1QCVA

Rubredoxin variant (pfrd-xc4) folds without iron
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
53
structure length
53
Chain Sequence
AKWVLKITGYIYDEDAGDPDNGISPGTKFEELPDDWVAPITGAPKSEFEKLED
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Pyrococcus furiosus
publication title Contribution of surface salt bridges to protein stability.
pubmed doi rcsb
molecule keywords PROTEIN (RUBREDOXIN VARIANT PFRD-XC4)
total genus 2
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 1999-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1qcvA00
1IU6A 1T9OA 5AI2A 3PWFA 1YK5A 1NNQA 1T9PA 2PYAA 5RXNA 3A44A 4YWLA 1S2ZA 2KN9A 1IROA 1YUZA 3QVDA 2V3BB 5IY0A 3MPSA 1BQ8A 2RDVA 1R0HA 2QL0A 1S24A 8RXNA 1LTLA 1LKPA 1B13A 5AI3A 1DX8A 3KYWA 4YWMA 1IRNA 3RZTA 1H7VA 2DSXA 2PVEA 1E8JA 1RYTA 1YK4A 2HR5A 1R0IA 1BRFA 1JYBA 1B2JA 1BE7A 1FHHA 1LKMA 2PVXA 2KKDA 1RDGA 3RZ6A 1YUXA 1RB9A 3KYVA 6RXNA 1IU5A 1LKOA 4ME3A 2LCQA 1SMUA 3KYXA 4AR4A 1QYBA 1QCVA 2VL6A 1R0FA 7RXNA 3RYGA 1DVBA 1SMWA 2MS3A 1R0JA 1SMMA 1RDVA 2GMGA 3PZAA 1ZRPA 1BQ9A 1C09A 1S30A 1RWDA 2K2DA 3KYUA 3KYYA 1CADA 1B2OA 1T9QA 4AR3A 2M4YA 4TPUA 1VCXA 4POGA 1YV1A 4RXNA 1FHMA 1R0GA 4K9FA 4AR6A 1CAAA 1BFYA 3SS2A 4AR5A 1B71A 4POFA
chains in the Genus database with same CATH superfamily
4A3JL 5AI2A 3LWRB 2Y0SP 2JI1A 5MF6A 4JAEA 3HOVL 5RXNA 2M4VA 1IROA 5GADc 4UY81 2YU9L 1PFYA 1IW7D 4AI3A 2V3BB 2ZIXA 1Y1VL 2QL0A 2NVYL 1OWCA 3RZOL 1LTLA 4B8CD 1LKPA 4LHNA 4U671 3S2DL 3WWLA 3H9BA 1I50L 1H7VA 4XXBB 3S2HL 1E8JA 3PO2L 2ERSA 1YK4A 1JYBA 3HOUL 1LKMA 3RZDL 1SFOL 2XJPA 1NXGA 2AUSB 3P8BA 2CKAA 4ME3A 3KYXA 2H12A 2NVXL 1TWHL 5IYCL 2VL6A 3FDJA 1R0FA 4BXXL 3PIO1 5DM71 4WFN1 1VZGA 1P7PA 1SMMA 3S16L 2GMGA 4BBSL 1C09A 5M3ML 1T9QA 3J7Z1 4TPUA 1TWGL 3J7Y1 2R92L 1FHMA 4A3CL 3QQCE 4QIWP 1BFYA 3SS2A 3S1QL 4AR5A 5C4JL 4XGHA 1IU6A 1I3QL 2JA8L 4Y52L 2B63L 3S15L 1NNQA 4AHWA 5M5YL 2PYAA 4YWLA 1S2ZA 5MFPA 2XJSA 1Y1WL 3IU3I 4BY7L 1R0HA 3B0AB 2XJVA 4A3ML 