1QHUA

Mammalian blood serum haemopexin deglycosylated and in complex with its ligand haem
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
412
structure length
398
Chain Sequence
IEQCSDGWSFDATTLDDNGTMLFFKDEFVWKSHRGIRELISERWKNFIGPVDAAFRHGHTSVYLIKGDKVWVYTSPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNRKWFWDLTTGTKKERSWPAVGNCTSALRWLGRYYCFQGNQFLRFNPVSGEVPPGYPLDVRDYFLSCPGRGHRSHGHESTRCDPDLVLSAMVSDNHGATYVFSGSHYWRLDTNRDGWHSWPIAHQWPQGPSTVDAAFSWEDKLYLIQDTKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLDLKSGAQATWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLYLIHGPNLYCYRHVDKLNAAKNLPQPQRVSRLLGCTH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of hemopexin reveals a novel high-affinity heme site formed between two beta-propeller domains.
pubmed doi rcsb
molecule tags Binding protein
molecule keywords PROTEIN (HEMOPEXIN)
total genus 82
structure length 398
sequence length 412
ec nomenclature
pdb deposition date 1999-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00045 Hemopexin Hemopexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.110.10.10 Mainly Beta 4 Propeller Hemopexin Hemopexin-like domain 1qhuA02
2.110.10.10 Mainly Beta 4 Propeller Hemopexin Hemopexin-like domain 1qhuA01
1GXDA 4OEIA 1RTGA 1CK7A 3S18A 4HSDA 4YEHA 1PEXA 1HXNA 3LP9A 2MQSA 4FU4A 2JXYA 1ITVA 1QHUA 3C7XA 3V6NA 3OYOA 4FVLA 4G0DA 4LL2A 1FBLA 4AUOA 1SU3A 2CLTA 4RT6B 3BA0A 1QJSA 1GENA
chains in the Genus database with same CATH superfamily
1GXDA 4OEIA 1RTGA 1CK7A 3S18A 4HSDA 4YEHA 1PEXA 1HXNA 3LP9A 2MQSA 4FU4A 2JXYA 1ITVA 1QHUA 3C7XA 3V6NA 3OYOA 4FVLA 4G0DA 4LL2A 1FBLA 4AUOA 1SU3A 2CLTA 4RT6B 3BA0A 1QJSA 1GENA
chains in the Genus database with same CATH topology
1GXDA 4OEIA 1RTGA 1CK7A 3S18A 4HSDA 4YEHA 1PEXA 1HXNA 3LP9A 2MQSA 4FU4A 2JXYA 1ITVA 1QHUA 3C7XA 3V6NA 3OYOA 4FVLA 4G0DA 4LL2A 1FBLA 4AUOA 1SU3A 2CLTA 4RT6B 3BA0A 1QJSA 1GENA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GXD A;  4OEI A;  1RTG A;  1CK7 A;  3S18 A;  4HSD A;  4YEH A;  1PEX A;  1HXN A;  3LP9 A;  2MQS A;  4FU4 A;  2JXY A;  1ITV A;  1QHU A;  3C7X A;  3V6N A;  3OYO A;  4FVL A;  4G0D A;  4LL2 A;  1FBL A;  4AUO A;  1SU3 A;  2CLT A;  4RT6 B;  3BA0 A;  1QJS A;  1GEN A; 
#chains in the Genus database with same CATH topology
 1GXD A;  4OEI A;  1RTG A;  1CK7 A;  3S18 A;  4HSD A;  4YEH A;  1PEX A;  1HXN A;  3LP9 A;  2MQS A;  4FU4 A;  2JXY A;  1ITV A;  1QHU A;  3C7X A;  3V6N A;  3OYO A;  4FVL A;  4G0D A;  4LL2 A;  1FBL A;  4AUO A;  1SU3 A;  2CLT A;  4RT6 B;  3BA0 A;  1QJS A;  1GEN A; 
#chains in the Genus database with same CATH homology
 1GXD A;  4OEI A;  1RTG A;  1CK7 A;  3S18 A;  4HSD A;  4YEH A;  1PEX A;  1HXN A;  3LP9 A;  2MQS A;  4FU4 A;  2JXY A;  1ITV A;  1QHU A;  3C7X A;  3V6N A;  3OYO A;  4FVL A;  4G0D A;  4LL2 A;  1FBL A;  4AUO A;  1SU3 A;  2CLT A;  4RT6 B;  3BA0 A;  1QJS A;  1GEN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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