1QS2A

Crystal structure of vip2 with nad
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
401
structure length
401
Chain Sequence
KVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSNSIITYKNVEPTTIGFNKSLTEGNTINSDAMAQFKEQFLDRDIKFDSYLDTHLTAQQVSSKERVILKVTVPSGKGSTTPTKAGVILNNSEYKMLIDNGYMVHVDKVSKVVKKGVECLQIEGTLKKSLDFKNDINAEAHSWGMKNYEEWAKDLTDSQREALDGYARQDYKEINNYLRNQGGSGNEKLDAQIKNISDALGKKPIPENITVYRWCGMPEFGYQISDPLPSLKDFEEQFLNTIKEDKGYMSTSLSSERLAAFGSRKIILRLQVPKGSTGAYLSAIGGFASEKEILLDKDSKYHIDKVTEVIIKGVKRYVVDATLLTN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Evolution and mechanism from structures of an ADP-ribosylating toxin and NAD complex.
pubmed doi rcsb
molecule tags Toxin
source organism Bacillus cereus
molecule keywords ADP-RIBOSYLTRANSFERASE
total genus 134
structure length 401
sequence length 401
ec nomenclature ec 2.4.2.30: NAD(+) ADP-ribosyltransferase.
pdb deposition date 1999-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1qs2A01
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1qs2A02
2C8CA 4XSGB 4PKSA 1UZIA 2J3XA 3U0JA 1G24A 1GZFA 5BWMB 2J3VA 4H0YA 1GIRA 2C8FE 4PKVA 1PWWA 1PWUA 1R4BA 2WN5A 2GWLA 3NTSA 5DZQA 4PKUA 1OG3A 1R45A 2A9KB 2WN6A 1ZXVA 2WN4A 4FMLA 1GIQA 1PWPA 3BW8A 4PKWA 1OJZA 5GTTA 1PWQA 1OG4A 2BOVB 5D1TA 2GWMA 4XM6A 4FXQA 1GY0A 2C89A 4FK7A 4GF1A 4XM7A 4H0TA 2C8DA 2A78B 1OG1A 1OJQA 1J7NA 5H04A 5D1UA 4XM8A 2C8AA 3BUZA 2WN8A 4DV8A 1YQYA 2C8EE 5D1SA 1QS2A 4GY2A 2WN7A 1GZEA 4TR5A 2C8HA 4WF6A 5H03A 2J3ZA 4H0VA 1GXYA 4PKQA 1QS1A 4ELNA 4H0XA 1PWVA 1JKYA 2C8BX 4PKTA 4XSHB 4H03A 4PKRA 1GXZA 2C8GA
chains in the Genus database with same CATH superfamily
2C8CA 4XSGB 4PKSA 1UZIA 2J3XA 3U0JA 1G24A 1GZFA 5BWMB 2J3VA 4H0YA 1GIRA 2C8FE 4PKVA 1PWWA 1PWUA 1R4BA 2WN5A 2GWLA 3NTSA 5DZQA 4PKUA 1OG3A 1R45A 2A9KB 2WN6A 1ZXVA 2WN4A 4FMLA 1GIQA 1PWPA 3BW8A 4PKWA 1OJZA 5GTTA 1PWQA 1OG4A 2BOVB 5D1TA 2GWMA 4XM6A 4FXQA 1GY0A 2C89A 4FK7A 4GF1A 4XM7A 4H0TA 2C8DA 2A78B 1OG1A 1OJQA 1J7NA 5H04A 5D1UA 4XM8A 2C8AA 3BUZA 2WN8A 4DV8A 1YQYA 2C8EE 5D1SA 1QS2A 4GY2A 2WN7A 1GZEA 4TR5A 2C8HA 4WF6A 5H03A 2J3ZA 4H0VA 1GXYA 4PKQA 1QS1A 4ELNA 4H0XA 1PWVA 1JKYA 2C8BX 4PKTA 4XSHB 4H03A 4PKRA 1GXZA 2C8GA
chains in the Genus database with same CATH topology
2C8CA 4XSGB 4PKSA 1UZIA 2J3XA 3U0JA 1G24A 1GZFA 5BWMB 2J3VA 4H0YA 1GIRA 2C8FE 4PKVA 1PWWA 1PWUA 1R4BA 2WN5A 2GWLA 3NTSA 5DZQA 4PKUA 1OG3A 1R45A 2A9KB 2WN6A 1ZXVA 2WN4A 4FMLA 1GIQA 1PWPA 3BW8A 4PKWA 1OJZA 5GTTA 1PWQA 1OG4A 2BOVB 5D1TA 2GWMA 4XM6A 4FXQA 1GY0A 2C89A 4FK7A 4GF1A 4XM7A 4H0TA 2C8DA 2A78B 1OG1A 1OJQA 1J7NA 5H04A 5D1UA 4XM8A 2C8AA 3BUZA 2WN8A 4DV8A 1YQYA 2C8EE 5D1SA 1QS2A 4GY2A 2WN7A 1GZEA 4TR5A 2C8HA 4WF6A 5H03A 2J3ZA 4H0VA 1GXYA 4PKQA 1QS1A 4ELNA 4H0XA 1PWVA 