4WF9J 2ZJQJ 2QEXH 1W2BH 3WNZA 3H5QA 3AMZA 3NVZC 4EADA 4C80A 1KD1J 1YITH 1YJWH 2TPTA 3C2FA 3NVVC 5H1SO 3I56H 3L0GA 2DSJA 2W3RB 5AN9F 2QA4H 4GA5A 3PIPJ 3CD6H 1VQLH 4I9AA 1YHQH 1X1OA 1V97A 1N61B 1YTKA 1FO4A 5MPOC 4IO9J 4USAA 4AP8A 5MLCO 1VQNH 5GAEN 1VDVA 5DM6J 2ZJPJ 2WP4A 1YTDA 1QVGH 1QPQA 1K8AJ 1Q81J 3C2VA 3CC2H 4U67J 4UY8M 1VQ9H 4WFBJ 2WK5A 5HUPA 1OTPA 4LHMA 1QPNA
chains in the Genus database with same CATH topology
1WKIA 1M90J 3OW2H 1Q82J 3CCLH 3CF5J 3G6EH 3CCQH 3G71H 1N8RJ 1QVFH 5JVGJ 3G4SH 3CCUH 1Q7YJ 3CCVH 1JJ2H 3CPWH 1KC8J 1Y69K 1VQ8H 1VQ4H 3J7ZM 3CCSH 1VQ5H 3CMEH 2OTLH 3CCEH 1YIJH 5GAHN 5GADN 1K9MJ 1VQPH 1K73J 1VQMH 1YJ9H 1YI2H 1S72H 3CC7H 1VQ7H 4WCEJ 1M1KJ 1VQKH 1KQSH 5DM7J 1YJNH 3CMAH 1VQ6H 1VQOH 4IOAJ 3CCMH 1Q86J 4WFAJ 3CC4H 3CCRH 2OTJH 3PIOJ 5HL7J 2ZJRJ 5GAGN 4IOCJ 3DLLJ 3CCJH 4WFNJ 5JVHJ 3CXCH 2PA2A 1NJIJ 4WF9J 2ZJQJ 2QEXH 1W2BH 1KD1J 1YITH 1YJWH 3I56H 5H1SO 5AN9F 2QA4H 3PIPJ 3CD6H 1VQLH 1YHQH 4IO9J 5MLCO 1VQNH 5GAEN 5DM6J 2ZJPJ 1QVGH 1K8AJ 1Q81J 3CC2H 4U67J 4UY8M 1VQ9H 4WFBJ 3I55H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WKI A;  1M90 J;  3OW2 H;  1Q82 J;  3CCL H;  3CF5 J;  3G6E H;  3CCQ H;  3G71 H;  1N8R J;  1QVF H;  5JVG J;  3G4S H;  3CCU H;  1Q7Y J;  3CCV H;  1JJ2 H;  3CPW H;  1KC8 J;  1Y69 K;  1VQ8 H;  1VQ4 H;  3J7Z M;  3CCS H;  1VQ5 H;  3CME H;  2OTL H;  3CCE H;  1YIJ H;  5GAH N;  5GAD N;  1K9M J;  1VQP H;  1K73 J;  1VQM H;  1YJ9 H;  1YI2 H;  1S72 H;  3CC7 H;  1VQ7 H;  4WCE J;  1M1K J;  1VQK H;  1KQS H;  5DM7 J;  1YJN H;  3CMA H;  1VQ6 H;  1VQO H;  4IOA J;  3CCM H;  1Q86 J;  4WFA J;  3CC4 H;  3CCR H;  2OTJ H;  3PIO J;  5HL7 J;  2ZJR J;  5GAG N;  4IOC J;  3DLL J;  3CCJ H;  4WFN J;  5JVH J;  3CXC H;  2PA2 A;  1NJI J;  4WF9 J;  2ZJQ J;  2QEX H;  1W2B H;  1KD1 J;  1YIT H;  1YJW H;  3I56 H;  5H1S O;  5AN9 F;  2QA4 H;  3PIP J;  3CD6 H;  1VQL H;  1YHQ H;  4IO9 J;  5MLC O;  1VQN H;  5GAE N;  5DM6 J;  2ZJP J;  1QVG H;  1K8A J;  1Q81 J;  3CC2 H;  4U67 J;  4UY8 M;  1VQ9 H;  4WFB J;  3I55 H; 
#chains in the Genus database with same CATH topology
 1WKI A;  1N5X A;  1QAP A;  4KWW A;  2W55 B;  1M90 J;  3OW2 H;  3B9J C;  1Q82 J;  4GA4 A;  1UOU A;  3CCL H;  3CF5 J;  5EP8 A;  3C2O A;  3G6E H;  2W3S B;  3CCQ H;  2J0F A;  3VMM A;  3G71 H;  3L4P A;  5HUL A;  3NS1 C;  1N8R J;  4X46 A;  1QVF H;  1FFU B;  5JVG J;  3ETR C;  1NVJ A;  2JBM A;  2OMD A;  3G4S H;  3NVW C;  3CCU H;  1Q7Y J;  3FAH A;  2B7N A;  3CCV H;  5HUO A;  1FIQ C;  4US8 A;  2B7P A;  3AM9 A;  1ZXI B;  1JJ2 H;  3CPW H;  3NVY C;  3RPF A;  4EAF A;  4KWV A;  1Y69 K;  1KC8 