2BE5D 3K7AL 3LWQB 2NYDA 2XJRA 3HKZP 5K2ME 4AYBP 2NVQL 3NFPI 5M5WL 4LHLA 2XJTA 2PPTA 3HAXC 2HR5A 3PKJA 4C3IL 3HOYL 2PVXA 2KKDA 5JVG1 3M3YL 3RZ6A 5IP7L 5MLC3 1YUXA 1RB9A 3LWPB 3KYVA 4V196 4AI2A 2AYJA 1LKOA 2XJUA 5GAGc 4AR4A 4JAFA 1QYBA 2L0ZA 3HOZL 3M4OL 1OWBA 2M6PA 5C4XL 4TVMA 3PZAA 1ZRPA 3S1ML 1BQ9A 1S30A 1CADA 4AR3A 2JA6L 1VCXA 3GTPL 5JVH1 1PFVA 4C2M1 3LWVB 5C3EL 4C3HL 1CAAA 2O5JD 3H9CA 1B71A 1T9OA 5IYDL 2PMZP 3GTML 1QQTA 2AQCA 3PWFA 1YK5A 4A3DL 2M6OA 3PL5A 4ZN3B 5M5XL 3QVDA 3PKIA 5IY0A 1TWAL 2C6BA 3MPSA 1BQ8A 3JR7A 5H1Sc 5MFZA 2Z3RB 8RXNA 3HOXL 3H99A 2JI2A 1B13A 2EY4E 1VZIA 3ZG6A 2JA5L 3KYWA 4YWMA 4AHXA 5FJ8L 4AHYA 3H0GL 2HVYC 1RYTA 5EINC 3S14L 1ODHA 3FKIL 1R0IA 1BRFA 1B2JA 1FHHA 2Z3QB 2E2HL 3S1NL 2V0FA 4E6YA 2JA7L 1IU5A 2J9UB 5EIOC 5GAHc 2APOB 3I4NL 1QCVA 1PFWA 3GTLL 1WJVA 3PIP1 3RYGA 2C6AA 1PZXA 1SMWA 1R0JA 1I6HL 4AI1A 1RWDA 4A3EL 5M3FL 3GTOL 2WAQP 1B2OA 2NVTL 2M4YA 3HJYB 1TWFL 1R9TL 2E2JL 1YV1A 4RXNA 1R0GA 3MQKB 2JI3A 1RYQA 5GAEc 4AR6A 2CKCA 4POFA 2WB1P 2XJQA 1F4LA 4BBRL 4Y7NL 1T9PA 2R93L 3A44A 5AN9H 2KN9A 1Z92B 1YUZA 3P2AA 4C3JL 3S17L 5IP9L 2RDVA 3WWNB 1VZHA 1S24A 4JAGA 2V0EA 4GS7D 2A69D 4ZN1B 3HJWB 5AI3A 3H97A 4A3FL 3B08B 3GTGL 1DX8A 3CQZL 5MGNA 1IRNA 2PSMC 1PFUA 3RZTA 2DSXA 2PVEA 2A68D 3GTQL 4A3GL 4A3BL 3HOWL 3VPBE 3GTJL 3LWOB 4AHZA 1BE7A 4AI0A 4A3IL 1RDGA 1WCML 6RXNA 3PO3L 2E2IL 2LCQA 4A3LL 1SMUA 2A6ED 7RXNA 4G6BA 1DVBA 5DM61 5C44L 2MS3A 4BY1L 3GTKL 4JADA 2B5ID 1RDVA 5FLML 1K83L 2RFKB 1TWCL 2CR8A 3K35A 3KYUA 2K2DA 3KYYA 2A6HD 2R7ZL 3LNLA 4A93L 3S1RL 1NXEA 3MSUA 2VUML 4POGA 4X6AL 4K9FA 4A3KL 3LPEB 5IYBL 2ERJA 3H3VM 3I4ML
chains in the Genus database with same CATH topology
