1QO6A

Solution structure of a pair of modules from the gelatin-binding domain of fibronectin
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
101
structure length
101
Chain Sequence
YGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYEQDQKYSFCTDHT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion protein
molecule keywords FIBRONECTIN
publication title Solution Structure of a Pair of Modules from the Gelatin-Binding Domain of Fibronectin
pubmed doi rcsb
source organism Homo sapiens
total genus 6
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 1999-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
A PF00040 fn2 Fibronectin type II domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 1qo6A02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1qo6A01
1SS2A 3SW0X 3ZRZA 1LY2A 2JRAA 5HZPB 3MQLA 3OEDC 2XWBF 3KZJA 3EJHA 1EAKA 1H2PP 1U5MA 3OP8A 4B2RA 1Z92B 1QGBA 1OJVA 2V8EA 4IGDA 1E88A 1VVDA 2YBYA 2XWJI 1CKLA 1QUBA 4AYIA 1CK7A 1FBRA 4DJZA 4ONTD 2RLQA 1GHQB 2CKUA 1PPQA 3R62A 3ZD2A 4K12A 4PZ5A 3OXUD 1C1ZA 3IX0A 2UWNA 2RLPA 1H03P 1SRZA 3IU3I 1OK2A 1PDCA 4AYDA 2XQWC 1GKGA 3INBC 2IZ3A 5I0QB 3CALA 1OK3A 2RKZA 2MCYA 4F4OC 1TPGA 4J38B 3GOVA 4ZH1D 1TPNA 2W80A 2LOJA 3O8EB 4WJG2 5HYTB 1GPZA 2KRIA 4A5WB 1OJYA 2EHFA 2A55A 1E8BA 1Q3XA 2B5ID 1ELVA 2V5OA 1H04P 4YNXA 3GXEA 4AYMA 1QO6A 2XRBA 1J7MA 1UOTP 3NFPI 3L89M 5JPMG 4LOSA 2O39C 2XRDA 4CSYA 4C16A 2BZMA 2JGXA 1E5GA 1MD8A 4JHSA 3M7PA 5HYPA 3ERBA 1OK1A 1ZJKA 1GXDA 2FN2A 1HFHA 2RKYA 1G4FA 2RL0A 1MD7A 3RJ3D 2ERJA 2JGWA 1O9AA 2YRAA 5FO8C 1GKNA 2IZ4A 1G4GA 2CG7A 3ZD1A 1HCCA 4MUCA 4AYEA 5HYUB 4KKDA 2KMSA 3KXVA 1L6JA 1HFIA 2W81A 3T5OA 2WIIC 2CG6A 1TPMA 1KS0A 2G7IA 1CXWA 2MCZA 1H8PA 1H2QP 2EC3A 1NWVA 4B2SA 1OJWA 1OK9A 3TVJA 4LOTA 1VVCA 2QY0A 4FXGG
chains in the Genus database with same CATH superfamily