J;  1O4U A;  2WK6 A;  1SIJ A;  1VQ8 H;  1VQ4 H;  3J7Z M;  3I55 H;  1WYG A;  3CCS H;  1VQ5 H;  3CME H;  1YTE A;  4YYY A;  3NRZ C;  1N62 B;  3EUB 4;  4YEK A;  3BII E;  2OTL H;  1VLB A;  3WO1 A;  1QPO A;  3CCE H;  1YIJ H;  1FM0 E;  2B7Q A;  5AYZ A;  3TQV A;  3C2R A;  5GAH N;  2I14 A;  4XR5 A;  5GAD N;  2W54 B;  5EY3 A;  1FMA E;  3AN1 A;  1VQP H;  1K9M J;  3FC4 A;  5AYY A;  1K73 J;  1VQM H;  3PAJ A;  1YJ9 H;  4C7Y A;  1YI2 H;  1S72 H;  3CC7 H;  1VQ7 H;  4WCE J;  1N60 B;  4GA6 A;  1N63 B;  1M1K J;  1VQK H;  1KQS H;  1BRW A;  4C7Z A;  5DM7 J;  1YJN H;  3CMA H;  1VQ6 H;  1QPR A;  1JRP B;  3C2E A;  1VQO H;  1RM6 A;  2E3T A;  4IOA J;  3CCM H;  4ZOH A;  1Q86 J;  4WFA J;  4US9 A;  1JRO B;  3CC4 H;  3CCR H;  2OTJ H;  3PIO J;  3SR6 C;  3WO0 A;  5HL7 J;  2ZJR J;  5GAG N;  2I1O A;  1SB3 A;  4IOC J;  3DLL J;  3CCJ H;  5AYX A;  2Q5W E;  1NVI E;  1AZY A;  4WFN J;  3GNN A;  5JVH J;  2QIE A;  2PA2 A;  3CXC H;  1DGJ A;  1NJI J;  1FFV B;  1N5W B;  4WF9 J;  2ZJQ J;  2QEX H;  1W2B H;  3WNZ A;  3H5Q A;  3AMZ A;  3NVZ C;  4EAD A;  4C80 A;  1KD1 J;  1YIT H;  1YJW H;  2TPT A;  3C2F A;  3NVV C;  5H1S O;  3I56 H;  3L0G A;  2DSJ A;  2W3R B;  5AN9 F;  2QA4 H;  4GA5 A;  3PIP J;  3CD6 H;  1VQL H;  4I9A A;  1YHQ H;  1X1O A;  1V97 A;  1N61 B;  1YTK A;  1FO4 A;  5MPO C;  4IO9 J;  4USA A;  4AP8 A;  5MLC O;  1VQN H;  5GAE N;  1VDV A;  5DM6 J;  2ZJP J;  2WP4 A;  1YTD A;  1QVG H;  1QPQ A;  1K8A J;  1Q81 J;  3C2V A;  3CC2 H;  4U67 J;  4UY8 M;  1VQ9 H;  4WFB J;  2WK5 A;  5HUP A;  1OTP A;  4LHM A;  1QPN A; 
#chains in the Genus database with same CATH homology
 1WKI A;  1M90 J;  3OW2 H;  1Q82 J;  3CCL H;  3CF5 J;  3G6E H;  3CCQ H;  3G71 H;  1N8R J;  1QVF H;  5JVG J;  3G4S H;  3CCU H;  1Q7Y J;  3CCV H;  1JJ2 H;  3CPW H;  1KC8 J;  1Y69 K;  1VQ8 H;  1VQ4 H;  3J7Z M;  3CCS H;  1VQ5 H;  3CME H;  2OTL H;  3CCE H;  1YIJ H;  5GAH N;  5GAD N;  1K9M J;  1VQP H;  1K73 J;  1VQM H;  1YJ9 H;  1YI2 H;  1S72 H;  3CC7 H;  1VQ7 H;  4WCE J;  1M1K J;  1VQK H;  1KQS H;  5DM7 J;  1YJN H;  3CMA H;  1VQ6 H;  1VQO H;  4IOA J;  3CCM H;  1Q86 J;  4WFA J;  3CC4 H;  3CCR H;  2OTJ H;  3PIO J;  5HL7 J;  2ZJR J;  5GAG N;  4IOC J;  3DLL J;  3CCJ H;  4WFN J;  5JVH J;  3CXC H;  2PA2 A;  1NJI J;  4WF9 J;  2ZJQ J;  2QEX H;  1W2B H;  1KD1 J;  1YIT H;  1YJW H;  3I56 H;  5H1S O;  5AN9 F;  2QA4 H;  3PIP J;  3CD6 H;  1VQL H;  1YHQ H;  4IO9 J;  5MLC O;  1VQN H;  5GAE N;  5DM6 J;  2ZJP J;  1QVG H;  1K8A J;  1Q81 J;  3CC2 H;  4U67 J;  4UY8 M;  1VQ9 H;  4WFB J;  3I55 H; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...