1JKYA 2C8BX 4PKTA 4XSHB 4H03A 4PKRA 1GXZA 2C8GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C8C A;  4XSG B;  4PKS A;  1UZI A;  2J3X A;  3U0J A;  1G24 A;  1GZF A;  5BWM B;  2J3V A;  4H0Y A;  1GIR A;  2C8F E;  4PKV A;  1PWW A;  1PWU A;  1R4B A;  2WN5 A;  2GWL A;  3NTS A;  5DZQ A;  4PKU A;  1OG3 A;  1R45 A;  2A9K B;  2WN6 A;  1ZXV A;  2WN4 A;  4FML A;  1GIQ A;  1PWP A;  3BW8 A;  4PKW A;  1OJZ A;  5GTT A;  1PWQ A;  1OG4 A;  2BOV B;  5D1T A;  2GWM A;  4XM6 A;  4FXQ A;  1GY0 A;  2C89 A;  4FK7 A;  4GF1 A;  4XM7 A;  4H0T A;  2C8D A;  2A78 B;  1OG1 A;  1OJQ A;  1J7N A;  5H04 A;  5D1U A;  4XM8 A;  2C8A A;  3BUZ A;  2WN8 A;  4DV8 A;  1YQY A;  2C8E E;  5D1S A;  1QS2 A;  4GY2 A;  2WN7 A;  1GZE A;  4TR5 A;  2C8H A;  4WF6 A;  5H03 A;  2J3Z A;  4H0V A;  1GXY A;  4PKQ A;  1QS1 A;  4ELN A;  4H0X A;  1PWV A;  1JKY A;  2C8B X;  4PKT A;  4XSH B;  4H03 A;  4PKR A;  1GXZ A;  2C8G A; 
#chains in the Genus database with same CATH topology
 2C8C A;  4XSG B;  4PKS A;  1UZI A;  2J3X A;  3U0J A;  1G24 A;  1GZF A;  5BWM B;  2J3V A;  4H0Y A;  1GIR A;  2C8F E;  4PKV A;  1PWW A;  1PWU A;  1R4B A;  2WN5 A;  2GWL A;  3NTS A;  5DZQ A;  4PKU A;  1OG3 A;  1R45 A;  2A9K B;  2WN6 A;  1ZXV A;  2WN4 A;  4FML A;  1GIQ A;  1PWP A;  3BW8 A;  4PKW A;  1OJZ A;  5GTT A;  1PWQ A;  1OG4 A;  2BOV B;  5D1T A;  2GWM A;  4XM6 A;  4FXQ A;  1GY0 A;  2C89 A;  4FK7 A;  4GF1 A;  4XM7 A;  4H0T A;  2C8D A;  2A78 B;  1OG1 A;  1OJQ A;  1J7N A;  5H04 A;  5D1U A;  4XM8 A;  2C8A A;  3BUZ A;  2WN8 A;  4DV8 A;  1YQY A;  2C8E E;  5D1S A;  1QS2 A;  4GY2 A;  2WN7 A;  1GZE A;  4TR5 A;  2C8H A;  4WF6 A;  5H03 A;  2J3Z A;  4H0V A;  1GXY A;  4PKQ A;  1QS1 A;  4ELN A;  4H0X A;  1PWV A;  1JKY A;  2C8B X;  4PKT A;  4XSH B;  4H03 A;  4PKR A;  1GXZ A;  2C8G A; 
#chains in the Genus database with same CATH homology
 2C8C A;  4XSG B;  4PKS A;  1UZI A;  2J3X A;  3U0J A;  1G24 A;  1GZF A;  5BWM B;  2J3V A;  4H0Y A;  1GIR A;  2C8F E;  4PKV A;  1PWW A;  1PWU A;  1R4B A;  2WN5 A;  2GWL A;  3NTS A;  5DZQ A;  4PKU A;  1OG3 A;  1R45 A;  2A9K B;  2WN6 A;  1ZXV A;  2WN4 A;  4FML A;  1GIQ A;  1PWP A;  3BW8 A;  4PKW A;  1OJZ A;  5GTT A;  1PWQ A;  1OG4 A;  2BOV B;  5D1T A;  2GWM A;  4XM6 A;  4FXQ A;  1GY0 A;  2C89 A;  4FK7 A;  4GF1 A;  4XM7 A;  4H0T A;  2C8D A;  2A78 B;  1OG1 A;  1OJQ A;  1J7N A;  5H04 A;  5D1U A;  4XM8 A;  2C8A A;  3BUZ A;  2WN8 A;  4DV8 A;  1YQY A;  2C8E E;  5D1S A;  1QS2 A;  4GY2 A;  2WN7 A;  1GZE A;  4TR5 A;  2C8H A;  4WF6 A;  5H03 A;  2J3Z A;  4H0V A;  1GXY A;  4PKQ A;  1QS1 A;  4ELN A;  4H0X A;  1PWV A;  1JKY A;  2C8B X;  4PKT A;  4XSH B;  4H03 A;  4PKR A;  1GXZ A;  2C8G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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