1SS2A 3SW0X 4NYUA 3CI0J 3ZRZA 2D49A 4Z2IA 1VVCA 2X2ZA 4OJPA 2Y8SA 1AIWA 4LG2A 1LY2A 4Z2LA 2JRAA 1YU2A 5HZPB 3MQLA 3OEDC 2Y2JA 1OGGA 4HMEA 2XWBF 3KZJA 4OUIA 3EJHA 4GHLA 1EAKA 3HONA 1H2PP 1U5MA 3OP8A 3L27A 1Z92B 1H0GA 4B2RA 1QGBA 3L26A 4MSLA 4MB4A 3WD1A 4N7EA 4PO7A 3KS4A 4NY2A 4NYYA 1ED7A 1OJVA 2V8EA 3K3TA 4QNLA 1E88A 2Y2LA 1VVDA 2YBYA 1E6ZA 2XWJI 1CKLA 2UWXA 1W1TA 1QUBA 1CK7A 1FBRA 4AYIA 4DJZA 4ONTD 4IBFA 2Y2QA 2RLQA 2IOUA 3KS8A 1GHQB 2CKUA 1PPQA 3L25A 3WD2A 3R62A 3ZD2A 4K12A 1UR9A 2Y8TA 4PZ5A 4NZ5A 4OJ6A 3OXUD 3WSXA 1C1ZA 3IX0A 2JCHA 3WSYA 3FGTA 2UWNA 2RLPA 1H03P 4IJFA 1SRZA 4OJ5A 4NZ1A 2Y8RA 3IU3I 3VWOA 4IBCA 1OK2A 3WD0A 1PDCA 1O6IA 4AYDA 2XQWC 1GKGA 3INBC 4Z2JA 2IZ3A 5I0QB 3CALA 2Y2KA 1OK3A 2MCYA 2RKZA 4F4OC 4NZ4A 1TPGA 2JE5A 1E6RA 1W1PA 1RLHA 2XD1A 4IBIA 3WD4A 3GOVA 4J38B 4Z2KA 1TPNA 3NJAA 2Y2GA 4ZH1D 2W80A 1YU0A 2Y2NA 4TX8A 2LOJA 3F6KA 3O8EB 1YU4A 2Y2PA 4IBJA 4WJG2 5HYTB 1E6NA 3ZLDA 1W1YA 3FKEA 2ZYCA 1GPZA 2KRIA 4A5WB 1YUEA 4IBBA 3L2AA 1OJYA 2EHFA 2A55A 1E8BA 1Q3XA 2B5ID 3FGRA 1ELVA 2V5OA 1H04P 4APLA 4YNXA 3GXEA 2XD5A 4GH9A 2Y2MA 4AYMA 1GOIA 1QO6A 2XRBA 1J7MA 1YU1A 3L29A 1UOTP 3NFPI 5DN4A 3L89M 5JPMG 4LOSA 2O39C 2XRDA 4IJEA 4CSYA 3L28A 4IGDA 4C16A 2BZMA 2JGXA 4IBDA 4OJOA 4Z2HA 1MD8A 4JHSA 5DN5A 1E5GA 3M7PA 2FFFB 5HYPA 3N3FA 2RTSA 3ZLEA 3ERBA 4IBGA 1OK1A 4MB5A 1ZJKA 1GXDA 1GPFA 2FN2A 1HFHA 2RKYA 1W1VA 1G4FA 2RL0A 1MD7A 3RJ3D 4HMCA 1E15A 1E6PA 2ERJA 3HSHA 2JGWA 1O9AA 2YRAA 5FO8C 5BPVA 1GKNA 2IZ4A 1G4GA 2CG7A 3ZD1A 1HCCA 4IBEA 4MUCA 4AYEA 4KKDA 2KMSA 3KXVA 5HYUB 1L6JA 4NZ3A 2Y2IA 2Y2HA 1HFIA 2W81A 3T5OA 2WIIC 4Z2GA 2BG1A 4OJLA 1TPMA 2CG6A 2I2LA 1H0IA 3WD3A 4YIZA 1KS0A 2G7IA 1CXWA 2MCZA 1H8PA 4HMDA 1H2QP 1YU3A 1UR8A 2EC3A 4MB3A 1NWVA 4B2SA 4BWCA 4GHAA 1OGBA 1OJWA 1OK9A 2Y2OA 4IBKA 3TVJA 4LOTA 3WX7A 2QY0A 4FXGG
chains in the Genus database with same CATH topology
1SS2A 3SW0X 3ZRZA 1LY2A 2JRAA 5HZPB 3MQLA 3OEDC 2XWBF 3KZJA 3EJHA 1EAKA 1H2PP 1U5MA 3OP8A 4B2RA 1Z92B 1QGBA 1OJVA 2V8EA 4IGDA 1E88A 1VVDA 2YBYA 2XWJI 1CKLA 1QUBA 4AYIA 1CK7A 1FBRA 4DJZA 4ONTD 2RLQA 1GHQB 2CKUA 1PPQA 3R62A 3ZD2A 4K12A 4PZ5A 3OXUD 1C1ZA 3IX0A 2UWNA 2RLPA 1H03P 1SRZA 3IU3I 1OK2A 1PDCA 4AYDA 2XQWC 1GKGA 3INBC 2IZ3A 5I0QB 3CALA 1OK3A 2RKZA 2MCYA 4F4OC 1TPGA 4J38B 3GOVA 4ZH1D 1TPNA 2W80A 2LOJA 3O8EB 4WJG2 5HYTB 1GPZA 2KRIA 4A5WB 1OJYA 2EHFA 2A55A 1E8BA 1Q3XA 2B5ID 1ELVA 2V5OA 1H04P 4YNXA 