1Q86V

Crystal structure of cca-phe-cap-biotin bound simultaneously at half occupancy to both the a-site and p-site of the the 50s ribosomal subunit.
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural insights into peptide bond formation.
pubmed doi rcsb
total genus 9
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2003-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF01246 Ribosomal_L24e Ribosomal protein L24e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 1q86V00
1K73V 1YITU 3I56U 3G71U 3CCJU 3CC4U 1VQNU 1Q81V 3OW2T 3CPWT 1Q7YV 1YJ9U 1VQ6U 1YHQU 1VQPU 1VQ5U 1VQLU 3CCVU 3CCSU 3CCLU 1S72U 3I55U 5AN9G 1NJIV 1M90V 3CXCT 1VQMU 3G6EU 1VQ7U 3CD6U 1YJNU 1JJ2T 1YJWU 3CMEU 1K9MV 1VQOU 1VQ9U 3G4SU 1YI2U 1VQ8U 2OTLU 2QA4U 1Q82V 1M1KV 3CC7U 2OTJU 1K8AV 3CCUU 3CC2U 1QVGT 1KD1V 1KQST 1QVFT 1YIJU 1Q86V 3CCRU 1W2BT 3CCEU 1KC8V 3CMAU 1VQ4U 3CCMU 2QEXU 1N8RV 3CCQU 1VQKU
chains in the Genus database with same CATH superfamily
3ABRA 3I56U 3CC4U 3OW2T 1Q7YV 3CCVU 5AN9G 3CXCT 1VQMU 3CD6U 1JJ2T 1K9MV 2QEZA 1YI2U 2QA4U 2OTJU 3ABQA 3ANYA 3CCRU 3CCEU 1KC8V 1VQ4U 3CCMU 1N8RV 3CCQU 1YITU 3G71U 3CPWT 1VQ6U 1VQPU 3CCSU 3I55U 1JJDA 1YJNU 3J7ZX 1VQ9U 3G4SU 3CC7U 1QVGT 1KD1V 1Q86V 3AO0A 3CMAU 2QEXU 3CC2U 5H1SY 3CCJU 1YHQU 1VQLU 1S72U 3CMEU 2OTLU 1M1KV 1KQST 1QVFT 1K73V 1VQNU 4UY8X 3ABOA 1Q81V 1YJ9U 1VQ5U 3CCLU 1NJIV 1M90V 3G6EU 2JZ6A 5DM6U 1VQ7U 5MLCY 1YJWU 3ABSA 1VQOU 1VQ8U 1Q82V 1K8AV 3CCUU 1YIJU 1W2BT 1VQKU
chains in the Genus database with same CATH topology
1K73V 1YITU 3I56U 3G71U 3CCJU 3CC4U 1VQNU 1Q81V 3OW2T 3CPWT 1Q7YV 1YJ9U 1VQ6U 1YHQU 1VQPU 1VQ5U 1VQLU 3CCVU 3CCSU 3CCLU 1S72U 3I55U 5AN9G 1NJIV 1M90V 3CXCT 1VQMU 3G6EU 1VQ7U 3CD6U 1JJDA 1YJNU 1JJ2T 1YJWU 3CMEU 1K9MV 1VQOU 1VQ9U 3G4SU 1YI2U 1VQ8U 2OTLU 2QA4U 1Q82V 1M1KV 3CC7U 2OTJU 1K8AV 3CCUU 3CC2U 1QVGT 1KD1V 1KQST 1QVFT 1YIJU 1Q86V 3CCRU 1W2BT 3CCEU 1KC8V 3CMAU 1VQ4U 3CCMU 2QEXU 1N8RV 3CCQU 1VQKU
