1QN7A

Crystal structure of the t(-27) adenovirus major late promoter tata box variant bound to wild-type tbp (arabidopsis thaliana tbp isoform 2). tata element recognition by the tata box-binding protein has been conserved throughout evolution.
Total Genus 48
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
186
structure length
186
Chain Sequence
DLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution
pubmed doi rcsb
molecule tags Tata box-binding protein (tbp)
source organism Arabidopsis thaliana
molecule keywords TRANSCRIPTION INITIATION FACTOR TFIID-1
total genus 48
structure length 186
sequence length 186
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1qn7A01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1qn7A02
1TBAB 1QTSA 1AISA 5IYBP 1NVPA 1NH2A 3OC3C 2MJ7A 2VJ0A 1YTFA 1QN4A 1PCZA 2G30A 2IV8A 1QN5A 4RODB 1QNCA 1QNBA 1KYDA 4ROCB 1VTLE 1KY6A 2D0AA 1W80A 3HS8A 5IYCP 1CDWA 5IYDP 1VOKA 2D0CA 1B9KA 1VTOA 1D3UA 3VN5A 1E42A 3H1ZA 2D0BA 3OCIA 1QN9A 3HS9A 1QN7A 1QN3A 1QN6A 4B0AA 1C9BB 1PZDA 1QN8A 1YTBA 1TBPA 1KYFA 1KYUA 3ASMA 3EIKA 1QTPA 4ROEB 4WZSD 1RM1A 1VOLB 1JFIC 1R4XA 2Z8UA 1QNAA 1TGHA 1KY7A 4PY5A 1QNEA 1MP9A 1NGMA 2IV9A
chains in the Genus database with same CATH superfamily
1TBAB 5EPCA 1AISA 1YTFA 2YH5A 3OH9A 2G30A 2OOXA 1KO9A 2ZFDB 1QNCA 4EJYA 4BJUA 4D7RA 1KY6A 4IL8A 2HL9A 5IYCP 4Q11A 1KFQA 2JHNA 3D4VA 4EAKA 1N3CA 1VOKA 4I8OA 1B9KA 1WQAA 2FKFA 1LXTA 1T6AA 1PVSA 3VN5A 1D3UA 2QR1A 1KFIA 1E42A 1QN9A 2QRCA 3HS9A 4EAGA 1LWYA 1YTBA 1PZDA 3TE5A 3CWUA 1QN8A 3OH6A 3ASMA 1RM1A 2Y8LA 1R4XA 5KL0A 3T4NA 3C04A 1QNAA 1TGHA 1C4GA 2R5XA 3ULXA 3OSTA 1PCJX 4WX8A 1PCMX 3CVTA 2DKAA 1EUVA 1QTSA 5IYBP 1M3QA 2JPIA 1NH2A 2H5AX 1UT4A 1PCZA 2F7LA 2Z0FA 1M3HA 3PMGA 3PDKA 3D7QA 5F9CA 1KYDA 2O3OA 2MZ8A 2YA3A 1VTLE 2QLVA 3OSEA 1K2YX 1W80A 2NOBA 1CDWA 2JOIA 2V92A 2HL8A 3RPJA 4D7QA 1QN7A 2NOZA 1QN6A 2XHIA 4EAJA 1XSZA 2OOYA 2NOFA 2DKCA 1QTPA 5HSHA 4ROEB 3CWTA 2NWVA 1LWWA 1JFIC 1VOLB 2Z8UA 5JN5A 4EJZA 3N89A 2FKMX 2HKPA 3KRMA 4PY5A 5AN4A 1MP9A 4EAIA 1VTOA 2H4LX 1FN7A 1NGMA 3F0ZA 2NLVA 1N39A 1YQMA 2Y8QA 2MJ7A 2VJ0A 3DPUA 2IV8A 4MRQA 3NA5A 1QN5A 2NOLA 5JMVD 4ROCB 2DKDA 2D0AA 3HS8A 5BMPA 2HZMA 1P5GX 3F10A 1V5SA 4EALA 1N3AA 1EBMA 5BMNA 4TPSA 3H1ZA 3OCIA 3CW7A 1QN3A 1WJWA 1UT7A 3SNSA 1Q9UA 1TBPA 2FGTA 3EIKA 4WZSD 1UL7A 3ENCA 4HJHA 4C7PA 1LWVA 3OSMA 3BKQX 3KTUA 3CWSA 3EAYA 4DULA 2NOEA 1YQKA 1M5Q1 3OLPA 2PWWA 3I3WA 3I0XA 1NVPA 2EHBD 3OC3C 1YQRA 1QN4A 4WXAA 2FUVA 4RODB 1YQLA 1MPGA 2HZSA 1QNBA 1P5DX 3CVSA 1TUOA 2V8QA 2V9JA 3I0WA 5IYDP 2NVMA 2D0CA 1HU0A 2NOIA 2D0BA 1J3MA 4B0AA 1K35A 2QRDA 3ENOC 1C9BB 2I5WA 4QG5A 2NOHA 1C47A 1JDYA 1KYFA 1KYUA 4CFFA 2JHJA 3CWAA 3DPTA 1DIZA 2QREA 3OGDA 2LAEA 3RSMA 1KY7A 3UW2A 3IH7A 1QNEA 1VKLA 2IV9A 3TDHA
