1QLIA

Quail cysteine and glycine-rich protein, nmr, minimized average structure
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
59
structure length
59
Chain Sequence
AEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal binding protein
molecule keywords CYSTEINE AND GLYCINE-RICH PROTEIN
publication title Solution structure of the carboxyl-terminal LIM domain from quail cysteine-rich protein CRP2.
pubmed doi rcsb
source organism Coturnix japonica
total genus 9
structure length 59
sequence length 59
ec nomenclature
pdb deposition date 1997-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00412 LIM LIM domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.110.10 Mainly Beta Ribbon Cysteine Rich Protein Cysteine Rich Protein 1qliA00
2D8YA 2LXDA 1NYPA 1CXXA 1X62A 2CU8A 2O10A 2CORA 1WYHA 1V6GA 1X63A 1QLIA 1RUTX 2XQNT 3F6QB 4HI8B 2LZUA 1G47A 1CTLA 2CUPA 3IXEB 2MIUA 2CUQA 2CURA 1X64A 2DARA 4KFZA 2L6ZC 2XJZA 1J2OA 4HI9B 1X4LA 2JTNA 4JCJA 2D8XA 2KBXB 1X68A 2L4ZA 1IMLA 2L6YB 3MMKA 1IBIA 1B8TA 2D8ZA 1X61A 2CO8A 2DJ7A 2EGQA 1A7IA 2DFYC 2MBVA 1WIGA 1X3HA 1U5SB 1M3VA 2O13A 2EHEA 2YPAC 2DLOA 1X6AA 2XJYA 2IYBE
chains in the Genus database with same CATH superfamily
4UF0B 4BHWA 5FY1A 1WYHA 5LKTA 3ZLIA 2LZUA 2CUPA 4KFZA 4JCJA 3NIKA 3MMKA 1IBIA 1B8TA 2D8ZA 1A7IA 3NILA 5FXZA 5LKUA 2XJYA 2D8YA 2CORA 1X63A 1QLIA 1RUTX 3F6QB 3ZPOA 5FP3A 4HI9B 3NISA 5FY0A 2D8XA 2KBXB 1X68A 1IMLA 2CO8A 5LKZA 2EGQA 2XUEA 4EZ4A 2EHEA 5FXXA 1CTLA 2L6ZC 2IYBE 5FXWA 2LXDA 1NYPA 1CXXA 1X62A 1V6GA 2XQNT 1G47A 3IXEB 5LKXA 2CURA 2XJZA 4UF0A 2L4ZA 2DJ7A 1X61A 3NIMA 5A1LA 3AVRA 2O13A 2YPAC 3NINA 4EZHA 2CU8A 2O10A 3AVSA 4ASKA 4HI8B 2MIUA 5FY7A 2CUQA 1X64A 2DARA 3NIJA 4EYUA 1J2OA 1X4LA 2JTNA 3NIHA 5FXVA 5FYMA 2L6YB 2DFYC 2MBVA 1WIGA 1X3HA 1U5SB 1M3VA 2DLOA 1X6AA
chains in the Genus database with same CATH topology
4UF0B 4BHWA 5FY1A 1WYHA 5LKTA 3ZLIA 2LZUA 2CUPA 4KFZA 4JCJA 3NIKA 3MMKA 1IBIA 1B8TA 2D8ZA 1A7IA 3NILA 5FXZA 5LKUA 2XJYA 2D8YA 2CORA 1X63A 1QLIA 1RUTX 3F6QB 3ZPOA 5FP3A 4HI9B 3NISA 5FY0A 2D8XA 2KBXB 1X68A 1IMLA 2CO8A 5LKZA 2EGQA 2XUEA 4EZ4A 2EHEA 5FXXA 1CTLA 2L6ZC 2IYBE 5FXWA 2LXDA 1NYPA 1CXXA 1X62A 1V6GA 2XQNT 1G47A 3IXEB 5LKXA 2CURA 2XJZA 4UF0A 2L4ZA 2DJ7A 1X61A 3NIMA 5A1LA 3AVRA 2O13A 2YPAC 3NINA 4EZHA 2CU8A 2O10A 3AVSA 4ASKA 4HI8B 2MIUA 5FY7A 2CUQA 1X64A 2DARA 3NIJA 4EYUA 1J2OA 1X4LA 2JTNA 3NIHA 5FXVA 5FYMA 2L6YB 2DFYC 2MBVA 1WIGA 1X3HA 1U5SB 1M3VA 2DLOA 1X6AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D8Y A;  2LXD A;  1NYP A;  