The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
75
|
sequence length |
209
|
structure length |
209
|
Chain Sequence |
VDEFSNIRENPVTPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTIPDGRYIPAGMVVTSQAEADKLPEVTDDYAYSHTNEAVVYVNVHLAEGYKETS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A closer look at the active site of gamma-class carbonic anhydrases: high-resolution crystallographic studies of the carbonic anhydrase from Methanosarcina thermophila.
pubmed doi rcsb |
| molecule keywords |
CARBONIC ANHYDRASE
|
| molecule tags |
Lyase
|
| source organism |
Methanosarcina thermophila
|
| total genus |
75
|
| structure length |
209
|
| sequence length |
209
|
| ec nomenclature |
ec
4.2.1.1: Carbonic anhydrase. |
| pdb deposition date | 1999-06-15 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00132 | Hexapep | Bacterial transferase hexapeptide (six repeats) |
| A | PF14602 | Hexapep_2 | Hexapeptide repeat of succinyl-transferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | UDP N-Acetylglucosamine Acyltransferase; domain 1 | Hexapeptide repeat proteins |
#chains in the Genus database with same CATH superfamily 1YP3 A; 3R0S A; 1HM8 A; 3MQH A; 3TV0 A; 2V0J A; 4KPZ A; 3DJ4 A; 2OEF A; 1QRG A; 4EA8 A; 2OI5 A; 3I3A A; 2IC7 A; 2FKO A; 4E75 A; 1KK4 A; 5L6V A; 3KWC A; 1KK5 A; 1YP2 A; 3R3R A; 3I3X A; 1QRM A; 3TWD A; 1HV9 A; 3VBJ A; 3FOQ A; 4E79 A; 1FWY A; 2QIA A; 2AQ9 A; 3VBN A; 3OW5 A; 3FSC A; 3VBP A; 2WLC A; 3EEV A; 4EAB A; 1G95 A; 3KWE A; 3OU9 A; 1KK6 A; 5DEM A; 3FWW A; 1QRE A; 4J09 A; 2ICY A; 3R1W A; 3R5D A; 5E3R A; 4IHG A; 4M2B A; 4HZD A; 1XHD A; 1QRF A; 3T57 A; 4M28 A; 4EGG A; 3P47 A; 4H7O A; 2P2O A; 3HJJ A; 4HUR A; 3DHO A; 4HZC A; 2QIV X; 2JF2 A; 2V0H A; 4KNX A; 4G3S A; 3IGJ A; 1SST A; 3OTM A; 4AC3 A; 1LXA A; 1Z90 A; 2XAT A; 4M98 A; 4N6A A; 1MRL A; 3OTZ A; 1KRV A; 1KGT A; 3JQY A; 3ST8 A; 4DCL A; 5DEP A; 3FS8 A; 3R5A A; 1V67 A; 1MR7 A; 3EG4 A; 4N27 A; 1XAT A; 4AA7 A; 1KHR A; 3BXY A; 1SSM A; 4KQL A; 1KRR A; 3PMO A; 3GUE A; 3VBL A; 3OUP A; 2WLE A; 1YP4 A; 1KQA A; 3TDT A; 1KRU A; 1MR9 A; 3FSY A; 4G3Q A; 3GOS A; 4J18 A; 4MFG A; 3TK8 A; 3D8V A; 3KWD A; 2WLD A; 3EH0 A; 3C8V A; 5E3P A; 4FCE A; 1QQ0 A; 4KPX A; 2W0V A; 5U2K A; 3SRT A; 4E6U A; 2RIJ A; 3TIO A; 3TIS A; 2NPO A; 1TDT A; 4IHF A; 4N69 A; 1SSQ A; 4R36 A; 2GGQ A; 3ECT A; 1HM9 A; 4KNR A; 4R37 A; 2V0K A; 1THJ A; 3DK5 A; 1G97 A; 2ICX A; 3MQG A; 4EA7 A; 3HSQ A; 3R5B A; 4M99 A; 5L6S A; 2JF3 A; 2VHE A; 2GGO A; 4MYO A; 3MC4 A; 4HCQ A; 4R7P A; 4HUS A; 3VNP A; 4AAW A; 3VBM A; 3R8Y A; 4EA9 A; 3SPT A; 3R3I A; 2OI7 A; 2TDT A; 4IHH A; 5AFU U; 1S80 A; 2W0W A; 3BFP A; 4ISX A; 2I5K A; 3R5C A; 4K6R A; 4MZU A; 4E1K A; 1QRL A; 3R2W A; 1HM0 A; 1V3W A; 3V4E A; 2OI6 A; 2V0L A; 4G87 A; 5E3Q A; 3D98 A; 4M9C A; 2OEG A; 3BSW A; 2IUA A; 3BSY A; 4M2A A; 3GVD A; 2WLG A; 5F42 A; 3BRK X; 2Q4J A; 2VD4 A; 1KGQ A; 2QKX A; 3FSB A; 3P1B A; 2IU9 A; 2V0I A; 1OCX A; 4EQY A; 5AFU V; 2IU8 A; 4G3P A; 3VBK A; 3Q1X A; 4EAA A; 4N6B A; 4E6T A; 3IXC A; 5ADX V; 3F1X A; 3CJ8 A; 1J2Z A; 1FXJ A; 1T3D A; 3FTT A; 3NZ2 A; 3FSX A; 5ADX U; 2WLF A; 5DG3 A; 3VBI A; 3BSS A; #chains in the Genus database with same CATH topology 1YP3 A; 3R0S A; 1HM8 A; 3MQH A; 3TV0 A; 2V0J A; 4KPZ A; 3DJ4 A; 2OEF A; 1QRG A; 4EA8 A; 2OI5 A; 3I3A A; 2IC7 A; 2FKO A; 4E75 A; 1KK4 A; 5L6V A; 3KWC A; 1KK5 A; 1L0S A; 1YP2 A; 3R3R A; 3I3X A; 1QRM A; 3TWD A; 1HV9 A; 3VBJ A; 3FOQ A; 4E79 A; 1EWW A; 1FWY A; 2QIA A; 2AQ9 A; 3VBN A; 3OW5 A; 3FSC A; 3VBP A; 3GQ9 A; 2WLC A; 3EEV A; 4EAB A; 1G95 A; 3KWE A; 3OU9 A; 1KK6 A; 5DEM A; 3FWW A; 1QRE A; 4J09 A; 2ICY A; 3R1W A; 3R5D A; 5E3R A; 4IHG A; 4M2B A; 4HZD A; 1XHD A; 1QRF A; 3T57 A; 3OH0 A; 4M28 A; 4EGG A; 3P47 A; 4H7O A; 2P2O A; 3HJJ A; 4HUR A; 3OH1 A; 3DHO A; 4HZC A; 2QIV X; 2JF2 A; 2V0H A; 4KNX A; 4G3S A; 3IGJ A; 1SST A; 3OTM A; 4AC3 A; 1LXA A; 1Z90 A; 2XAT A; 4M98 A; 4N6A A; 1MRL A; 3OTZ A; 1KRV A; 1KGT A; 3JQY A; 3ST8 A; 4DCL A; 5DEP A; 3FS8 A; 3R5A A; 1V67 A; 1MR7 A; 3EG4 A; 4N27 A; 1XAT A; 4AA7 A; 1KHR A; 3GQ7 A; 3BXY A; 1SSM A; 4KQL A; 1KRR A; 3PMO A; 3GUE A; 3VBL A; 3OUP A; 2WLE A; 1YP4 A; 1KQA A; 3TDT A; 1KRU A; 1MR9 A; 3FSY A; 4G3Q A; 3GOS A; 4J18 A; 4MFG A; 3TK8 A; 3D8V A; 3KWD A; 2WLD A; 3EH0 A; 3C8V A; 5E3P A; 4FCE A; 1QQ0 A; 4KPX A; 2W0V A; 5U2K A; 3SRT A; 4E6U A; 2RIJ A; 3TIO A; 3TIS A; 3OH4 A; 2NPO A; 1TDT A; 4IHF A; 4N69 A; 1SSQ A; 4R36 A; 2GGQ A; 3ECT A; 1HM9 A; 4KNR A; 4R37 A; 2V0K A; 1THJ A; 3DK5 A; 1G97 A; 2ICX A; 3MQG A; 4EA7 A; 3HSQ A; 3R5B A; 4M99 A; 5L6S A; 2JF3 A; 2VHE A; 2GGO A; 4MYO A; 3MC4 A; 4HCQ A; 4R7P A; 3SUC A; 4HUS A; 3VNP A; 1Z2F A; 4AAW A; 3VBM A; 3R8Y A; 4EA9 A; 3SPT A; 3R3I A; 2OI7 A; 2TDT A; 4IHH A; 5AFU U; 1S80 A; 1N4I A; 2W0W A; 3BFP A; 3OH3 A; 4ISX A; 2I5K A; 3R5C A; 4K6R A; 4MZU A; 4E1K A; 1QRL A; 3R2W A; 1HM0 A; 1V3W A; 3V4E A; 3OGZ A; 2OI6 A; 2V0L A; 4G87 A; 5E3Q A; 3D98 A; 