chains in the Genus database with same CATH topology
1TBAB 1AISA 1YTFA 2YH5A 2G30A 1KO9A 1QNCA 4EJYA 1KY6A 5IYCP 4Q11A 1N3CA 1VOKA 4I8OA 1B9KA 1D3UA 3VN5A 1E42A 1QN9A 3HS9A 1LWYA 1YTBA 1PZDA 1QN8A 3ASMA 1RM1A 1R4XA 1QNAA 1TGHA 3ULXA 3OSTA 1QTSA 1M3QA 5IYBP 1NH2A 1UT4A 1PCZA 1M3HA 1KYDA 2O3OA 2MZ8A 1VTLE 1W80A 2NOBA 1CDWA 2JOIA 3RPJA 2NOZA 1QN7A 1QN6A 2XHIA 2NOFA 1QTPA 4ROEB 1VOLB 1LWWA 1JFIC 2Z8UA 4EJZA 3N89A 3KRMA 4PY5A 5AN4A 1MP9A 1VTOA 1FN7A 3F0ZA 1N39A 1YQMA 2MJ7A 2VJ0A 3DPUA 2IV8A 1QN5A 2NOLA 4ROCB 2D0AA 3HS8A 2HZMA 3F10A 1N3AA 1EBMA 4TPSA 3H1ZA 3OCIA 1QN3A 1UT7A 3SNSA 1TBPA 2FGTA 3EIKA 4WZSD 1LWVA 3OSMA 3KTUA 4DULA 2NOEA 1YQKA 3I0XA 1NVPA 3OC3C 1YQRA 1QN4A 4RODB 1YQLA 2HZSA 1QNBA 3I0WA 5IYDP 2D0CA 1HU0A 2NOIA 2D0BA 4B0AA 1C9BB 2NOHA 2I5WA 1KYFA 1KYUA 3DPTA 2LAEA 1KY7A 3IH7A 1QNEA 1NGMA 2IV9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TBA B;  1QTS A;  1AIS A;  5IYB P;  1NVP A;  1NH2 A;  3OC3 C;  2MJ7 A;  2VJ0 A;  1YTF A;  1QN4 A;  1PCZ A;  2G30 A;  2IV8 A;  1QN5 A;  4ROD B;  1QNC A;  1QNB A;  1KYD A;  4ROC B;  1VTL E;  1KY6 A;  2D0A A;  1W80 A;  3HS8 A;  5IYC P;  1CDW A;  5IYD P;  1VOK A;  2D0C A;  1B9K A;  1VTO A;  1D3U A;  3VN5 A;  1E42 A;  3H1Z A;  2D0B A;  3OCI A;  1QN9 A;  3HS9 A;  1QN7 A;  1QN3 A;  1QN6 A;  4B0A A;  1C9B B;  1PZD A;  1QN8 A;  1YTB A;  1TBP A;  1KYF A;  1KYU A;  3ASM A;  3EIK A;  1QTP A;  4ROE B;  4WZS D;  1RM1 A;  1VOL B;  1JFI C;  1R4X A;  2Z8U A;  1QNA A;  1TGH A;  1KY7 A;  4PY5 A;  1QNE A;  1MP9 A;  1NGM A;  2IV9 A; 
#chains in the Genus database with same CATH topology
 1TBA B;  5EPC A;  1AIS A;  1YTF A;  2YH5 A;  3OH9 A;  2G30 A;  2OOX A;  1KO9 A;  2ZFD B;  1QNC A;  4EJY A;  4BJU A;  4D7R A;  1KY6 A;  4IL8 A;  2HL9 A;  5IYC P;  4Q11 A;  1KFQ A;  2JHN A;  3D4V A;  4EAK A;  1N3C A;  1VOK A;  4I8O A;  1B9K A;  1WQA A;  2FKF A;  1LXT A;  1T6A A;  1PVS A;  3VN5 A;  1D3U A;  2QR1 A;  1KFI A;  1E42 A;  1QN9 A;  2QRC A;  3HS9 A;  4EAG A;  1LWY A;  1YTB A;  1PZD A;  3TE5 A;  3CWU A;  1QN8 A;  3OH6 A;  3ASM A;  1RM1 A;  2Y8L A;  1R4X A;  5KL0 A;  3T4N A;  3C04 A;  1QNA A;  1TGH A;  1C4G A;  2R5X A;  3ULX A;  3OST A;  1PCJ X;  4WX8 A;  1PCM X;  3CVT A;  2DKA A;  1EUV A;  1QTS A;  5IYB P;  1M3Q A;  2JPI A;  1NH2 A;  2H5A X;  1UT4 A;  1PCZ A;  2F7L A;  2Z0F A;  1M3H A;  3PMG A;  3PDK A;  3D7Q A;  5F9C A;  1KYD A;  2O3O A;  2MZ8 A;  2YA3 A;  1VTL E;  2QLV A;  3OSE A;  1K2Y X;  1W80 A;  2NOB A;  1CDW A;  2JOI A;  2V92 A;  2HL8 A;  3RPJ A;  