1CXX A;  1X62 A;  2CU8 A;  2O10 A;  2COR A;  1WYH A;  1V6G A;  1X63 A;  1QLI A;  1RUT X;  2XQN T;  3F6Q B;  4HI8 B;  2LZU A;  1G47 A;  1CTL A;  2CUP A;  3IXE B;  2MIU A;  2CUQ A;  2CUR A;  1X64 A;  2DAR A;  4KFZ A;  2L6Z C;  2XJZ A;  1J2O A;  4HI9 B;  1X4L A;  2JTN A;  4JCJ A;  2D8X A;  2KBX B;  1X68 A;  2L4Z A;  1IML A;  2L6Y B;  3MMK A;  1IBI A;  1B8T A;  2D8Z A;  1X61 A;  2CO8 A;  2DJ7 A;  2EGQ A;  1A7I A;  2DFY C;  2MBV A;  1WIG A;  1X3H A;  1U5S B;  1M3V A;  2O13 A;  2EHE A;  2YPA C;  2DLO A;  1X6A A;  2XJY A;  2IYB E; 
#chains in the Genus database with same CATH topology
 4UF0 B;  4BHW A;  5FY1 A;  1WYH A;  5LKT A;  3ZLI A;  2LZU A;  2CUP A;  4KFZ A;  4JCJ A;  3NIK A;  3MMK A;  1IBI A;  1B8T A;  2D8Z A;  1A7I A;  3NIL A;  5FXZ A;  5LKU A;  2XJY A;  2D8Y A;  2COR A;  1X63 A;  1QLI A;  1RUT X;  3F6Q B;  3ZPO A;  5FP3 A;  4HI9 B;  3NIS A;  5FY0 A;  2D8X A;  2KBX B;  1X68 A;  1IML A;  2CO8 A;  5LKZ A;  2EGQ A;  2XUE A;  4EZ4 A;  2EHE A;  5FXX A;  1CTL A;  2L6Z C;  2IYB E;  5FXW A;  2LXD A;  1NYP A;  1CXX A;  1X62 A;  1V6G A;  2XQN T;  1G47 A;  3IXE B;  5LKX A;  2CUR A;  2XJZ A;  4UF0 A;  2L4Z A;  2DJ7 A;  1X61 A;  3NIM A;  5A1L A;  3AVR A;  2O13 A;  2YPA C;  3NIN A;  4EZH A;  2CU8 A;  2O10 A;  3AVS A;  4ASK A;  4HI8 B;  2MIU A;  5FY7 A;  2CUQ A;  1X64 A;  2DAR A;  3NIJ A;  4EYU A;  1J2O A;  1X4L A;  2JTN A;  3NIH A;  5FXV A;  5FYM A;  2L6Y B;  2DFY C;  2MBV A;  1WIG A;  1X3H A;  1U5S B;  1M3V A;  2DLO A;  1X6A A; 
#chains in the Genus database with same CATH homology
 4UF0 B;  4BHW A;  5FY1 A;  1WYH A;  5LKT A;  3ZLI A;  2LZU A;  2CUP A;  4KFZ A;  4JCJ A;  3NIK A;  3MMK A;  1IBI A;  1B8T A;  2D8Z A;  1A7I A;  3NIL A;  5FXZ A;  5LKU A;  2XJY A;  2D8Y A;  2COR A;  1X63 A;  1QLI A;  1RUT X;  3F6Q B;  3ZPO A;  5FP3 A;  4HI9 B;  3NIS A;  5FY0 A;  2D8X A;  2KBX B;  1X68 A;  1IML A;  2CO8 A;  5LKZ A;  2EGQ A;  2XUE A;  4EZ4 A;  2EHE A;  5FXX A;  1CTL A;  2L6Z C;  2IYB E;  5FXW A;  2LXD A;  1NYP A;  1CXX A;  1X62 A;  1V6G A;  2XQN T;  1G47 A;  3IXE B;  5LKX A;  2CUR A;  2XJZ A;  4UF0 A;  2L4Z A;  2DJ7 A;  1X61 A;  3NIM A;  5A1L A;  3AVR A;  2O13 A;  2YPA C;  3NIN A;  4EZH A;  2CU8 A;  2O10 A;  3AVS A;  4ASK A;  4HI8 B;  2MIU A;  5FY7 A;  2CUQ A;  1X64 A;  2DAR A;  3NIJ A;  4EYU A;  1J2O A;  1X4L A;  2JTN A;  3NIH A;  5FXV A;  5FYM A;  2L6Y B;  2DFY C;  2MBV A;  1WIG A;  1X3H A;  1U5S B;  1M3V A;  2DLO A;  1X6A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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