1QJQA

Ferric hydroxamate receptor from escherichia coli (fhua)
Total Genus 195
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
195
sequence length
707
structure length
707
Chain Sequence
ESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPSSHHHHHHGSSVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Tonb dependent receptor
molecule keywords FERRIC HYDROXAMATE RECEPTOR
publication title Crystal Structure of the Antibiotic Albomycin in Complex with the Outer Membrane Protein Fhua
pubmed rcsb
source organism Escherichia coli
total genus 195
structure length 707
sequence length 707
ec nomenclature
pdb deposition date 1999-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 1qjqA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 1qjqA01
3V8XA 3RGMA 2W78A 1XKWA 4RDTA 1FEPA 2GUFA 3M8DA 1KMPA 1QFFA 2GSKA 2W75A 4AIPA 3CSLA 3CSNA 3QLBA 2IAHA 2YSUA 3RGNA 1BY5A 1XKHA 1NQEA 4CU4A 1FI1A 3DDRA 1KMOA 4RDRA 4EPAA 1QFGA 3V89A 2GRXA 2W6TA 2W77A 2W6UA 2O5PA 2W76A 4B7OA 1PNZA 1BY3A 5FOKA 3FHHA 1NQHA 2W16A 1FCPA 4AIQA 1QJQA 2HDIA 2FCPA 1NQFA 3M8BA 2HDFA 1PO0A 1NQGA 3EFMA 1PO3A 1QKCA 1UJWA
chains in the Genus database with same CATH superfamily
1MPQA 3RGMA 3V8XA 1AF6A 1XKWA 1FEPA 2GUFA 3M8DA 1KMPA 2W78A 1QFFA 2GSKA 2W75A 1JBIA 4AIPA 3CSLA 1MPNA 1A0SP 3CSNA 3QLBA 2IAHA 2YSUA 3RGNA 1BY5A 1XKHA 1NQEA 4CU4A 1FI1A 3DDRA 1KMOA 4RDRA 4EPAA 1QFGA 3V89A 1A0TP 2GRXA 2W6TA 2W77A 2W6UA 2O5PA 2W76A 4B7OA 2MPRA 1PNZA 1BY3A 5FOKA 3FHHA 1MALA 1NQHA 2W16A 4RDTA 1OH2Q 1FCPA 1MPRA 4AIQA 1QJQA 2HDIA 2FCPA 1NQFA 1MPOA 1OH2P 1MPMA 3M8BA 2HDFA 1PO0A 1NQGA 3EFMA 1PO3A 1QKCA 1UJWA
chains in the Genus database with same CATH topology
3V8XA 3RGMA 2W78A 1XKWA 4RDTA 1FEPA 2GUFA 3M8DA 1KMPA 1QFFA 2GSKA 2W75A 4AIPA 3CSLA 3CSNA 3QLBA 2IAHA 2YSUA 3RGNA 1BY5A 1XKHA 1NQEA 4CU4A 1FI1A 3DDRA 1KMOA 4RDRA 4EPAA 1QFGA 3V89A 2GRXA 2W6TA 2W77A 2W6UA 2O5PA 2W76A 4B7OA 1PNZA 1BY3A 5FOKA 3FHHA 1NQHA 2W16A 1FCPA 4AIQA 1QJQA 2HDIA 2FCPA 1NQFA 3M8BA 2HDFA 1PO0A 1NQGA 3EFMA 1PO3A 1QKCA 1UJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3V8X A;  3RGM A;  2W78 A;  1XKW A;  4RDT A;  1FEP A;  2GUF A;  3M8D A;  1KMP A;  1QFF A;  2GSK A;  2W75 A;  4AIP A;  3CSL A;  3CSN A;  3QLB A;  2IAH A;  2YSU A;  3RGN A;  1BY5 A;  1XKH A;  1NQE A;  4CU4 A;  1FI1 A;  3DDR A;  1KMO A;  4RDR A;  4EPA A;  1QFG A;  3V89 A;  2GRX A;  2W6T A;  2W77 A;  2W6U A;  2O5P A;  2W76 A;  4B7O A;  1PNZ A;  1BY3 A;  5FOK A;  3FHH A;  1NQH A;  2W16 A;  1FCP A;  4AIQ A;  1QJQ A;  2HDI A;  2FCP A;  1NQF A;  3M8B A;  2HDF A;  1PO0 A;  1NQG A;  3EFM A;  1PO3 A;  1QKC A;  1UJW A; 
#chains in the Genus database with same CATH topology
 1MPQ A;  3RGM A;  3V8X A;  1AF6 A;  1XKW A;  1FEP A;  2GUF A;  3M8D A;  1KMP A;  2W78 A;  1QFF A;  2GSK A;  2W75 A;  1JBI A;  4AIP A;  3CSL A;  1MPN A;  1A0S P;  3CSN A;  3QLB A;  2IAH A;  2YSU A;  3RGN A;  1BY5 A;  1XKH A;  1NQE A;  4CU4 A;  1FI1 A;  3DDR A;  1KMO A;  4RDR A;  4EPA A;  1QFG A;  3V89 A;  1A0T P;  2GRX A;  2W6T A;  2W77 A;  2W6U A;  2O5P A;  2W76 A;  4B7O A;  2MPR A;  1PNZ A;  1BY3 A;  5FOK A;  3FHH A;  1MAL A;  1NQH A;  2W16 A;  4RDT A;  1OH2 Q;  1FCP A;  1MPR A;  4AIQ A;  1QJQ A;  2HDI A;  2FCP A;  1NQF A;  1MPO A;  1OH2 P;  1MPM A;  3M8B A;  2HDF A;  1PO0 A;  1NQG A;  3EFM A;  1PO3 A;  1QKC A;  1UJW A; 
#chains in the Genus database with same CATH homology
 3V8X A;  3RGM A;  2W78 A;  1XKW A;  4RDT A;  1FEP A;  2GUF A;  3M8D A;  1KMP A;  1QFF A;  2GSK A;  2W75 A;  4AIP A;  3CSL A;  3CSN A;  3QLB A;  2IAH A;  2YSU A;  3RGN A;  1BY5 A;  1XKH A;  1NQE A;  4CU4 A;  1FI1 A;  3DDR A;  1KMO A;  4RDR A;  4EPA A;  1QFG A;  3V89 A;  2GRX A;  2W6T A;  2W77 A;  2W6U A;  2O5P A;  2W76 A;  4B7O A;  1PNZ A;  1BY3 A;  5FOK A;  3FHH A;  1NQH A;  2W16 A;  1FCP A;  4AIQ A;  1QJQ A;  2HDI A;  2FCP A;  1NQF A;  3M8B A;  2HDF A;  1PO0 A;  1NQG A;  3EFM A;  1PO3 A;  1QKC A;  1UJW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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