1QP9A

Structure of hap1-pc7 complexed to the uas of cyc7
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
76
structure length
76
Chain Sequence
RKRNRIPLGCTICRKRKVKCDKLRPHCQQCTKTGVAHLCHYMEQTWAEEAEKELLKDNELKKLRERVKSLEKTLSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of HAP1-PC7 bound to DNA: implications for DNA recognition and allosteric effects of DNA-binding on transcriptional activation.
pubmed doi rcsb
molecule tags Transcription/dna
source organism Saccharomyces cerevisiae
molecule keywords DNA (5'-D(*AP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*T
total genus 22
structure length 76
sequence length 76
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1999-06-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.240.10 Few Secondary Structures Irregular CD2-Gal4 Zn(2)-C6 fungal-type DNA-binding domain 1qp9A01
1F4SP 1ZMEC 1F5EP 1AJYA 1PYCA 2ALCA 2ERGA 1PYIA 2EREA 3COQA 1QP9A 2HAPC 3ALCA 1D66A 1AW6A 2ER8A 1HWTC
chains in the Genus database with same CATH superfamily
1F4SP 1ZMEC 1F5EP 1AJYA 1PYCA 2ALCA 2ERGA 1PYIA 2EREA 3COQA 1QP9A 2HAPC 3ALCA 1D66A 1AW6A 2ER8A 1HWTC
chains in the Genus database with same CATH topology
1F4SP 1ZMEC 1F5EP 1AJYA 1PYCA 2ALCA 2ERGA 1PYIA 2EREA 3COQA 1QP9A 2HAPC 3ALCA 1D66A 1AW6A 2ER8A 1HWTC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F4S P;  1ZME C;  1F5E P;  1AJY A;  1PYC A;  2ALC A;  2ERG A;  1PYI A;  2ERE A;  3COQ A;  1QP9 A;  2HAP C;  3ALC A;  1D66 A;  1AW6 A;  2ER8 A;  1HWT C; 
#chains in the Genus database with same CATH topology
 1F4S P;  1ZME C;  1F5E P;  1AJY A;  1PYC A;  2ALC A;  2ERG A;  1PYI A;  2ERE A;  3COQ A;  1QP9 A;  2HAP C;  3ALC A;  1D66 A;  1AW6 A;  2ER8 A;  1HWT C; 
#chains in the Genus database with same CATH homology
 1F4S P;  1ZME C;  1F5E P;  1AJY A;  1PYC A;  2ALC A;  2ERG A;  1PYI A;  2ERE A;  3COQ A;  1QP9 A;  2HAP C;  3ALC A;  1D66 A;  1AW6 A;  2ER8 A;  1HWT C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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