3GXEA 4AYMA 1QO6A 2XRBA 1J7MA 1UOTP 3NFPI 3L89M 5JPMG 4LOSA 2O39C 2XRDA 4CSYA 4C16A 2BZMA 2JGXA 1E5GA 1MD8A 4JHSA 3M7PA 5HYPA 3ERBA 1OK1A 1ZJKA 1GXDA 2FN2A 1HFHA 2RKYA 1G4FA 2RL0A 1MD7A 3RJ3D 2ERJA 2JGWA 1O9AA 2YRAA 5FO8C 1GKNA 2IZ4A 1G4GA 2CG7A 3ZD1A 1HCCA 4MUCA 4AYEA 5HYUB 4KKDA 2KMSA 3KXVA 1L6JA 1HFIA 2W81A 3T5OA 2WIIC 2CG6A 1TPMA 1KS0A 2G7IA 1CXWA 2MCZA 1H8PA 1H2QP 2EC3A 1NWVA 4B2SA 1OJWA 1OK9A 3TVJA 4LOTA 1VVCA 2QY0A 4FXGG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SS2 A;  3SW0 X;  3ZRZ A;  1LY2 A;  2JRA A;  5HZP B;  3MQL A;  3OED C;  2XWB F;  3KZJ A;  3EJH A;  1EAK A;  1H2P P;  1U5M A;  3OP8 A;  4B2R A;  1Z92 B;  1QGB A;  1OJV A;  2V8E A;  4IGD A;  1E88 A;  1VVD A;  2YBY A;  2XWJ I;  1CKL A;  1QUB A;  4AYI A;  1CK7 A;  1FBR A;  4DJZ A;  4ONT D;  2RLQ A;  1GHQ B;  2CKU A;  1PPQ A;  3R62 A;  3ZD2 A;  4K12 A;  4PZ5 A;  3OXU D;  1C1Z A;  3IX0 A;  2UWN A;  2RLP A;  1H03 P;  1SRZ A;  3IU3 I;  1OK2 A;  1PDC A;  4AYD A;  2XQW C;  1GKG A;  3INB C;  2IZ3 A;  5I0Q B;  3CAL A;  1OK3 A;  2RKZ A;  2MCY A;  4F4O C;  1TPG A;  4J38 B;  3GOV A;  4ZH1 D;  1TPN A;  2W80 A;  2LOJ A;  3O8E B;  4WJG 2;  5HYT B;  1GPZ A;  2KRI A;  4A5W B;  1OJY A;  2EHF A;  2A55 A;  1E8B A;  1Q3X A;  2B5I D;  1ELV A;  2V5O A;  1H04 P;  4YNX A;  3GXE A;  4AYM A;  1QO6 A;  2XRB A;  1J7M A;  1UOT P;  3NFP I;  3L89 M;  5JPM G;  4LOS A;  2O39 C;  2XRD A;  4CSY A;  4C16 A;  2BZM A;  2JGX A;  1E5G A;  1MD8 A;  4JHS A;  3M7P A;  5HYP A;  3ERB A;  1OK1 A;  1ZJK A;  1GXD A;  2FN2 A;  1HFH A;  2RKY A;  1G4F A;  2RL0 A;  1MD7 A;  3RJ3 D;  2ERJ A;  2JGW A;  1O9A A;  2YRA A;  5FO8 C;  1GKN A;  2IZ4 A;  1G4G A;  2CG7 A;  3ZD1 A;  1HCC A;  4MUC A;  4AYE A;  5HYU B;  4KKD A;  2KMS A;  3KXV A;  1L6J A;  1HFI A;  2W81 A;  3T5O A;  2WII C;  2CG6 A;  1TPM A;  1KS0 A;  2G7I A;  1CXW A;  2MCZ A;  1H8P A;  1H2Q P;  2EC3 A;  1NWV A;  4B2S A;  1OJW A;  1OK9 A;  3TVJ A;  4LOT A;  1VVC A;  2QY0 A;  4FXG G; 
#chains in the Genus database with same CATH topology