4M9C A; 2OEG A; 3BSW A; 2IUA A; 3BSY A; 4M2A A; 3GVD A; 1M8N A; 2WLG A; 5F42 A; 3BRK X; 2Q4J A; 2VD4 A; 1KGQ A; 2QKX A; 3FSB A; 3P1B A; 2IU9 A; 2V0I A; 1OCX A; 4EQY A; 5AFU V; 2IU8 A; 4G3P A; 3VBK A; 3Q1X A; 4EAA A; 4N6B A; 4E6T A; 3IXC A; 5ADX V; 3F1X A; 3CJ8 A; 3GQ8 A; 1J2Z A; 1FXJ A; 1T3D A; 3FTT A; 3NZ2 A; 3OH2 A; 3FSX A; 5ADX U; 3GQA A; 2WLF A; 5DG3 A; 3VBI A; 3BSS A; #chains in the Genus database with same CATH homology 1YP3 A; 3R0S A; 1HM8 A; 3MQH A; 3TV0 A; 2V0J A; 4KPZ A; 3DJ4 A; 2OEF A; 1QRG A; 4EA8 A; 2OI5 A; 3I3A A; 2IC7 A; 2FKO A; 4E75 A; 1KK4 A; 5L6V A; 3KWC A; 1KK5 A; 1YP2 A; 3R3R A; 3I3X A; 1QRM A; 3TWD A; 1HV9 A; 3VBJ A; 3FOQ A; 4E79 A; 1FWY A; 2QIA A; 2AQ9 A; 3VBN A; 3OW5 A; 3FSC A; 3VBP A; 2WLC A; 3EEV A; 4EAB A; 1G95 A; 3KWE A; 3OU9 A; 1KK6 A; 5DEM A; 3FWW A; 1QRE A; 4J09 A; 2ICY A; 3R1W A; 3R5D A; 5E3R A; 4IHG A; 4M2B A; 4HZD A; 1XHD A; 1QRF A; 3T57 A; 4M28 A; 4EGG A; 3P47 A; 4H7O A; 2P2O A; 3HJJ A; 4HUR A; 3DHO A; 4HZC A; 2QIV X; 2JF2 A; 2V0H A; 4KNX A; 4G3S A; 3IGJ A; 1SST A; 3OTM A; 4AC3 A; 1LXA A; 1Z90 A; 2XAT A; 4M98 A; 4N6A A; 1MRL A; 3OTZ A; 1KRV A; 1KGT A; 3JQY A; 3ST8 A; 4DCL A; 5DEP A; 3FS8 A; 3R5A A; 1V67 A; 1MR7 A; 3EG4 A; 4N27 A; 1XAT A; 4AA7 A; 1KHR A; 3BXY A; 1SSM A; 4KQL A; 1KRR A; 3PMO A; 3GUE A; 3VBL A; 3OUP A; 2WLE A; 1YP4 A; 1KQA A; 3TDT A; 1KRU A; 1MR9 A; 3FSY A; 4G3Q A; 3GOS A; 4J18 A; 4MFG A; 3TK8 A; 3D8V A; 3KWD A; 2WLD A; 3EH0 A; 3C8V A; 5E3P A; 4FCE A; 1QQ0 A; 4KPX A; 2W0V A; 5U2K A; 3SRT A; 4E6U A; 2RIJ A; 3TIO A; 3TIS A; 2NPO A; 1TDT A; 4IHF A; 4N69 A; 1SSQ A; 4R36 A; 2GGQ A; 3ECT A; 1HM9 A; 4KNR A; 4R37 A; 2V0K A; 1THJ A; 3DK5 A; 1G97 A; 2ICX A; 3MQG A; 4EA7 A; 3HSQ A; 3R5B A; 4M99 A; 5L6S A; 2JF3 A; 2VHE A; 2GGO A; 4MYO A; 3MC4 A; 4HCQ A; 4R7P A; 4HUS A; 3VNP A; 4AAW A; 3VBM A; 3R8Y A; 4EA9 A; 3SPT A; 3R3I A; 2OI7 A; 2TDT A; 4IHH A; 5AFU U; 1S80 A; 2W0W A; 3BFP A; 4ISX A; 2I5K A; 3R5C A; 4K6R A; 4MZU A; 4E1K A; 1QRL A; 3R2W A; 1HM0 A; 1V3W A; 3V4E A; 2OI6 A; 2V0L A; 4G87 A; 5E3Q A; 3D98 A; 4M9C A; 2OEG A; 3BSW A; 2IUA A; 3BSY A; 4M2A A; 3GVD A; 2WLG A; 5F42 A; 3BRK X; 2Q4J A; 2VD4 A; 1KGQ A; 2QKX A; 3FSB A; 3P1B A; 2IU9 A; 2V0I A; 1OCX A; 4EQY A; 5AFU V; 2IU8 A; 4G3P A; 3VBK A; 3Q1X A; 4EAA A; 4N6B A; 4E6T A; 3IXC A; 5ADX V; 3F1X A; 3CJ8 A; 1J2Z A; 1FXJ A; 1T3D A; 3FTT A; 3NZ2 A; 3FSX A; 5ADX U; 2WLF A; 5DG3 A; 3VBI A; 3BSS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
