1QQHA

2.1 a crystal structure of the human papillomavirus type 18 e2 activation domain
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
144
structure length
144
Chain Sequence
KSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKGGQTVQVYFDGNKDNCMTYVAWDSVYYMTDAGTWDKTATCVSHRGLYYVKEGYNTFYIEFKSECEKYGNTGTWEVHFGNNVIDCNDSMCSTSDDTVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords PAPILLOMAVIRUS TRANSCRIPTION FACTOR E2
publication title Crystal structure of the human papillomavirus type 18 E2 activation domain.
pubmed doi rcsb
source organism Human papillomavirus type 18
total genus 34
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 1999-06-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.200.10 Mainly Beta Beta Complex Regulatory Protein E2; Chain: A; Domain 2 Regulatory Protein E2; Chain: A; Domain 2 1qqhA00
1QQHA 2NNUA 1R6KA 2JEXA 2JEUA 1DTOA 1TUEB 1R6NA
chains in the Genus database with same CATH superfamily
1QQHA 2NNUA 1R6KA 2JEXA 2JEUA 1DTOA 1TUEB 1R6NA
chains in the Genus database with same CATH topology
1QQHA 2NNUA 1R6KA 2JEXA 2JEUA 1DTOA 1TUEB 1R6NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QQH A;  2NNU A;  1R6K A;  2JEX A;  2JEU A;  1DTO A;  1TUE B;  1R6N A; 
#chains in the Genus database with same CATH topology
 1QQH A;  2NNU A;  1R6K A;  2JEX A;  2JEU A;  1DTO A;  1TUE B;  1R6N A; 
#chains in the Genus database with same CATH homology
 1QQH A;  2NNU A;  1R6K A;  2JEX A;  2JEU A;  1DTO A;  1TUE B;  1R6N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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