 1SS2 A;  3SW0 X;  4NYU A;  3CI0 J;  3ZRZ A;  2D49 A;  4Z2I A;  1VVC A;  2X2Z A;  4OJP A;  2Y8S A;  1AIW A;  4LG2 A;  1LY2 A;  4Z2L A;  2JRA A;  1YU2 A;  5HZP B;  3MQL A;  3OED C;  2Y2J A;  1OGG A;  4HME A;  2XWB F;  3KZJ A;  4OUI A;  3EJH A;  4GHL A;  1EAK A;  3HON A;  1H2P P;  1U5M A;  3OP8 A;  3L27 A;  1Z92 B;  1H0G A;  4B2R A;  1QGB A;  3L26 A;  4MSL A;  4MB4 A;  3WD1 A;  4N7E A;  4PO7 A;  3KS4 A;  4NY2 A;  4NYY A;  1ED7 A;  1OJV A;  2V8E A;  3K3T A;  4QNL A;  1E88 A;  2Y2L A;  1VVD A;  2YBY A;  1E6Z A;  2XWJ I;  1CKL A;  2UWX A;  1W1T A;  1QUB A;  1CK7 A;  1FBR A;  4AYI A;  4DJZ A;  4ONT D;  4IBF A;  2Y2Q A;  2RLQ A;  2IOU A;  3KS8 A;  1GHQ B;  2CKU A;  1PPQ A;  3L25 A;  3WD2 A;  3R62 A;  3ZD2 A;  4K12 A;  1UR9 A;  2Y8T A;  4PZ5 A;  4NZ5 A;  4OJ6 A;  3OXU D;  3WSX A;  1C1Z A;  3IX0 A;  2JCH A;  3WSY A;  3FGT A;  2UWN A;  2RLP A;  1H03 P;  4IJF A;  1SRZ A;  4OJ5 A;  4NZ1 A;  2Y8R A;  3IU3 I;  3VWO A;  4IBC A;  1OK2 A;  3WD0 A;  1PDC A;  1O6I A;  4AYD A;  2XQW C;  1GKG A;  3INB C;  4Z2J A;  2IZ3 A;  5I0Q B;  3CAL A;  2Y2K A;  1OK3 A;  2MCY A;  2RKZ A;  4F4O C;  4NZ4 A;  1TPG A;  2JE5 A;  1E6R A;  1W1P A;  1RLH A;  2XD1 A;  4IBI A;  3WD4 A;  3GOV A;  4J38 B;  4Z2K A;  1TPN A;  3NJA A;  2Y2G A;  4ZH1 D;  2W80 A;  1YU0 A;  2Y2N A;  4TX8 A;  2LOJ A;  3F6K A;  3O8E B;  1YU4 A;  2Y2P A;  4IBJ A;  4WJG 2;  5HYT B;  1E6N A;  3ZLD A;  1W1Y A;  3FKE A;  2ZYC A;  1GPZ A;  2KRI A;  4A5W B;  1YUE A;  4IBB A;  3L2A A;  1OJY A;  2EHF A;  2A55 A;  1E8B A;  1Q3X A;  2B5I D;  3FGR A;  1ELV A;  2V5O A;  1H04 P;  4APL A;  4YNX A;  3GXE A;  2XD5 A;  4GH9 A;  2Y2M A;  4AYM A;  1GOI A;  1QO6 A;  2XRB A;  1J7M A;  1YU1 A;  3L29 A;  1UOT P;  3NFP I;  5DN4 A;  3L89 M;  5JPM G;  4LOS A;  2O39 C;  2XRD A;  4IJE A;  4CSY A;  3L28 A;  4IGD A;  4C16 A;  2BZM A;  2JGX A;  4IBD A;  4OJO A;  4Z2H A;  1MD8 A;  4JHS A;  5DN5 A;  1E5G A;  3M7P A;  2FFF B;  5HYP A;  3N3F A;  2RTS A;  3ZLE A;  3ERB A;  4IBG A;  1OK1 A;  4MB5 A;  1ZJK A;  1GXD A;  1GPF A;  2FN2 A;  1HFH A;  2RKY A;  1W1V A;  1G4F A;  2RL0 A;  1MD7 A;  3RJ3 D;  4HMC A;  1E15 A;  1E6P A;  2ERJ A;  3HSH A;  2JGW A;  1O9A A;  2YRA A;  5FO8 C;  5BPV A;  1GKN A;  2IZ4 A;  