1IU6A 1T9OA 2XJQA 5AI2A 2JI1A 5MF6A 3PWFA 1YK5A 1NNQA 4JAEA 2M6OA 4AHWA 1T9PA 2PYAA 5RXNA 2M4VA 3A44A 4YWLA 1S2ZA 4ZN3B 2KN9A 5AN9H 1IROA 5GADc 1Z92B 4UY81 1IW7D 1YUZA 3QVDA 4AI3A 2V3BB 2ZIXA 3PKIA 5IY0A 2C6BA 3MPSA 5MFPA 3P2AA 1BQ8A 2XJSA 5H1Sc 3IU3I 2RDVA 3WWNB 1R0HA 2QL0A 5MFZA 1VZHA 2Z3RB 1S24A 1OWCA 3B0AB 4JAGA 2XJVA 8RXNA 2V0EA 4GS7D 2A69D 2BE5D 2JI2A 4ZN1B 1LTLA 4B8CD 1LKPA 1B13A 5AI3A 2NYDA 4LHNA 1VZIA 3B08B 2XJRA 3ZG6A 4U671 1DX8A 5K2ME 3KYWA 3WWLA 3NFPI 5MGNA 4YWMA 1IRNA 2PSMC 4AHXA 3RZTA 4LHLA 1H7VA 2XJTA 2DSXA 2PVEA 2A68D 4XXBB 4AHYA 2PPTA 1E8JA 1RYTA 5EINC 2ERSA 3VPBE 1YK4A 2HR5A 1ODHA 4AHZA 1R0IA 1BRFA 1JYBA 3PKJA 1B2JA 1BE7A 1FHHA 1LKMA 2PVXA 2Z3QB 2KKDA 4AI0A 1RDGA 5JVG1 2XJPA 3RZ6A 5MLC3 1YUXA 2V0FA 1RB9A 1NXGA 4E6YA 3KYVA 4V196 3P8BA 4AI2A 6RXNA 1IU5A 2AYJA 1LKOA 2CKAA 2J9UB 2XJUA 5GAHc 5EIOC 4JAFA 4ME3A 1SMUA 3KYXA 2LCQA 2H12A 4AR4A 1QYBA 1QCVA 2L0ZA 2VL6A 1R0FA 2A6ED 3PIO1 1WJVA 7RXNA 3RYGA 4WFN1 5DM71 3PIP1 1OWBA 2M6PA 2C6AA 4G6BA 1DVBA 5DM61 1VZGA 1SMWA 2MS3A 1R0JA 4JADA 4TVMA 2B5ID 1SMMA 1RDVA 2GMGA 3PZAA 2CR8A 1ZRPA 1BQ9A 1C09A 3K35A 4AI1A 1S30A 1RWDA 2K2DA 3KYUA 3KYYA 2A6HD 1CADA 1B2OA 1T9QA 4AR3A 3J7Z1 2M4YA 3LNLA 4TPUA 1NXEA 1VCXA 5GAGc 3MSUA 3J7Y1 4POGA 5JVH1 1YV1A 4RXNA 1FHMA 1R0GA 4K9FA 2JI3A 1RYQA 5GAEc 3QQCE 3LPEB 4AR6A 1CAAA 1BFYA 3SS2A 2O5JD 2ERJA 4AR5A 2CKCA 4XGHA 1B71A 4POFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IU6 A;  1T9O A;  5AI2 A;  3PWF A;  1YK5 A;  1NNQ A;  1T9P A;  2PYA A;  5RXN A;  3A44 A;  4YWL A;  1S2Z A;  2KN9 A;  1IRO A;  1YUZ A;  3QVD A;  2V3B B;  5IY0 A;  3MPS A;  1BQ8 A;  2RDV A;  1R0H A;  2QL0 A;  1S24 A;  8RXN A;  1LTL A;  1LKP A;  1B13 A;  5AI3 A;  1DX8 A;  3KYW A;  4YWM A;  1IRN A;  3RZT A;  1H7V A;  2DSX A;  2PVE A;  1E8J A;  1RYT A;  1YK4 A;  2HR5 A;  1R0I A;  1BRF A;  1JYB A;  1B2J A;  1BE7 A;  1FHH A;  1LKM A;  2PVX A;  2KKD A;  1RDG A;  3RZ6 A;  1YUX A;  1RB9 A;  3KYV A;  6RXN A;  1IU5 A;  1LKO A;  4ME3 A;  2LCQ A;  1SMU A;  3KYX A;  4AR4 A;  1QYB A;  1QCV A;  2VL6 A;  1R0F A;  7RXN A;  3RYG A;  1DVB A;  1SMW A;  2MS3 A;  1R0J A;  1SMM A;  1RDV A;  2GMG A;  3PZA A;  1ZRP A;  1BQ9 A;  1C09 A;  1S30 A;  1RWD A;  2K2D A;  3KYU A;  3KYY A;  1CAD A;  1B2O A;  1T9Q A;  4AR3 A;  2M4Y A;  4TPU A;  1VCX A;  4POG A;  1YV1 A;  4RXN A;  1FHM A;  1R0G A;  4K9F A;  4AR6 A;  1CAA A;  1BFY A;  3SS2 A;  4AR5 A;  1B71 A;  4POF A; 
