The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
53
|
sequence length |
264
|
structure length |
264
|
Chain Sequence |
VSIKKSSGLNFDNTAIAINAGKGLEFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGAITIGNKNDDKLTLWTTPDPSPNCRIHSDNDCKFTLVLTKCGSQVLATVAALAVSGDLSSMTGTVASVSIFLRFDQNGVLMENSSLKKHYWNFRNGNSTNANPYTNAVGFMPNLLAYPKTQSQTAKNNIVSQVYLHGDKTKPMILTITLNGTSESTETSEVSTYSMSFTWSWESGKYTTETFATNSYTFSYIAQE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for a fibrous protein.
pubmed doi rcsb |
| molecule keywords |
ADENOVIRUS FIBRE
|
| molecule tags |
Fibre protein
|
| source organism |
Human adenovirus 2
|
| total genus |
53
|
| structure length |
264
|
| sequence length |
264
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 1999-06-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00541 | Adeno_knob | Adenoviral fibre protein (knob domain) |
| A | PF00608 | Adeno_shaft | Adenoviral fibre protein (repeat/shaft region) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Laminin | reovirus attachment protein sigma1; domain 1 | ||
| Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Adenovirus pIV-related, attachment domain |
#chains in the Genus database with same CATH superfamily 4K6T A; 2O39 A; 1KAC A; 3EXV A; 2BZU A; 2VRS A; 4GU4 A; 2J1K C; 4LIY A; 2JJL A; 2BT8 A; 4K6U A; 3S6X A; 1KNB A; 4K6W A; 2WST A; 3L89 A; 1KKE A; 4WYJ A; 2BZV A; 1P6A A; 3O8E A; 2WGU A; 1UXE A; 2WGT A; 2W9L C; 4K6V A; 2J2J A; 1UXA A; 3N0I A; 1QIU A; 1H7Z A; 3L88 A; 1V1H A; 3BQ4 A; 2BT7 A; 2QLK A; 2WBV A; 4XL8 A; 4XQB A; 4GU3 A; 4XQA A; 3CNC A; 3QND A; 2WBW A; 3EXW A; 1V1I A; 2BSF A; 4ATZ A; 1QHV A; 1UXB A; 3F0Y A; 1NOB A; 4ZDG A; 1P69 A; 2J12 A; #chains in the Genus database with same CATH topology 3TBD A; 5IKR A; 4K6T A; 1EPJ A; 3CS7 L; 4GU4 A; 4YT7 L; 2BT8 A; 2BZ6 L; 2FD6 A; 3POY A; 2F9B L; 2P3F L; 4RS0 A; 1EPH A; 3F6U L; 2WGT A; 1L5G B; 3N8Z A; 1APO A; 1UXA A; 1YUF A; 1DDX A; 4A7I A; 4CUF A; 1UZK A; 1YUK B; 4FM5 A; 1V3X B; 5L30 L; 1EAI C; 3NTG A; 1C5M F; 1K37 A; 2M74 A; 3NTB A; 3LC5 B; 1V1I A; 2BSF A; 1BF9 A; 1FAX L; 3EOY A; 4CW8 A; 3QMO A; 2WYG B; 1PRH A; 1KIG L; 4X8U L; 4X8S L; 2Y7Z B; 4BTU A; 1LPK A; 1FJS L; 3TK5 B; 3S6X A; 1EPG A; 1F7M A; 1XKB A; 3HPT A; 1L3Y A; 2AYL A; 3SOB B; 3KQD L; 1ATE A; 1ZAQ A; 1ATD A; 2HOX A; 4M10 A; 4Y7A B; 2WBV A; 1AUT L; 1MQ6 L; 4XC5 A; 5IKT A; 2KL7 A; 5E8D A; 1QHV A; 1IGX A; 1KLI L; 3TGF A; 2XC4 L; 2VRS A; 1CVW L; 2J4I B; 3U7U G; 1HRF A; 3GCW E; 2RA0 L; 1IGZ A; 2H9E L; 4O02 B; 1ADX A; 2BZV A; 1G1T A; 1UXE A; 4MMZ B; 1A3P A; 5CIS A; 2WG3 C; 3N0I A; 1XDT R; 2BQ6 A; 5IKQ A; 1CQE A; 1FSB A; 3SOQ A; 3HS6 A; 2IUM A; 1HT5 A; 5IKV A; 2ADX A; 3IJE B; 4ISH L; 1W8B L; 4MMX B; 1NFW B; 2XBY L; 2K2T A; 2WST A; 2DDU A; 3KCG L; 3TH3 L; 2W86 A; 4JZE L; 4K6V A; 1NFU B; 1NQL B; 2W26 B; 4BXW A; 1LK9 A; 2BOX A; 4PH9 A; 2VWM K; 1PTH A; 4YT6 L; 3LAQ A; 2J2U B; 1EMO A; 1MQ5 L; 2J94 B; 4D62 A; 1G1S A; 4Y6D B; 3GIS X; 2PHB B; 2IUN A; 3CA7 A; 2J1K C; 3ZYG A; 4BDW A; 2J38 B; 1KNB A; 2OJ6 A; 2J34 B; 3LN0 A; 1HAF A; 2P3T A; 1KKE A; 5JBB E; 2UWO B; 2VVU L; 1YO8 A; 3Q3K B; 2EI8 B; 2RNL A; 4MMY B; 2BOH A; 2WZP P; 1X7A L; 2G00 L; 2WPL E; 4JYU L; 1DX5 I; 5JB9 E; 3EGF A; 2VH6 B; 3P5B L; 2BOK L; 2GD4 A; 3KRK A; 4BTT A; 1HJ7 A; 1W7X L; 4ISI L; 2W2O E; 4Z0L A; 2UWP B; 2WPJ E; 1PGE A; 4D0E A; 4OTJ A; 1FF7 A; 5F19 A; 3K9X A; 1G2L B; 1PXX A; 1WHE A; 2PR3 B; 3SW2 A; 4ZHA B; 4RRX A; 3IIT B; 2JKH L; 2VVC K; 2K2S B; 1JL9 A; 4CSY A; 1KSN B; 3QND A; 2WBW A; 2VWO L; 3F0Y A; 1KLJ L; 3HO5 A; 1XFE A; 1UZP A; 1KAC A; 3EXV A; 2HOR A; 1G1Q A; 1IVO C; 1IQJ L; 1DIY A; 3KQB L; 3QH0 A; 3N8V A; 2FLR L; 2OJ5 A; 3KQC L; 5JVZ A; 2YGO A; 2Q1J B; 4A94 C; 1I0U A; 3BQ4 A; 1O5D L; 1GK5 A; 4D63 A; 2Y5F L; 1IQN L; 1F0R B; 4RRZ A; 4ZDG A; 1P69 A; 2VJ3 A; 2WG4 B; 1IQE L; 3V65 B; 4RUT A; 2Y80 B; 2O39 A; 2EI7 B; 2B7D L; 1CVU A; 4RRY A; 4X8T L; 3MDL A; 1ATB A; 3KQE L; 1EQG A; 3NT1 A; 3ZPE A; 1SZB A; 1M1X B; 3HO3 A; 2BO2 A; 2OYU P; 2J2J A; 3ZYJ B; 4XL1 A; 2W2P E; 2BOU A; 1MOX C; 3TZI A; 2BQW A; 2QLK A; 2KB9 A; 1ATA A; 1FAK L; 3ASI A; 1IQL L; 3N8Y A; 1EQH A; 1U67 A; 4NGA L; 4YZU B; 5CKQ A; 2J95 B; 4K6W A; 3M37 L; 4LMF A; 4ZXX L; 5L2Y L; 1IJQ A; 2MGR A; 1P6A A; 1PFX L; 1DVA L; 2YGP A; 1XKA L; 3PGH A; 1J9C L; 1NFX B; 1K36 A; 3C9A C; 5JBC E; 1YGC L; 2BQ7 A; 2WPI E; 3GCX E; 1CCF A; 5COX A; 4NG9 L; 5FDQ A; 3FFG L; 4G1M B; 2WFX B; 4K6U A; 3FCS B; 2XBW L; 2P28 B; 3O8E A; 2Y5G L; 3OLT A; 1HX2 A; 1YUG A; 4RRW A; 5CKM A; 3U73 A; 1HCG B; 6COX A; 1HZ8 A; 1IP0 A; 2BT7 A; 2W2Q E; 2Y7X B; 4XBM A; 3V64 C; 2WPM E; 2Y38 A; 2P3F N; 4D0F A; 