4D7Q A;  1QN7 A;  2NOZ A;  1QN6 A;  2XHI A;  4EAJ A;  1XSZ A;  2OOY A;  2NOF A;  2DKC A;  1QTP A;  5HSH A;  4ROE B;  3CWT A;  2NWV A;  1LWW A;  1JFI C;  1VOL B;  2Z8U A;  5JN5 A;  4EJZ A;  3N89 A;  2FKM X;  2HKP A;  3KRM A;  4PY5 A;  5AN4 A;  1MP9 A;  4EAI A;  1VTO A;  2H4L X;  1FN7 A;  1NGM A;  3F0Z A;  2NLV A;  1N39 A;  1YQM A;  2Y8Q A;  2MJ7 A;  2VJ0 A;  3DPU A;  2IV8 A;  4MRQ A;  3NA5 A;  1QN5 A;  2NOL A;  5JMV D;  4ROC B;  2DKD A;  2D0A A;  3HS8 A;  5BMP A;  2HZM A;  1P5G X;  3F10 A;  1V5S A;  4EAL A;  1N3A A;  1EBM A;  5BMN A;  4TPS A;  3H1Z A;  3OCI A;  3CW7 A;  1QN3 A;  1WJW A;  1UT7 A;  3SNS A;  1Q9U A;  1TBP A;  2FGT A;  3EIK A;  4WZS D;  1UL7 A;  3ENC A;  4HJH A;  4C7P A;  1LWV A;  3OSM A;  3BKQ X;  3KTU A;  3CWS A;  3EAY A;  4DUL A;  2NOE A;  1YQK A;  1M5Q 1;  3OLP A;  2PWW A;  3I3W A;  3I0X A;  1NVP A;  2EHB D;  3OC3 C;  1YQR A;  1QN4 A;  4WXA A;  2FUV A;  4ROD B;  1YQL A;  1MPG A;  2HZS A;  1QNB A;  1P5D X;  3CVS A;  1TUO A;  2V8Q A;  2V9J A;  3I0W A;  5IYD P;  2NVM A;  2D0C A;  1HU0 A;  2NOI A;  2D0B A;  1J3M A;  4B0A A;  1K35 A;  2QRD A;  3ENO C;  1C9B B;  2I5W A;  4QG5 A;  2NOH A;  1C47 A;  1JDY A;  1KYF A;  1KYU A;  4CFF A;  2JHJ A;  3CWA A;  3DPT A;  1DIZ A;  2QRE A;  3OGD A;  2LAE A;  3RSM A;  1KY7 A;  3UW2 A;  3IH7 A;  1QNE A;  1VKL A;  2IV9 A;  3TDH A; 
#chains in the Genus database with same CATH homology
 1TBA B;  1AIS A;  1YTF A;  2YH5 A;  2G30 A;  1KO9 A;  1QNC A;  4EJY A;  1KY6 A;  5IYC P;  4Q11 A;  1N3C A;  1VOK A;  4I8O A;  1B9K A;  1D3U A;  3VN5 A;  1E42 A;  1QN9 A;  3HS9 A;  1LWY A;  1YTB A;  1PZD A;  1QN8 A;  3ASM A;  1RM1 A;  1R4X A;  1QNA A;  1TGH A;  3ULX A;  3OST A;  1QTS A;  1M3Q A;  5IYB P;  1NH2 A;  1UT4 A;  1PCZ A;  1M3H A;  1KYD A;  2O3O A;  2MZ8 A;  1VTL E;  1W80 A;  2NOB A;  1CDW A;  2JOI A;  3RPJ A;  2NOZ A;  1QN7 A;  1QN6 A;  2XHI A;  2NOF A;  1QTP A;  4ROE B;  1VOL B;  1LWW A;  1JFI C;  2Z8U A;  4EJZ A;  3N89 A;  3KRM A;  4PY5 A;  5AN4 A;  1MP9 A;  1VTO A;  1FN7 A;  3F0Z A;  1N39 A;  1YQM A;  2MJ7 A;  2VJ0 A;  3DPU A;  2IV8 A;  1QN5 A;  2NOL A;  4ROC B;  2D0A A;  3HS8 A;  2HZM A;  3F10 A;  1N3A A;  1EBM A;  4TPS A;  3H1Z A;  3OCI A;  1QN3 A;  1UT7 A;  3SNS A;  1TBP A;  2FGT A;  3EIK A;  4WZS D;  1LWV A;  3OSM A;  3KTU A;  4DUL A;  2NOE A;  1YQK A;  3I0X A;  1NVP A;  3OC3 C;  1YQR A;  1QN4 A;  4ROD B;  1YQL A;  2HZS A;  1QNB A;  3I0W A;  5IYD P;  2D0C A;  1HU0 A;  2NOI A;  2D0B A;  4B0A A;  1C9B B;  2NOH A;  2I5W A;  1KYF A;  1KYU A;  3DPT A;  2LAE A;  1KY7 A;  3IH7 A;  1QNE A;  1NGM A;  2IV9 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...