#chains in the Genus database with same CATH topology
 4A3J L;  5AI2 A;  3LWR B;  2Y0S P;  2JI1 A;  5MF6 A;  4JAE A;  3HOV L;  5RXN A;  2M4V A;  1IRO A;  5GAD c;  4UY8 1;  2YU9 L;  1PFY A;  1IW7 D;  4AI3 A;  2V3B B;  2ZIX A;  1Y1V L;  2QL0 A;  2NVY L;  1OWC A;  3RZO L;  1LTL A;  4B8C D;  1LKP A;  4LHN A;  4U67 1;  3S2D L;  3WWL A;  3H9B A;  1I50 L;  1H7V A;  4XXB B;  3S2H L;  1E8J A;  3PO2 L;  2ERS A;  1YK4 A;  1JYB A;  3HOU L;  1LKM A;  3RZD L;  1SFO L;  2XJP A;  1NXG A;  2AUS B;  3P8B A;  2CKA A;  4ME3 A;  3KYX A;  2H12 A;  2NVX L;  1TWH L;  5IYC L;  2VL6 A;  3FDJ A;  1R0F A;  4BXX L;  3PIO 1;  5DM7 1;  4WFN 1;  1VZG A;  1P7P A;  1SMM A;  3S16 L;  2GMG A;  4BBS L;  1C09 A;  5M3M L;  1T9Q A;  3J7Z 1;  4TPU A;  1TWG L;  3J7Y 1;  2R92 L;  1FHM A;  4A3C L;  3QQC E;  4QIW P;  1BFY A;  3SS2 A;  3S1Q L;  4AR5 A;  5C4J L;  4XGH A;  1IU6 A;  1I3Q L;  2JA8 L;  4Y52 L;  2B63 L;  3S15 L;  1NNQ A;  4AHW A;  5M5Y L;  2PYA A;  4YWL A;  1S2Z A;  5MFP A;  2XJS A;  1Y1W L;  3IU3 I;  4BY7 L;  1R0H A;  3B0A B;  2XJV A;  4A3M L;  2BE5 D;  3K7A L;  3LWQ B;  2NYD A;  2XJR A;  3HKZ P;  5K2M E;  4AYB P;  2NVQ L;  3NFP I;  5M5W L;  4LHL A;  2XJT A;  2PPT A;  3HAX C;  2HR5 A;  3PKJ A;  4C3I L;  3HOY L;  2PVX A;  2KKD A;  5JVG 1;  3M3Y L;  3RZ6 A;  5IP7 L;  5MLC 3;  1YUX A;  1RB9 A;  3LWP B;  3KYV A;  4V19 6;  4AI2 A;  2AYJ A;  1LKO A;  2XJU A;  5GAG c;  4AR4 A;  4JAF A;  1QYB A;  2L0Z A;  3HOZ L;  3M4O L;  1OWB A;  2M6P A;  5C4X L;  4TVM A;  3PZA A;  1ZRP A;  3S1M L;  1BQ9 A;  1S30 A;  1CAD A;  4AR3 A;  2JA6 L;  1VCX A;  3GTP L;  5JVH 1;  1PFV A;  4C2M 1;  3LWV B;  5C3E L;  4C3H L;  1CAA A;  2O5J D;  3H9C A;  1B71 A;  1T9O A;  5IYD L;  2PMZ P;  3GTM L;  1QQT A;  2AQC A;  3PWF A;  1YK5 A;  4A3D L;  2M6O A;  3PL5 A;  4ZN3 B;  5M5X