1NOB A; 3OLU A; 1P9J A; 3H5C B; 1NZI A; 3HS7 A; 1JBU L; 1N7D A; 2WFT A; 1EMN A; 2RHP A; 2FLB L; 3KK6 A; 3DEM A; 1TPG A; 4LOR A; 2D1J B; 2W9L C; 2W2M E; 4COX A; 3ZPF A; 4Z0K B; 5JB8 E; 1HT8 A; 1LMJ A; 2Y5H L; 4GU3 A; 3LTF B; 3ENS A; 2W2N E; 5I46 L; 5JBA E; 2J12 A; 3HO4 A; 1IQF L; 3LC3 B; 1Q4G A; 1IOX A; 1DQB A; 4ODB A; 2KV4 A; 4BTI A; 2MGP A; 3ELA L; 5KN5 C; 4M11 A; 1FFM A; 2CJI B; 3BT2 A; 5K0H B; 5L2Z L; 5JW1 A; 1WU1 B; 1LMM A; 2Y82 B; 1LQD A; 3N8Y B; 2I9B A; 3KL6 B; 1OB1 C; 1WHF A; 1IQK L; 3CEN L; 2Y81 B; 1NFY B; 2EI6 B; 2P93 L; 4ATZ A; 1EPI A; 1QFK L; 4JZF L; 1IOE L; 2P95 L; 2VWL L; 4Y76 B; 3TK6 B; 1IQG L; 3ZYI B; 3Q7D A; 2FZZ L; 2OYE P; 2I9A A; 3MQE A; 2H9E C; 5EGM B; 1COU A; 4X8V L; 2VWN L; 3F1S B; 3NJP C; 2WPH E; 3BT1 A; 1NT0 A; 4ZAE B; 1H7Z A; 1EZQ B; 5F1A A; 3N8W B; 1V1H A; 4JYV L; 1UZQ A; 2TGF A; 2NPR A; 3BPS E; 3R05 A; 1UXB A; 2P3U A; 1NPE B; 2PUQ L; 2W3I B; 4ZXY L; 4TGF A; 4LIY A; 1LPG A; 4CUE A; 4D90 A; 2VTW A; 4OTY A; 2XC0 L; 5JVY A; 3SOV A; 1N1I A; 4E1G A; 2WGU A; 1U8C B; 3LTG D; 1TOZ A; 1IQI L; 2WPK E; 1Z6C A; 1P0S L; 2VH0 B; 4AQT A; 1RFN B; 2W3K B; 4Y79 B; 5MHS A; 1F0S B; 3M36 L; 4Z6A L; 4XL8 A; 1FE2 A; 3EXW A; 1G2M B; 1UZJ A; 1TLE A; 4C16 A; 3HS5 A; 2VVV L; 2BZU A; 3N8W A; 4ZH8 B; 1URK A; 1CEJ A; 3N8X A; 4BXS A; 2XC5 L; 2FLG A; 4NA9 L; 1EBV A; 1Z6E L; 5CKN A; 3CFW A; 1HRE A; 3L88 A; 4CUD A; 1IQM L; 1LPZ A; 1EGF A; 3LN1 A; 4XQB A; 3CNC A; 3RR3 A; 3LIW B; 1IQH L; 1JV2 B; 1KLO A; 2P26 A; 4JZD L; 2XBV L; 4BDX A; 2JJL A; 5KIR A; 2WYJ B; 4XLW A; 2P94 L; 3L89 A; 3FBY A; 2P16 L; 4WYJ A; 1G1R A; 4Y7B B; 2XBX L; 1CCV A; 1HAE A; 1QIU A; 1F7E A; 1CX2 A; 2MHP A; 2KNI A; 2YGQ A; 4Y71 B; 4XQA A; 4O1Z A; 1APQ A; 2UWL B; 1B9W A; 2BMG A; 3QCW A; #chains in the Genus database with same CATH homology 4K6T A; 2O39 A; 1KAC A; 3EXV A; 2BZU A; 2VRS A; 4GU4 A; 2J1K C; 4LIY A; 2JJL A; 2BT8 A; 4K6U A; 3S6X A; 1KNB A; 4K6W A; 2WST A; 3L89 A; 1KKE A; 4WYJ A; 2BZV A; 1P6A A; 3O8E A; 2WGU A; 1UXE A; 2WGT A; 2W9L C; 4K6V A; 2J2J A; 1UXA A; 3N0I A; 1QIU A; 1H7Z A; 3L88 A; 1V1H A; 3BQ4 A; 2BT7 A; 2QLK A; 2WBV A; 4XL8 A; 4XQB A; 4GU3 A; 4XQA A; 3CNC A; 3QND A; 2WBW A; 3EXW A; 1V1I A; 2BSF A; 4ATZ A; 1QHV A; 1UXB A; 3F0Y A; 1NOB A; 4ZDG A; 1P69 A; 2J12 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
