1Q8DA

The crystal structure of gdnf family co-receptor alpha 1 domain 3
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
108
structure length
100
Chain Sequence
ERPNCLSLQDSCKTNYICRSRLADFFTNCQPESRSVSNCLKENYADCLLAYSGLIGTVMTPNVAPWCDCSNSGNDLEDCLKFLNFFKDNTCLKNAIQAFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hormone/growth factor receptor
molecule keywords GDNF family receptor alpha 1
publication title The structure of GFRalpha1 domain 3 reveals new insights into GDNF binding and RET activation.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 36
structure length 100
sequence length 108
ec nomenclature
pdb deposition date 2003-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02351 GDNF GDNF/GAS1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.110 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin V; domain 1 1q8dA00
1Q8DA
chains in the Genus database with same CATH superfamily
2IE6A 2ZHJA 4JWLA 1UPTB 4Z21A 4C7PA 1G5NA 1M9IA 4MDVA 2QEZA 4FHRB 1DM5A 4JMIA 2K6XA 3ABSA 3AO0A 1PBVA 3ABQA 1AIIA 1MCXA 4JXHA 2H0MA 1HVDA 2XO2A 1HVFA 1W45A 4FQ0C 4KN4X 1R8SE 2ZHIA 2ZOCA 1AVRA 2IE7A 1AVCA 4JMOA 1ANNA 1BCZA 4OIYA 3ABRA 2IICA 1BC1A 1BCYA 1YGMA 1N42A 1SAVA 2R09A 1ALAA 2RANA 2VXGA 2HYWA 3LTLA 1HVEA 2II2A 1Q8DA 2OY9A 1KU1A 1A8BA 3USWA 3AJCA 1AEIA 1XSZA 1BO9A 1LKVX 2H0KA 1I4AA 1R4AE 3HJLA 1A8AA 4KMUX 1ANWA 1HM6A 3ABOA 1N44A 1S9DE 1W3WA 1XJLA 4JK1X 1BC0A 3ANYA 3BRXA 1N00A 2HSNA 4A4PA 4Q2SA 4D7RA 4EVHA 1AVHA 1BCWA 1AOWA 4C0AA 1YJ0A 2HYUA 2XO3A 1BC9A 1W7BA 1N41A 3USYA 3TW5A 3SWVA 1DK5A 1BC3A 2HYVA 1R8ME 1ANXA 1C1KA 1RE0B 1YCNA 2H0LA 2Q4CA 3L8NA 4X9PA 4D7QA 4KN7X 1QC7A 1HAKA 4EVFA 1XT0B 3SOHB 1YIIA 2R0DA 1AXNA 1HVGA 4L5MA 1R8QE 4HREA 4MDUA
chains in the Genus database with same CATH topology
1KU1A 3AJCA 1R8SE 1BC9A 1XSZA 4KN4X 1LKVX 3USYA 4JMOA 4JWLA 4OIYA 3TW5A 4Z21A 3SWVA 4C7PA 1R8ME 3HJLA 1RE0B 4KMUX 3L8NA 4D7QA 4KN7X 4FHRB 4JMIA 1QC7A 1S9DE 2K6XA 1PBVA 1XT0B 4JK1X 2R09A 3SOHB 2R0DA 3LTLA 4JXHA 2HSNA 4A4PA 4D7RA 4C0AA 4L5MA 1R8QE 1Q8DA 4FQ0C 3USWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q8D A; 
#chains in the Genus database with same CATH topology
 2IE6 A;  2ZHJ A;  4JWL A;  1UPT B;  4Z21 A;  4C7P A;  1G5N A;  1M9I A;  4MDV A;  2QEZ A;  4FHR B;  1DM5 A;  4JMI A;  2K6X A;  3ABS A;  3AO0 A;  1PBV A;  3ABQ A;  1AII A;  1MCX A;  4JXH A;  2H0M A;  1HVD A;  2XO2 A;  1HVF A;  1W45 A;  4FQ0 C;  4KN4 X;  1R8S E;  2ZHI A;  2ZOC A;  1AVR A;  2IE7 A;  1AVC A;  4JMO A;  1ANN A;  1BCZ A;  4OIY A;  3ABR A;  2IIC A;  1BC1 A;  1BCY A;  1YGM A;  1N42 A;  1SAV A;  2R09 A;  1ALA A;  2RAN A;  2VXG A;  2HYW A;  3LTL A;  1HVE A;  2II2 A;  1Q8D A;  2OY9 A;  1KU1 A;  1A8B A;  3USW A;  3AJC A;  1AEI A;  1XSZ A;  1BO9 A;  1LKV X;  2H0K A;  1I4A A;  1R4A E;  3HJL A;  1A8A A;  4KMU X;  1ANW A;  1HM6 A;  3ABO A;  1N44 A;  1S9D E;  1W3W A;  1XJL A;  4JK1 X;  1BC0 A;  3ANY A;  3BRX A;  1N00 A;  2HSN A;  4A4P A;  4Q2S A;  4D7R A;  4EVH A;  1AVH A;  1BCW A;  1AOW A;  4C0A A;  1YJ0 A;  2HYU A;  2XO3 A;  1BC9 A;  1W7B A;  1N41 A;  3USY A;  3TW5 A;  3SWV A;  1DK5 A;  1BC3 A;  2HYV A;  1R8M E;  1ANX A;  1C1K A;  1RE0 B;  1YCN A;  2H0L A;  2Q4C A;  3L8N A;  4X9P A;  4D7Q A;  4KN7 X;  1QC7 A;  1HAK A;  4EVF A;  1XT0 B;  3SOH B;  1YII A;  2R0D A;  1AXN A;  1HVG A;  4L5M A;  1R8Q E;  4HRE A;  4MDU A; 
#chains in the Genus database with same CATH homology
 1KU1 A;  3AJC A;  1R8S E;  1BC9 A;  1XSZ A;  4KN4 X;  1LKV X;  3USY A;  4JMO A;  4JWL A;  4OIY A;  3TW5 A;  4Z21 A;  3SWV A;  4C7P A;  1R8M E;  3HJL A;  1RE0 B;  4KMU X;  3L8N A;  4D7Q A;  4KN7 X;  4FHR B;  4JMI A;  1QC7 A;  1S9D E;  2K6X A;  1PBV A;  1XT0 B;  4JK1 X;  2R09 A;  3SOH B;  2R0D A;  3LTL A;  4JXH A;  2HSN A;  4A4P A;  4D7R A;  4C0A A;  4L5M A;  1R8Q E;  1Q8D A;  4FQ0 C;  3USW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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