1QAEA

The active site of serratia endonuclease contains a conserved magnesium-water cluster
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
240
structure length
240
Chain Sequence
IDNCAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANAALKVDRGHQAPLASLAGVSDWESLNYLSNITPQKSDLNQGAWARLEDQERKLIDRADISSVYTVTGPLYERDMGKLPGTQKAHTIPSAYWKVIFINNSPAVNHYAAFLFDQNTPKGADFCQFRVTVDEIEKRTGLIIWAGLPDDVQASLKSKPGVLPELMGCKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endonuclease
molecule keywords PROTEIN (EXTRACELLULAR ENDONUCLEASE)
publication title The active site of Serratia endonuclease contains a conserved magnesium-water cluster.
pubmed doi rcsb
source organism Serratia marcescens
total genus 76
structure length 240
sequence length 240
chains with identical sequence B
ec nomenclature ec 3.1.30.2: Serratia marcescens nuclease.
pdb deposition date 1999-03-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01223 Endonuclease_NS DNA/RNA non-specific endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.570.10 Alpha Beta 3-Layer(aba) Sandwich Extracellular Endonuclease; Chain A Extracellular Endonuclease, subunit A 1qaeA00
5KXAA 5LIAA 4GTXA 4QGOA 5DLWA 2XRGA 4A1NA 2XGRA 4E3YA 4ZG9A 4GTYA 3NKPA 2XH3A 5L0BA 2O3BA 3NKRA 5HRTA 3WAVA 1QAEA 5INHA 5L0KA 3NKMA 5LQQA 5L0EA 1ZM8A 4ZGAA 4ZG6A 4QH0A 4QN0A 3S5BA 3NKOA 3WAYA 3NKNA 3OWVA 3WAWA 1G8TA 5GKCA 5IJSA 2XR9A 1QL0A 3NKQA 3WAXA 3ISMA 4ZG7A 4GTZA 5DLVA 5GKPA 4B56A 5IJQA 5DLTA 1SMNA 4GTWA
chains in the Genus database with same CATH superfamily
5KXAA 5LIAA 4GTXA 4QGOA 5DLWA 2XRGA 4A1NA 2XGRA 4E3YA 4ZG9A 4GTYA 3NKPA 2XH3A 5L0BA 2O3BA 3NKRA 5HRTA 3WAVA 1QAEA 5INHA 5L0KA 3NKMA 5LQQA 5L0EA 1ZM8A 4ZGAA 4ZG6A 4QH0A 4QN0A 3S5BA 3NKOA 3WAYA 3NKNA 3OWVA 3WAWA 1G8TA 5GKCA 5IJSA 2XR9A 1QL0A 3NKQA 3WAXA 3ISMA 4ZG7A 4GTZA 5DLVA 5GKPA 4B56A 5IJQA 5DLTA 1SMNA 4GTWA
chains in the Genus database with same CATH topology
5KXAA 5LIAA 4GTXA 4QGOA 5DLWA 2XRGA 4A1NA 2XGRA 4E3YA 4ZG9A 4GTYA 3NKPA 2XH3A 5L0BA 2O3BA 3NKRA 5HRTA 3WAVA 1QAEA 5INHA 5L0KA 3NKMA 5LQQA 5L0EA 1ZM8A 4ZGAA 4ZG6A 4QH0A 4QN0A 3S5BA 3NKOA 3WAYA 3NKNA 3OWVA 3WAWA 1G8TA 5GKCA 5IJSA 2XR9A 1QL0A 3NKQA 3WAXA 3ISMA 4ZG7A 4GTZA 5DLVA 5GKPA 4B56A 5IJQA 5DLTA 1SMNA 4GTWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KXA A;  5LIA A;  4GTX A;  4QGO A;  5DLW A;  2XRG A;  4A1N A;  2XGR A;  4E3Y A;  4ZG9 A;  4GTY A;  3NKP A;  2XH3 A;  5L0B A;  2O3B A;  3NKR A;  5HRT A;  3WAV A;  1QAE A;  5INH A;  5L0K A;  3NKM A;  5LQQ A;  5L0E A;  1ZM8 A;  4ZGA A;  4ZG6 A;  4QH0 A;  4QN0 A;  3S5B A;  3NKO A;  3WAY A;  3NKN A;  3OWV A;  3WAW A;  1G8T A;  5GKC A;  5IJS A;  2XR9 A;  1QL0 A;  3NKQ A;  3WAX A;  3ISM A;  4ZG7 A;  4GTZ A;  5DLV A;  5GKP A;  4B56 A;  5IJQ A;  5DLT A;  1SMN A;  4GTW A; 
#chains in the Genus database with same CATH topology
 5KXA A;  5LIA A;  4GTX A;  4QGO A;  5DLW A;  2XRG A;  4A1N A;  2XGR A;  4E3Y A;  4ZG9 A;  4GTY A;  3NKP A;  2XH3 A;  5L0B A;  2O3B A;  3NKR A;  5HRT A;  3WAV A;  1QAE A;  5INH A;  5L0K A;  3NKM A;  5LQQ A;  5L0E A;  1ZM8 A;  4ZGA A;  4ZG6 A;  4QH0 A;  4QN0 A;  3S5B A;  3NKO A;  3WAY A;  3NKN A;  3OWV A;  3WAW A;  1G8T A;  5GKC A;  5IJS A;  2XR9 A;  1QL0 A;  3NKQ A;  3WAX A;  3ISM A;  4ZG7 A;  4GTZ A;  5DLV A;  5GKP A;  4B56 A;  5IJQ A;  5DLT A;  1SMN A;  4GTW A; 
#chains in the Genus database with same CATH homology
 5KXA A;  5LIA A;  4GTX A;  4QGO A;  5DLW A;  2XRG A;  4A1N A;  2XGR A;  4E3Y A;  4ZG9 A;  4GTY A;  3NKP A;  2XH3 A;  5L0B A;  2O3B A;  3NKR A;  5HRT A;  3WAV A;  1QAE A;  5INH A;  5L0K A;  3NKM A;  5LQQ A;  5L0E A;  1ZM8 A;  4ZGA A;  4ZG6 A;  4QH0 A;  4QN0 A;  3S5B A;  3NKO A;  3WAY A;  3NKN A;  3OWV A;  3WAW A;  1G8T A;  5GKC A;  5IJS A;  2XR9 A;  1QL0 A;  3NKQ A;  3WAX A;  3ISM A;  4ZG7 A;  4GTZ A;  5DLV A;  5GKP A;  4B56 A;  5IJQ A;  5DLT A;  1SMN A;  4GTW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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