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K73 V;  1YIT U;  3I56 U;  3G71 U;  3CCJ U;  3CC4 U;  1VQN U;  1Q81 V;  3OW2 T;  3CPW T;  1Q7Y V;  1YJ9 U;  1VQ6 U;  1YHQ U;  1VQP U;  1VQ5 U;  1VQL U;  3CCV U;  3CCS U;  3CCL U;  1S72 U;  3I55 U;  5AN9 G;  1NJI V;  1M90 V;  3CXC T;  1VQM U;  3G6E U;  1VQ7 U;  3CD6 U;  1YJN U;  1JJ2 T;  1YJW U;  3CME U;  1K9M V;  1VQO U;  1VQ9 U;  3G4S U;  1YI2 U;  1VQ8 U;  2OTL U;  2QA4 U;  1Q82 V;  1M1K V;  3CC7 U;  2OTJ U;  1K8A V;  3CCU U;  3CC2 U;  1QVG T;  1KD1 V;  1KQS T;  1QVF T;  1YIJ U;  1Q86 V;  3CCR U;  1W2B T;  3CCE U;  1KC8 V;  3CMA U;  1VQ4 U;  3CCM U;  2QEX U;  1N8R V;  3CCQ U;  1VQK U; 
#chains in the Genus database with same CATH topology
 3ABR A;  3I56 U;  3CC4 U;  3OW2 T;  1Q7Y V;  3CCV U;  5AN9 G;  3CXC T;  1VQM U;  3CD6 U;  1JJ2 T;  1K9M V;  2QEZ A;  1YI2 U;  2QA4 U;  2OTJ U;  3ABQ A;  3ANY A;  3CCR U;  3CCE U;  1KC8 V;  1VQ4 U;  3CCM U;  1N8R V;  3CCQ U;  1YIT U;  3G71 U;  3CPW T;  1VQ6 U;  1VQP U;  3CCS U;  3I55 U;  1JJD A;  1YJN U;  3J7Z X;  1VQ9 U;  3G4S U;  3CC7 U;  1QVG T;  1KD1 V;  1Q86 V;  3AO0 A;  3CMA U;  2QEX U;  3CC2 U;  5H1S Y;  3CCJ U;  1YHQ U;  1VQL U;  1S72 U;  3CME U;  2OTL U;  1M1K V;  1KQS T;  1QVF T;  1K73 V;  1VQN U;  4UY8 X;  3ABO A;  1Q81 V;  1YJ9 U;  1VQ5 U;  3CCL U;  1NJI V;  1M90 V;  3G6E U;  2JZ6 A;  5DM6 U;  1VQ7 U;  5MLC Y;  1YJW U;  3ABS A;  1VQO U;  1VQ8 U;  1Q82 V;  1K8A V;  3CCU U;  1YIJ U;  1W2B T;  1VQK U; 
#chains in the Genus database with same CATH homology
 1K73 V;  1YIT U;  3I56 U;  3G71 U;  3CCJ U;  3CC4 U;  1VQN U;  1Q81 V;  3OW2 T;  3CPW T;  1Q7Y V;  1YJ9 U;  1VQ6 U;  1YHQ U;  1VQP U;  1VQ5 U;  1VQL U;  3CCV U;  3CCS U;  3CCL U;  1S72 U;  3I55 U;  5AN9 G;  1NJI V;  1M90 V;  3CXC T;  1VQM U;  3G6E U;  1VQ7 U;  3CD6 U;  1JJD A;  1YJN U;  1JJ2 T;  1YJW U;  3CME U;  1K9M V;  1VQO U;  1VQ9 U;  3G4S U;  1YI2 U;  1VQ8 U;  2OTL U;  2QA4 U;  1Q82 V;  1M1K V;  3CC7 U;  2OTJ U;  1K8A V;  3CCU U;  3CC2 U;  1QVG T;  1KD1 V;  1KQS T;  1QVF T;  1YIJ U;  1Q86 V;  3CCR U;  1W2B T;  3CCE U;  1KC8 V;  3CMA U;  1VQ4 U;  3CCM U;  2QEX U;  1N8R V;  3CCQ U;  1VQK U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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