1G4G A;  2CG7 A;  3ZD1 A;  1HCC A;  4IBE A;  4MUC A;  4AYE A;  4KKD A;  2KMS A;  3KXV A;  5HYU B;  1L6J A;  4NZ3 A;  2Y2I A;  2Y2H A;  1HFI A;  2W81 A;  3T5O A;  2WII C;  4Z2G A;  2BG1 A;  4OJL A;  1TPM A;  2CG6 A;  2I2L A;  1H0I A;  3WD3 A;  4YIZ A;  1KS0 A;  2G7I A;  1CXW A;  2MCZ A;  1H8P A;  4HMD A;  1H2Q P;  1YU3 A;  1UR8 A;  2EC3 A;  4MB3 A;  1NWV A;  4B2S A;  4BWC A;  4GHA A;  1OGB A;  1OJW A;  1OK9 A;  2Y2O A;  4IBK A;  3TVJ A;  4LOT A;  3WX7 A;  2QY0 A;  4FXG G; 
#chains in the Genus database with same CATH homology
 1SS2 A;  3SW0 X;  3ZRZ A;  1LY2 A;  2JRA A;  5HZP B;  3MQL A;  3OED C;  2XWB F;  3KZJ A;  3EJH A;  1EAK A;  1H2P P;  1U5M A;  3OP8 A;  4B2R A;  1Z92 B;  1QGB A;  1OJV A;  2V8E A;  4IGD A;  1E88 A;  1VVD A;  2YBY A;  2XWJ I;  1CKL A;  1QUB A;  4AYI A;  1CK7 A;  1FBR A;  4DJZ A;  4ONT D;  2RLQ A;  1GHQ B;  2CKU A;  1PPQ A;  3R62 A;  3ZD2 A;  4K12 A;  4PZ5 A;  3OXU D;  1C1Z A;  3IX0 A;  2UWN A;  2RLP A;  1H03 P;  1SRZ A;  3IU3 I;  1OK2 A;  1PDC A;  4AYD A;  2XQW C;  1GKG A;  3INB C;  2IZ3 A;  5I0Q B;  3CAL A;  1OK3 A;  2RKZ A;  2MCY A;  4F4O C;  1TPG A;  4J38 B;  3GOV A;  4ZH1 D;  1TPN A;  2W80 A;  2LOJ A;  3O8E B;  4WJG 2;  5HYT B;  1GPZ A;  2KRI A;  4A5W B;  1OJY A;  2EHF A;  2A55 A;  1E8B A;  1Q3X A;  2B5I D;  1ELV A;  2V5O A;  1H04 P;  4YNX A;  3GXE A;  4AYM A;  1QO6 A;  2XRB A;  1J7M A;  1UOT P;  3NFP I;  3L89 M;  5JPM G;  4LOS A;  2O39 C;  2XRD A;  4CSY A;  4C16 A;  2BZM A;  2JGX A;  1E5G A;  1MD8 A;  4JHS A;  3M7P A;  5HYP A;  3ERB A;  1OK1 A;  1ZJK A;  1GXD A;  2FN2 A;  1HFH A;  2RKY A;  1G4F A;  2RL0 A;  1MD7 A;  3RJ3 D;  2ERJ A;  2JGW A;  1O9A A;  2YRA A;  5FO8 C;  1GKN A;  2IZ4 A;  1G4G A;  2CG7 A;  3ZD1 A;  1HCC A;  4MUC A;  4AYE A;  5HYU B;  4KKD A;  2KMS A;  3KXV A;  1L6J A;  1HFI A;  2W81 A;  3T5O A;  2WII C;  2CG6 A;  1TPM A;  1KS0 A;  2G7I A;  1CXW A;  2MCZ A;  1H8P A;  1H2Q P;  2EC3 A;  1NWV A;  4B2S A;  1OJW A;  1OK9 A;  3TVJ A;  4LOT A;  1VVC A;  2QY0 A;  4FXG G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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