1QKCA

Escherichia coli ferric hydroxamate uptake receptor (fhua) in complex delta two-albomycin
Total Genus 195
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
195
sequence length
707
structure length
707
Chain Sequence
ESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPSSHHHHHHGSSVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Tonb dependent receptor
molecule keywords FERRIC HYDROXAMATE RECEPTOR
publication title Crystal Structure of the Antibiotic Albomycin in Complex with the Outer Membrane Protein Fhua
pubmed rcsb
source organism escherichia coli k-12
total genus 195
structure length 707
sequence length 707
ec nomenclature
pdb deposition date 1999-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 1qkcA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 1qkcA01
2GSKA 1NQGA 1QFFA 2GRXA 4B7OA 2W77A 1QKCA 1FI1A 3EFMA 2HDIA 1PNZA 2W6UA 1FEPA 4RDRA 3DDRA 4AIQA 2IAHA 3CSLA 1PO0A 1QJQA 2W78A 3QLBA 2GUFA 2YSUA 2W76A 5FOKA 4CU4A 1BY5A 1NQEA 3V8XA 1UJWA 1BY3A 2W75A 1QFGA 4AIPA 4RDTA 1KMPA 2W16A 3RGNA 3M8DA 3FHHA 2W6TA 1NQHA 2FCPA 1NQFA 2O5PA 4EPAA 3RGMA 1XKWA 1XKHA 1KMOA 2HDFA 3V89A 1FCPA 3CSNA 3M8BA 1PO3A
chains in the Genus database with same CATH superfamily
2GSKA 1MPRA 1QFFA 1NQGA 2GRXA 1MPQA 4B7OA 2W77A 1QKCA 1FI1A 1OH2P 3EFMA 2HDIA 1PNZA 2W6UA 1FEPA 2MPRA 4RDRA 3DDRA 4AIQA 2IAHA 3CSLA 1PO0A 1QJQA 2W78A 3QLBA 1MPMA 2GUFA 2YSUA 2W76A 1A0SP 1AF6A 5FOKA 1BY5A 1NQEA 3V8XA 4CU4A 1BY3A 1UJWA 1QFGA 4AIPA 2W75A 1KMPA 1MPNA 1FCPA 2W16A 1OH2Q 3RGNA 1MPOA 3M8DA 3FHHA 2W6TA 1NQHA 2FCPA 4RDTA 1NQFA 2O5PA 1MALA 4EPAA 3RGMA 1XKWA 1XKHA 1JBIA 1KMOA 2HDFA 3V89A 1A0TP 3CSNA 3M8BA 1PO3A
chains in the Genus database with same CATH topology
2GSKA 1NQGA 1QFFA 2GRXA 4B7OA 2W77A 1QKCA 1FI1A 3EFMA 2HDIA 1PNZA 2W6UA 1FEPA 4RDRA 3DDRA 4AIQA 2IAHA 3CSLA 1PO0A 1QJQA 2W78A 3QLBA 2GUFA 2YSUA 2W76A 5FOKA 4CU4A 1BY5A 1NQEA 3V8XA 1UJWA 1BY3A 2W75A 1QFGA 4AIPA 4RDTA 1KMPA 2W16A 3RGNA 3M8DA 3FHHA 2W6TA 1NQHA 2FCPA 1NQFA 2O5PA 4EPAA 3RGMA 1XKWA 1XKHA 1KMOA 2HDFA 3V89A 1FCPA 3CSNA 3M8BA 1PO3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GSK A;  1NQG A;  1QFF A;  2GRX A;  4B7O A;  2W77 A;  1QKC A;  1FI1 A;  3EFM A;  2HDI A;  1PNZ A;  2W6U A;  1FEP A;  4RDR A;  3DDR A;  4AIQ A;  2IAH A;  3CSL A;  1PO0 A;  1QJQ A;  2W78 A;  3QLB A;  2GUF A;  2YSU A;  2W76 A;  5FOK A;  4CU4 A;  1BY5 A;  1NQE A;  3V8X A;  1UJW A;  1BY3 A;  2W75 A;  1QFG A;  4AIP A;  4RDT A;  1KMP A;  2W16 A;  3RGN A;  3M8D A;  3FHH A;  2W6T A;  1NQH A;  2FCP A;  1NQF A;  2O5P A;  4EPA A;  3RGM A;  1XKW A;  1XKH A;  1KMO A;  2HDF A;  3V89 A;  1FCP A;  3CSN A;  3M8B A;  1PO3 A; 
#chains in the Genus database with same CATH topology
 2GSK A;  1MPR A;  1QFF A;  1NQG A;  2GRX A;  1MPQ A;  4B7O A;  2W77 A;  1QKC A;  1FI1 A;  1OH2 P;  3EFM A;  2HDI A;  1PNZ A;  2W6U A;  1FEP A;  2MPR A;  4RDR A;  3DDR A;  4AIQ A;  2IAH A;  3CSL A;  1PO0 A;  1QJQ A;  2W78 A;  3QLB A;  1MPM A;  2GUF A;  2YSU A;  2W76 A;  1A0S P;  1AF6 A;  5FOK A;  1BY5 A;  1NQE A;  3V8X A;  4CU4 A;  1BY3 A;  1UJW A;  1QFG A;  4AIP A;  2W75 A;  1KMP A;  1MPN A;  1FCP A;  2W16 A;  1OH2 Q;  3RGN A;  1MPO A;  3M8D A;  3FHH A;  2W6T A;  1NQH A;  2FCP A;  4RDT A;  1NQF A;  2O5P A;  1MAL A;  4EPA A;  3RGM A;  1XKW A;  1XKH A;  1JBI A;  1KMO A;  2HDF A;  3V89 A;  1A0T P;  3CSN A;  3M8B A;  1PO3 A; 
#chains in the Genus database with same CATH homology
 2GSK A;  1NQG A;  1QFF A;  2GRX A;  4B7O A;  2W77 A;  1QKC A;  1FI1 A;  3EFM A;  2HDI A;  1PNZ A;  2W6U A;  1FEP A;  4RDR A;  3DDR A;  4AIQ A;  2IAH A;  3CSL A;  1PO0 A;  1QJQ A;  2W78 A;  3QLB A;  2GUF A;  2YSU A;  2W76 A;  5FOK A;  4CU4 A;  1BY5 A;  1NQE A;  3V8X A;  1UJW A;  1BY3 A;  2W75 A;  1QFG A;  4AIP A;  4RDT A;  1KMP A;  2W16 A;  3RGN A;  3M8D A;  3FHH A;  2W6T A;  1NQH A;  2FCP A;  1NQF A;  2O5P A;  4EPA A;  3RGM A;  1XKW A;  1XKH A;  1KMO A;  2HDF A;  3V89 A;  1FCP A;  3CSN A;  3M8B A;  1PO3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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