L;  3QVD A;  3PKI A;  5IY0 A;  1TWA L;  2C6B A;  3MPS A;  1BQ8 A;  3JR7 A;  5H1S c;  5MFZ A;  2Z3R B;  8RXN A;  3HOX L;  3H99 A;  2JI2 A;  1B13 A;  2EY4 E;  1VZI A;  3ZG6 A;  2JA5 L;  3KYW A;  4YWM A;  4AHX A;  5FJ8 L;  4AHY A;  3H0G L;  2HVY C;  1RYT A;  5EIN C;  3S14 L;  1ODH A;  3FKI L;  1R0I A;  1BRF A;  1B2J A;  1FHH A;  2Z3Q B;  2E2H L;  3S1N L;  2V0F A;  4E6Y A;  2JA7 L;  1IU5 A;  2J9U B;  5EIO C;  5GAH c;  2APO B;  3I4N L;  1QCV A;  1PFW A;  3GTL L;  1WJV A;  3PIP 1;  3RYG A;  2C6A A;  1PZX A;  1SMW A;  1R0J A;  1I6H L;  4AI1 A;  1RWD A;  4A3E L;  5M3F L;  3GTO L;  2WAQ P;  1B2O A;  2NVT L;  2M4Y A;  3HJY B;  1TWF L;  1R9T L;  2E2J L;  1YV1 A;  4RXN A;  1R0G A;  3MQK B;  2JI3 A;  1RYQ A;  5GAE c;  4AR6 A;  2CKC A;  4POF A;  2WB1 P;  2XJQ A;  1F4L A;  4BBR L;  4Y7N L;  1T9P A;  2R93 L;  3A44 A;  5AN9 H;  2KN9 A;  1Z92 B;  1YUZ A;  3P2A A;  4C3J L;  3S17 L;  5IP9 L;  2RDV A;  3WWN B;  1VZH A;  1S24 A;  4JAG A;  2V0E A;  4GS7 D;  2A69 D;  4ZN1 B;  3HJW B;  5AI3 A;  3H97 A;  4A3F L;  3B08 B;  3GTG L;  1DX8 A;  3CQZ L;  5MGN A;  1IRN A;  2PSM C;  1PFU A;  3RZT A;  2DSX A;  2PVE A;  2A68 D;  3GTQ L;  4A3G L;  4A3B L;  3HOW L;  3VPB E;  3GTJ L;  3LWO B;  4AHZ A;  1BE7 A;  4AI0 A;  4A3I L;  1RDG A;  1WCM L;  6RXN A;  3PO3 L;  2E2I L;  2LCQ A;  4A3L L;  1SMU A;  2A6E D;  7RXN A;  4G6B A;  1DVB A;  5DM6 1;  5C44 L;  2MS3 A;  4BY1 L;  3GTK L;  4JAD A;  2B5I D;  1RDV A;  5FLM L;  1K83 L;  2RFK B;  1TWC L;  2CR8 A;  3K35 A;  3KYU A;  2K2D A;  3KYY A;  2A6H D;  2R7Z L;  3LNL A;  4A93 L;  3S1R L;  1NXE A;  3MSU A;  2VUM L;  4POG A;  4X6A L;  4K9F A;  4A3K L;  3LPE B;  5IYB L;  2ERJ A;  3H3V M;  3I4M L; 
#chains in the Genus database with same CATH homology
 1IU6 A;  1T9O A;  2XJQ A;  5AI2 A;  2JI1 A;  5MF6 A;  3PWF A;  1YK5 A;  1NNQ A;  4JAE A;  2M6O A;  4AHW A;  1T9P A;  2PYA A;  5RXN A;  2M4V A;  3A44 A;  4YWL A;  1S2Z A;  4ZN3 B;  2KN9 A;  5AN9 H;  1IRO A;  5GAD c;  1Z92 B;  4UY8 1;  1IW7 D;  1YUZ A;  3QVD A;  4AI3 A;  2V3B B;  2ZIX A;  3PKI A;  5IY0 A;  2C6B A;  3MPS A;  5MFP A;  3P2A A;  1BQ8 A;  2XJS A;  5H1S c;  3IU3 I;  2RDV A;  3WWN B;  1R0H A;  2QL0 A;  5MFZ A;  1VZH A;  2Z3R B;  1S24 A;  1OWC A;  3B0A B;  4JAG A;  2XJV A;  8RXN A;  2V0E A;  4GS7 D;  2A69 D;  2BE5 D;  2JI2 A;  4ZN1 B;  1LTL A;  4B8C D;  1LKP A;  1B13 A;  5AI3 A;  2NYD A;  4LHN A;  1VZI A;  3B08 B;  2XJR A;  3ZG6 A;  4U67 1;  1DX8 A;  5K2M E;  3KYW A;  3WWL A;  3NFP I;  5MGN A;  4YWM A;  1IRN A;  2PSM C;  4AHX A;  3RZT A;  4LHL A;  1H7V A;  2XJT A;  2DSX A;  2PVE A;  2A68 D;  4XXB B;  4AHY A;  2PPT A;  1E8J A;  1RYT A;  5EIN C;  2ERS A;  3VPB E;  1YK4 A;  2HR5 A;  1ODH A;  4AHZ A;  1R0I A;  1BRF A;  1JYB A;  3PKJ A;  1B2J A;  1BE7 A;  1FHH A;  1LKM A;  2PVX A;  2Z3Q B;  2KKD A;  4AI0 A;  1RDG A;  5JVG 1;  2XJP A;  3RZ6 A;  5MLC 3;  1YUX A;  2V0F A;  1RB9 A;  1NXG A;  4E6Y A;  3KYV A;  4V19 6;  3P8B A;  4AI2 A;  6RXN A;  1IU5 A;  2AYJ A;  1LKO A;  2CKA A;  2J9U B;  2XJU A;  5GAH c;  5EIO C;  4JAF A;  4ME3 A;  1SMU A;  3KYX A;  2LCQ A;  2H12 A;  4AR4 A;  1QYB A;  1QCV A;  2L0Z A;  2VL6 A;  1R0F A;  2A6E D;  3PIO 1;  1WJV A;  7RXN A;  3RYG A;  4WFN 1;  5DM7 1;  3PIP 1;  1OWB A;  2M6P A;  2C6A A;  4G6B A;  1DVB A;  5DM6 1;  1VZG A;  1SMW A;  2MS3 A;  1R0J A;  4JAD A;  4TVM A;  2B5I D;  1SMM A;  1RDV A;  2GMG A;  3PZA A;  2CR8 A;  1ZRP A;  1BQ9 A;  1C09 A;  3K35 A;  4AI1 A;  1S30 A;  1RWD A;  2K2D A;  3KYU A;  3KYY A;  2A6H D;  1CAD A;  1B2O A;  1T9Q A;  4AR3 A;  3J7Z 1;  2M4Y A;  3LNL A;  4TPU A;  1NXE A;  1VCX A;  5GAG c;  3MSU A;  3J7Y 1;  4POG A;  5JVH 1;  1YV1 A;  4RXN A;  1FHM A;  1R0G A;  4K9F A;  2JI3 A;  1RYQ A;  5GAE c;  3QQC E;  3LPE B;  4AR6 A;  1CAA A;  1BFY A;  3SS2 A;  2O5J D;  2ERJ A;  4AR5 A;  2CKC A;  4XGH A;  1B71 A;  4POF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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